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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061857 ID=TCONS_00061857|Name=TCONS_00061857|organism=Clytia hemisphaerica|type=transcript|length=1340bp CTTTTCCATAAGACGTGTCAAAATTATGAATATAAAAGCACATAAGATGA ATGCAAAAAGCATAACTGTCCTGTCGTAGTCAAAAGGACAAGGATATTTT CGAATATTCAAAGGACTCACGATGCAGATCTTTATCTTTTCGTTGATTGC TTCGATCGCATACACTCAAGgTTATCACATCAAAGGTCCACAAAAAGACC ATAAGGAGATAAGTTACGATGAACCAATGCCCGAAGAAGATGCACAATAT GATGAAGAAATGTACCATGATGGTCCAAGCTGCAAGGATAAATATTCAAA TTGTCCAACTTCTTTGCGTCAATATTGCGAAAGTCACAGTTTTGTGAAGA CGGATTGGTGTCGGAAAACATGTGGTGATTGCTCACCAGACCCAGCTCCT GCTTATGTGACAGCTGAACCGAAAATTTCAAGCTCAGAGATGGAAAGCAT CAAAGCAACTTGCTTGGCAGCTCACAATGCAAAACGAGCACTCCACAGAG ACACATCCTCAATGACTTATGACATGGACCTCGCGAAACGTGCTCAAACC TACGCAGAATATCTCCTGGAATTCAAGCAGTGGAAACACGACGACTTTCG AACATATAATGGCTACGAAACTGGAGTTGGTGAAAACCTTTATTGGTCGT CTTCAGCAAGTGGAGCCTCTACTAACGCTGTTACTTCTTGGTACGACGAA ATCAAGAACTACAATTATGAAACCGGCAAGTCAAACGGTGGAGATATTGG TCATTTCACACAATTAGTTTGGGATTCTTCAACTAAATTGGGTTGCGGTG TTGCTAAAGGAACAGGTGGAACTTACGTCGTTTCCAGATATTTACCCGCC GGCAACACACAAGACCAGTACACACAGCATGTTCATGAGTTAATCGCGAA AAAAGATCAACAAGACGATGCTGTAGAAGAAAAAGTTTTATAAGCCAGGA TTTCCAACACAAATATTCAAGATGCTGAAAATTTGGTTACATCGTAGAAT TAATAGTATTTCCCATGAAATAACgtaaaaattataataaacCCTTTGTT ATTTTGCACACATATATCTTCAATTTGCTTAAAATATCGTCacttattta ttttattggCTGCTTTACAGATGTAAAATTTAAACCTTCCTTTATTTGAA ACATGCACTTTCAAGGAAATGACATCCGACATGACCTTTCGTATTTGTAC ATCTTAaattaacaagtgatacttttatggacctacctggttatgcattt aacacatatataattgatatctacgtgacgtgaccattaaacaatcattc agaacacAAATAGTGACGATTTATTAAGATTAGTCCtttg Run BLAST on NCBI transcript from alignment at scaffold_361:94600..97930+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061857 ID=TCONS_00061857|Name=TCONS_00061857|organism=Clytia hemisphaerica|type=transcript|length=3331bp|location=Sequence derived from alignment at scaffold_361:94600..97930+ (Clytia hemisphaerica) CTTTTCCATAAGACGTGTCAAAATTATGAATATAAAAGCACATAAGATGA
ATGCAAAAAGCATAACTGTCCTGTCGTAGTCAAAAGGACAAGGATATTTT
CGAATATTCAAAGGACTCACGATGCAGATCTTTATCTTTTCGTTGATTGC
TTCGATCGCATACACTCAAGGTGAGATCTAAATTGACTTTCCAAACCATC
TAAATTGAACCGTTGGACCTTTTCAGTGaaatatatttcttgaaaatgaa
acTGTTAATGTTAGATGAATTAAGAAACGTTGCGAGCTTTGTAATACATC
GTcactttaatatttttcaaggTTATCACATCAAAGGTCCACAAAAAGAC
CATAAGGAGATAAGTGAGTGATTATGATTTTTGTCTTTTCCCTTATGAAG
CATTATATTATGAAGCCCATTATCCTATTCAATAATCCCcctttttttgc
taaaaatttgaaaaaacccgGAAGCAAACTGACTTTTGAACAAGAATGCC
CTTTGAGGGAGTGCTTCAGAGTCCGGTATTCCGGTATTCCGGTTATGAGT
AGAAAAATTACCGGTATTCCAGTATTTAAGATGCCTGCCGGTACCGGTAT
TTACAGAGATATATACTGGTATTTCAGTGAAGGATTAGAAAATGACCGGT
ATTCTGGTATTTTGTACCCTCGGAAGCCCCCCACCTTTGACTTTCACAAT
TGCACCTTTCTGGCAGAAACATAAGACGGGGATAATGGCAATATAACCCT
TGTCTCGTACTTCAGCTCGAGGAAGTCAAaggcaaaaaataaataaataa
caaaacatttttgttcAATCAAGGTTACGATGAACCAATGCCCGAAGAAG
ATGCACAATATGATGAAGAAATGTACCATGATGGTCCAAGTGAgtctttt
caaatatttttgtattttgtattttttgtattCAACATATAGAGTATCGC
TCGGTAGATTAGGACGGACCAATGTCATATACAACTCTTGTCTTGTACTT
CAACACGAAGAAggtcaaaaaataaataagaaaaactttattgttCAAGG
TTACGATGGACCGGTGCCCGAAGGAGCTCCACAATATGATGAAGAAATGT
ACCAAGATGGTTTGAGTGAGTAGTTTTGATATTTCCTTTGACGACAAGGA
AGTGATTGAAAGTGAGGCTAAGTCTTGCTTTCCATGGGTTTCAAAATGTT
ATCACCAGTCCAAACGCTGAGTCTAAAATGTCTGGAATTATTTTGGGATT
GGAgattgatttcttttgtttacaaaGAGTTGAAATTATAATCGTAATTT
CTTCTTTAGGCTGCAAGGATAAATATTCAAATTGTCCAACTTCTTTGCGT
CAATATTGCGAAAGTCACAGTTTTGTGAAGACGGATTGGTGTCGGAAAAC
ATGTGGTGATTGCTCACCAGACCCAGCTCCTGGTAAGATATAATCGAAAT
CAATATATTAGTAGTAGAACCtctttttagactttttataaatttaaaaa
aataaaatttaaccaTCATGCTTTGCTGCAAGGTAGTTGTTTTGAGAACA
TTCATTATCGTTAAGACTCAATGTAGACCAGTTAGACTTAGCTCAAAAAA
TGGGATAAATATTCAATACTTTTTATACTATTACTTTTCACAGCTTATGT
GACAGCTGAACCGAAAATTTCAAGCTCAGAGATGGAAAGCATCAAAGGTA
TGACTTTCAGTGAATTCCTGAACGctggtaaaaaaattaatctcGTTGGA
GTGGCTATAAATGAACAAAATATTATAGTAAAGAAGTTACAAgacaaaag
aagaaagaaaccAAATATCACTAATTGTGaatgttcaattgttttacaag
tttgttttggacacgtgattttaattgttctctttataTAATGACACGTG
TTTCGCGCAATGTTTAAATTTTACTACTGTTATCTCCCTTTAAATGNAAT
GACACGTGGTACGCGCAATGTTTAAATTTTactactgttatgtcccttta
aattttTGTTAAGCTACAGttattcttattttcttgtttatCATAAAAGC
AACTTGCTTGGCAGCTCACAATGCAAAACGAGCACTCCACAGAGACACAT
CCTCAATGACTTATGACATGGACCTCGCGAAACGTGCTCAAACCTACGCA
GAATATCTCCTGGAATTCAAGCAGTGGAAACACGACGACTTTCGAACATA
TAATGGCTACGAAACTGGAGTTGGTGAAAACCTTTATTGGTCGTCTTCAG
CAAGTGGAGCCTCTACTAACGCTGTTACTTCTTGGTAAGATTACTAAGAT
TAATAAAACTCAATAATTCGAGAAGGATTCTCatctatataataataata
gtaGATATACGTATTTGAACACTTTCTCTGCGTGTTTTGATGTTTGCTAG
CGATTTCAGATTTCCGTAATTCTTTTTCCCGGGGATATAATTTGCATCAA
CATTTTTTAGCATAAACCCAGATGATACATATTGGTGATTTTTGTTTCCT
GAATATTGTCTATgacttttaaagattttaacaaTAGGCTGCGGAAAACC
TACGAATTCCTCTACATTGAATATTGAGTGATCCGTAATCTTTCTAAATT
TGTGGTATTTTAAAGGATTTAGCCCCTTGAAACACAATGCTAAAAACAGT
TGCCATGAAAACATTCTTTGATTTGATCTAGGTACGACGAAATCAAGAAC
TACAATTATGAAACCGGCAAGTCAAACGGTGGAGATATTGGTCATTTCAC
ACAATTAGTTTGGGATTCTTCAACTAAATTGGGTTGCGGTGTTGCTAAAG
GAACAGGTGGAACTTACGTCGTTTCCAGATATTTACCCGCCGGCAACACA
CAAGACCAGTACACACAGCATGTTCATGAGTTAATCGCGAAAAAAGATCA
ACAAGACGATGCTGTAGAAGAAAAAGTTTTATAAGCCAGGATTTCCAACA
CAAATATTCAAGATGCTGAAAATTTGGTTACATCGTAGAATTAATAGTAT
TTCCCATGAAATAACgtaaaaattataataaacCCTTTGTTATTTTGCAC
ACATATATCTTCAATTTGCTTAAAATATCGTCacttatttattttattgg
CTGCTTTACAGATGTAAAATTTAAACCTTCCTTTATTTGAAACATGCACT
TTCAAGGAAATGACATCCGACATGACCTTTCGTATTTGTACATCTTAaat
taacaagtgatacttttatggacctacctggttatgcatttaacacatat
ataattgatatctacgtgacgtgaccattaaacaatcattcagaacacAA
ATAGTGACGATTTATTAAGATTAGTCCtttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00061857-exon-scaffold_361-1491911889:94600..94769 | TCONS_00061857-exon-scaffold_361-1491911889:94600..94769 | Clytia hemisphaerica | exon |
TCONS_00061857-exon-scaffold_361-1510915933:94600..94769 | TCONS_00061857-exon-scaffold_361-1510915933:94600..94769 | Clytia hemisphaerica | exon |
TCONS_00061857-exon-scaffold_361-1575043694:94600..94769 | TCONS_00061857-exon-scaffold_361-1575043694:94600..94769 | Clytia hemisphaerica | exon |
TCONS_00061857-exon-scaffold_361-1491911889:94921..94962 | TCONS_00061857-exon-scaffold_361-1491911889:94921..94962 | Clytia hemisphaerica | exon |
TCONS_00061857-exon-scaffold_361-1510915933:94921..94962 | TCONS_00061857-exon-scaffold_361-1510915933:94921..94962 | Clytia hemisphaerica | exon |
TCONS_00061857-exon-scaffold_361-1575043694:94921..94962 | TCONS_00061857-exon-scaffold_361-1575043694:94921..94962 | Clytia hemisphaerica | exon |
TCONS_00061857-exon-scaffold_361-1491911889:95423..95488 | TCONS_00061857-exon-scaffold_361-1491911889:95423..95488 | Clytia hemisphaerica | exon |
TCONS_00061857-exon-scaffold_361-1510915933:95423..95488 | TCONS_00061857-exon-scaffold_361-1510915933:95423..95488 | Clytia hemisphaerica | exon |
TCONS_00061857-exon-scaffold_361-1575043694:95423..95488 | TCONS_00061857-exon-scaffold_361-1575043694:95423..95488 | Clytia hemisphaerica | exon |
TCONS_00061857-exon-scaffold_361-1491911889:95909..96031 | TCONS_00061857-exon-scaffold_361-1491911889:95909..96031 | Clytia hemisphaerica | exon |
TCONS_00061857-exon-scaffold_361-1510915933:95909..96031 | TCONS_00061857-exon-scaffold_361-1510915933:95909..96031 | Clytia hemisphaerica | exon |
TCONS_00061857-exon-scaffold_361-1575043694:95909..96031 | TCONS_00061857-exon-scaffold_361-1575043694:95909..96031 | Clytia hemisphaerica | exon |
TCONS_00061857-exon-scaffold_361-1491911889:96243..96296 | TCONS_00061857-exon-scaffold_361-1491911889:96243..96296 | Clytia hemisphaerica | exon |
TCONS_00061857-exon-scaffold_361-1510915933:96243..96296 | TCONS_00061857-exon-scaffold_361-1510915933:96243..96296 | Clytia hemisphaerica | exon |
TCONS_00061857-exon-scaffold_361-1575043694:96243..96296 | TCONS_00061857-exon-scaffold_361-1575043694:96243..96296 | Clytia hemisphaerica | exon |
TCONS_00061857-exon-scaffold_361-1491911889:96649..96883 | TCONS_00061857-exon-scaffold_361-1491911889:96649..96883 | Clytia hemisphaerica | exon |
TCONS_00061857-exon-scaffold_361-1510915933:96649..96883 | TCONS_00061857-exon-scaffold_361-1510915933:96649..96883 | Clytia hemisphaerica | exon |
TCONS_00061857-exon-scaffold_361-1575043694:96649..96883 | TCONS_00061857-exon-scaffold_361-1575043694:96649..96883 | Clytia hemisphaerica | exon |
TCONS_00061857-exon-scaffold_361-1491911889:97281..97930 | TCONS_00061857-exon-scaffold_361-1491911889:97281..97930 | Clytia hemisphaerica | exon |
TCONS_00061857-exon-scaffold_361-1510915933:97281..97930 | TCONS_00061857-exon-scaffold_361-1510915933:97281..97930 | Clytia hemisphaerica | exon |
TCONS_00061857-exon-scaffold_361-1575043694:97281..97930 | TCONS_00061857-exon-scaffold_361-1575043694:97281..97930 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_361 | supercontig | scaffold_361:94600..97930 + |
Blast
The following BLAST results are available for this feature:
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