TCONS_00061857 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061857
Unique NameTCONS_00061857
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1340

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061857 ID=TCONS_00061857|Name=TCONS_00061857|organism=Clytia hemisphaerica|type=transcript|length=1340bp
CTTTTCCATAAGACGTGTCAAAATTATGAATATAAAAGCACATAAGATGA
ATGCAAAAAGCATAACTGTCCTGTCGTAGTCAAAAGGACAAGGATATTTT
CGAATATTCAAAGGACTCACGATGCAGATCTTTATCTTTTCGTTGATTGC
TTCGATCGCATACACTCAAGgTTATCACATCAAAGGTCCACAAAAAGACC
ATAAGGAGATAAGTTACGATGAACCAATGCCCGAAGAAGATGCACAATAT
GATGAAGAAATGTACCATGATGGTCCAAGCTGCAAGGATAAATATTCAAA
TTGTCCAACTTCTTTGCGTCAATATTGCGAAAGTCACAGTTTTGTGAAGA
CGGATTGGTGTCGGAAAACATGTGGTGATTGCTCACCAGACCCAGCTCCT
GCTTATGTGACAGCTGAACCGAAAATTTCAAGCTCAGAGATGGAAAGCAT
CAAAGCAACTTGCTTGGCAGCTCACAATGCAAAACGAGCACTCCACAGAG
ACACATCCTCAATGACTTATGACATGGACCTCGCGAAACGTGCTCAAACC
TACGCAGAATATCTCCTGGAATTCAAGCAGTGGAAACACGACGACTTTCG
AACATATAATGGCTACGAAACTGGAGTTGGTGAAAACCTTTATTGGTCGT
CTTCAGCAAGTGGAGCCTCTACTAACGCTGTTACTTCTTGGTACGACGAA
ATCAAGAACTACAATTATGAAACCGGCAAGTCAAACGGTGGAGATATTGG
TCATTTCACACAATTAGTTTGGGATTCTTCAACTAAATTGGGTTGCGGTG
TTGCTAAAGGAACAGGTGGAACTTACGTCGTTTCCAGATATTTACCCGCC
GGCAACACACAAGACCAGTACACACAGCATGTTCATGAGTTAATCGCGAA
AAAAGATCAACAAGACGATGCTGTAGAAGAAAAAGTTTTATAAGCCAGGA
TTTCCAACACAAATATTCAAGATGCTGAAAATTTGGTTACATCGTAGAAT
TAATAGTATTTCCCATGAAATAACgtaaaaattataataaacCCTTTGTT
ATTTTGCACACATATATCTTCAATTTGCTTAAAATATCGTCacttattta
ttttattggCTGCTTTACAGATGTAAAATTTAAACCTTCCTTTATTTGAA
ACATGCACTTTCAAGGAAATGACATCCGACATGACCTTTCGTATTTGTAC
ATCTTAaattaacaagtgatacttttatggacctacctggttatgcattt
aacacatatataattgatatctacgtgacgtgaccattaaacaatcattc
agaacacAAATAGTGACGATTTATTAAGATTAGTCCtttg
Run BLAST on NCBI

transcript from alignment at scaffold_361:94600..97930+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061857 ID=TCONS_00061857|Name=TCONS_00061857|organism=Clytia hemisphaerica|type=transcript|length=3331bp|location=Sequence derived from alignment at scaffold_361:94600..97930+ (Clytia hemisphaerica)
CTTTTCCATAAGACGTGTCAAAATTATGAATATAAAAGCACATAAGATGA ATGCAAAAAGCATAACTGTCCTGTCGTAGTCAAAAGGACAAGGATATTTT CGAATATTCAAAGGACTCACGATGCAGATCTTTATCTTTTCGTTGATTGC TTCGATCGCATACACTCAAGGTGAGATCTAAATTGACTTTCCAAACCATC TAAATTGAACCGTTGGACCTTTTCAGTGaaatatatttcttgaaaatgaa acTGTTAATGTTAGATGAATTAAGAAACGTTGCGAGCTTTGTAATACATC GTcactttaatatttttcaaggTTATCACATCAAAGGTCCACAAAAAGAC CATAAGGAGATAAGTGAGTGATTATGATTTTTGTCTTTTCCCTTATGAAG CATTATATTATGAAGCCCATTATCCTATTCAATAATCCCcctttttttgc taaaaatttgaaaaaacccgGAAGCAAACTGACTTTTGAACAAGAATGCC CTTTGAGGGAGTGCTTCAGAGTCCGGTATTCCGGTATTCCGGTTATGAGT AGAAAAATTACCGGTATTCCAGTATTTAAGATGCCTGCCGGTACCGGTAT TTACAGAGATATATACTGGTATTTCAGTGAAGGATTAGAAAATGACCGGT ATTCTGGTATTTTGTACCCTCGGAAGCCCCCCACCTTTGACTTTCACAAT TGCACCTTTCTGGCAGAAACATAAGACGGGGATAATGGCAATATAACCCT TGTCTCGTACTTCAGCTCGAGGAAGTCAAaggcaaaaaataaataaataa caaaacatttttgttcAATCAAGGTTACGATGAACCAATGCCCGAAGAAG ATGCACAATATGATGAAGAAATGTACCATGATGGTCCAAGTGAgtctttt caaatatttttgtattttgtattttttgtattCAACATATAGAGTATCGC TCGGTAGATTAGGACGGACCAATGTCATATACAACTCTTGTCTTGTACTT CAACACGAAGAAggtcaaaaaataaataagaaaaactttattgttCAAGG TTACGATGGACCGGTGCCCGAAGGAGCTCCACAATATGATGAAGAAATGT ACCAAGATGGTTTGAGTGAGTAGTTTTGATATTTCCTTTGACGACAAGGA AGTGATTGAAAGTGAGGCTAAGTCTTGCTTTCCATGGGTTTCAAAATGTT ATCACCAGTCCAAACGCTGAGTCTAAAATGTCTGGAATTATTTTGGGATT GGAgattgatttcttttgtttacaaaGAGTTGAAATTATAATCGTAATTT CTTCTTTAGGCTGCAAGGATAAATATTCAAATTGTCCAACTTCTTTGCGT CAATATTGCGAAAGTCACAGTTTTGTGAAGACGGATTGGTGTCGGAAAAC ATGTGGTGATTGCTCACCAGACCCAGCTCCTGGTAAGATATAATCGAAAT CAATATATTAGTAGTAGAACCtctttttagactttttataaatttaaaaa aataaaatttaaccaTCATGCTTTGCTGCAAGGTAGTTGTTTTGAGAACA TTCATTATCGTTAAGACTCAATGTAGACCAGTTAGACTTAGCTCAAAAAA TGGGATAAATATTCAATACTTTTTATACTATTACTTTTCACAGCTTATGT GACAGCTGAACCGAAAATTTCAAGCTCAGAGATGGAAAGCATCAAAGGTA TGACTTTCAGTGAATTCCTGAACGctggtaaaaaaattaatctcGTTGGA GTGGCTATAAATGAACAAAATATTATAGTAAAGAAGTTACAAgacaaaag aagaaagaaaccAAATATCACTAATTGTGaatgttcaattgttttacaag tttgttttggacacgtgattttaattgttctctttataTAATGACACGTG TTTCGCGCAATGTTTAAATTTTACTACTGTTATCTCCCTTTAAATGNAAT GACACGTGGTACGCGCAATGTTTAAATTTTactactgttatgtcccttta aattttTGTTAAGCTACAGttattcttattttcttgtttatCATAAAAGC AACTTGCTTGGCAGCTCACAATGCAAAACGAGCACTCCACAGAGACACAT CCTCAATGACTTATGACATGGACCTCGCGAAACGTGCTCAAACCTACGCA GAATATCTCCTGGAATTCAAGCAGTGGAAACACGACGACTTTCGAACATA TAATGGCTACGAAACTGGAGTTGGTGAAAACCTTTATTGGTCGTCTTCAG CAAGTGGAGCCTCTACTAACGCTGTTACTTCTTGGTAAGATTACTAAGAT TAATAAAACTCAATAATTCGAGAAGGATTCTCatctatataataataata gtaGATATACGTATTTGAACACTTTCTCTGCGTGTTTTGATGTTTGCTAG CGATTTCAGATTTCCGTAATTCTTTTTCCCGGGGATATAATTTGCATCAA CATTTTTTAGCATAAACCCAGATGATACATATTGGTGATTTTTGTTTCCT GAATATTGTCTATgacttttaaagattttaacaaTAGGCTGCGGAAAACC TACGAATTCCTCTACATTGAATATTGAGTGATCCGTAATCTTTCTAAATT TGTGGTATTTTAAAGGATTTAGCCCCTTGAAACACAATGCTAAAAACAGT TGCCATGAAAACATTCTTTGATTTGATCTAGGTACGACGAAATCAAGAAC TACAATTATGAAACCGGCAAGTCAAACGGTGGAGATATTGGTCATTTCAC ACAATTAGTTTGGGATTCTTCAACTAAATTGGGTTGCGGTGTTGCTAAAG GAACAGGTGGAACTTACGTCGTTTCCAGATATTTACCCGCCGGCAACACA CAAGACCAGTACACACAGCATGTTCATGAGTTAATCGCGAAAAAAGATCA ACAAGACGATGCTGTAGAAGAAAAAGTTTTATAAGCCAGGATTTCCAACA CAAATATTCAAGATGCTGAAAATTTGGTTACATCGTAGAATTAATAGTAT TTCCCATGAAATAACgtaaaaattataataaacCCTTTGTTATTTTGCAC ACATATATCTTCAATTTGCTTAAAATATCGTCacttatttattttattgg CTGCTTTACAGATGTAAAATTTAAACCTTCCTTTATTTGAAACATGCACT TTCAAGGAAATGACATCCGACATGACCTTTCGTATTTGTACATCTTAaat taacaagtgatacttttatggacctacctggttatgcatttaacacatat ataattgatatctacgtgacgtgaccattaaacaatcattcagaacacAA ATAGTGACGATTTATTAAGATTAGTCCtttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038800XLOC_038800Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061857-exon-scaffold_361-1491911889:94600..94769TCONS_00061857-exon-scaffold_361-1491911889:94600..94769Clytia hemisphaericaexon
TCONS_00061857-exon-scaffold_361-1510915933:94600..94769TCONS_00061857-exon-scaffold_361-1510915933:94600..94769Clytia hemisphaericaexon
TCONS_00061857-exon-scaffold_361-1575043694:94600..94769TCONS_00061857-exon-scaffold_361-1575043694:94600..94769Clytia hemisphaericaexon
TCONS_00061857-exon-scaffold_361-1491911889:94921..94962TCONS_00061857-exon-scaffold_361-1491911889:94921..94962Clytia hemisphaericaexon
TCONS_00061857-exon-scaffold_361-1510915933:94921..94962TCONS_00061857-exon-scaffold_361-1510915933:94921..94962Clytia hemisphaericaexon
TCONS_00061857-exon-scaffold_361-1575043694:94921..94962TCONS_00061857-exon-scaffold_361-1575043694:94921..94962Clytia hemisphaericaexon
TCONS_00061857-exon-scaffold_361-1491911889:95423..95488TCONS_00061857-exon-scaffold_361-1491911889:95423..95488Clytia hemisphaericaexon
TCONS_00061857-exon-scaffold_361-1510915933:95423..95488TCONS_00061857-exon-scaffold_361-1510915933:95423..95488Clytia hemisphaericaexon
TCONS_00061857-exon-scaffold_361-1575043694:95423..95488TCONS_00061857-exon-scaffold_361-1575043694:95423..95488Clytia hemisphaericaexon
TCONS_00061857-exon-scaffold_361-1491911889:95909..96031TCONS_00061857-exon-scaffold_361-1491911889:95909..96031Clytia hemisphaericaexon
TCONS_00061857-exon-scaffold_361-1510915933:95909..96031TCONS_00061857-exon-scaffold_361-1510915933:95909..96031Clytia hemisphaericaexon
TCONS_00061857-exon-scaffold_361-1575043694:95909..96031TCONS_00061857-exon-scaffold_361-1575043694:95909..96031Clytia hemisphaericaexon
TCONS_00061857-exon-scaffold_361-1491911889:96243..96296TCONS_00061857-exon-scaffold_361-1491911889:96243..96296Clytia hemisphaericaexon
TCONS_00061857-exon-scaffold_361-1510915933:96243..96296TCONS_00061857-exon-scaffold_361-1510915933:96243..96296Clytia hemisphaericaexon
TCONS_00061857-exon-scaffold_361-1575043694:96243..96296TCONS_00061857-exon-scaffold_361-1575043694:96243..96296Clytia hemisphaericaexon
TCONS_00061857-exon-scaffold_361-1491911889:96649..96883TCONS_00061857-exon-scaffold_361-1491911889:96649..96883Clytia hemisphaericaexon
TCONS_00061857-exon-scaffold_361-1510915933:96649..96883TCONS_00061857-exon-scaffold_361-1510915933:96649..96883Clytia hemisphaericaexon
TCONS_00061857-exon-scaffold_361-1575043694:96649..96883TCONS_00061857-exon-scaffold_361-1575043694:96649..96883Clytia hemisphaericaexon
TCONS_00061857-exon-scaffold_361-1491911889:97281..97930TCONS_00061857-exon-scaffold_361-1491911889:97281..97930Clytia hemisphaericaexon
TCONS_00061857-exon-scaffold_361-1510915933:97281..97930TCONS_00061857-exon-scaffold_361-1510915933:97281..97930Clytia hemisphaericaexon
TCONS_00061857-exon-scaffold_361-1575043694:97281..97930TCONS_00061857-exon-scaffold_361-1575043694:97281..97930Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:94600..97930 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.195323 0.0670347 0 0.132734 0.518625 0 1.10393 0.945225 8.45398 5.50234 0.421908 14.3347 0.319371 0 0 0.0398424 35.1515 28.6544 0 0 6.33267 6.71818 11.821 17.8447 4.67902 7.86353 3.75912 4.09024 0.131712 0.184521
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061857 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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