TCONS_00061854 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00061854
Unique Name	TCONS_00061854
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1144

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_361:84770..90808+
coding sequence from alignment at scaffold_361:84770..90808+

transcript sequence

>TCONS_00061854 ID=TCONS_00061854|Name=TCONS_00061854|organism=Clytia hemisphaerica|type=transcript|length=1144bp
cgacttttttgaaatctgtTTATCAACTGAAATCTCTTATGAGGATGTTC
ATTGGTGACCCAACTCGAAGGAGGTAAGTGAACTAAAGAAGACAAAATGA
ATTTGTTGTTGGCCATTTTTTTGGTTGCATTGGCTGCAGTGTGTGGCGCG
GAAAAATGCAAGGACAAATACTCGAATTGTCCAACCGGATTGAAGAGATA
TTGCACCAGTACTGCTCATCCTTACGTCAAAACCAGTTGGTGTAGAAAAA
CTTGCAAAGATTGTACACCCGCACCCACTCCTCCGCCACCAGCTTACGTC
ACTGCACAACCAAAACTTTCCAGACGTGAAATGCTGAAAATTAAAGaaat
ttgCTTGGCAGCTCATAATGCGAAAAGAGCACTCCACAAAGATACACCAC
CGATGACATATGACATGGACCTCGCGAAACGTGCTCAAACTTATGCTGAA
TATATGCTGGAGAATAAACAATGGAAGCATGACCCTTACAGAAAACATGG
TTATAAAGGAGGTGTTGGTGAAAATCTCTTCTGGTCATCTTCAGCCTTTA
AATCTTCAACTCATGGTGTTAATGCATGGTACAATGAAATCAAGAATTAC
AATTTTGGAACTGGCAAGTCAAACGGTGGAGTTATTGGTCATTTCACACA
ATTAGTTTGGGATTCTTCAACTATATTGGGCTGTGGTGTTGCTAGAGGAA
CAGGTGGAACTTACCTCGTTTCGAGATATAGACCAGCTGGAAACTACCGT
GGAGCGTATTTGAAGCATGTCCACGAATTGAAGCCTCAACCAGGAATTGT
CTCCGATGTGGATGCAGTTTTGTAGAAACTTTGGTGATTATTGGTAAATC
TAACATGGAATCATTGTGTTATTTTCAAGTTATTGATCATTTATTGGTAG
AATATAGGATAAAGATTAAAGTTCAAATTGTATTTTTGATCTATCGGGCA
GGGATTTTTCTTGTGGGAGTTTAtttattcattgttttttttttcatttg
acccagaagtcttttattttttaatatatattGATCTCATTTCTGTATTA
TTTACACATtttatttaatgaattatataaaaacttttcaaagtagTTAC
GTGCAAAATGGACTTCCGTTTTTTTGACGCTGTTTAGTCGTTTC

Run BLAST on NCBI

protein sequence of TCONS_00061854-protein

>TCONS_00061854-protein ID=TCONS_00061854-protein|Name=TCONS_00061854-protein|organism=Clytia hemisphaerica|type=polypeptide|length=242bp
MNLLLAIFLVALAAVCGAEKCKDKYSNCPTGLKRYCTSTAHPYVKTSWCR
KTCKDCTPAPTPPPPAYVTAQPKLSRREMLKIKEICLAAHNAKRALHKDT
PPMTYDMDLAKRAQTYAEYMLENKQWKHDPYRKHGYKGGVGENLFWSSSA
FKSSTHGVNAWYNEIKNYNFGTGKSNGGVIGHFTQLVWDSSTILGCGVAR
GTGGTYLVSRYRPAGNYRGAYLKHVHELKPQPGIVSDVDAVL

Run BLAST on NCBI

transcript from alignment at scaffold_361:84770..90808+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00061854 ID=TCONS_00061854|Name=TCONS_00061854|organism=Clytia hemisphaerica|type=transcript|length=6039bp|location=Sequence derived from alignment at scaffold_361:84770..90808+ (Clytia hemisphaerica)
cgacttttttgaaatctgtTTATCAACTGAAATCTCTTATGAGGATGTTC
ATTGGTGACCCAACTCGAAGGAGGTAAGTGAACTAAAGAAGACAAAATGA
ATTTGTTGTTGGCCATTTTTTTGGTTGCATTGGCTGCAGTGTGTGGCGCG
GAAAGTATGTGTGCTTCTTCATGCCCTCTTTTATTATTACATTAGGGAAG
CTCACTTTGTTGTGAACTAATCTTTGTAATTTGTAGAGTTCAATCAAATG
AGgtgaaatcatattcaaagagtgctcgataaaaCCAACCAGGAGTAGCA
TATAACATGTAACATATGTTTTCacacagctttttaatttttttagttac
atctgatgattgcttagagcatgaaactccgagttatggatttataaatt
tttggttttgaaatatatttttgattaatttgtAGAGTTCTCACTTTTCA
GTATAAGTTCTCAGCTCAGTATAAGTTCTCAGCTCAGGTAAGATTTCAGC
TTTATATAGAAAATAaccaaatttgttaaaaaataagtCAAAGTAAAACA
TATTTgagcattttcaaaaattagattCTGCAGAAATTCTTCCCGTCAAA
CTAAGCTACCTTTAATGTACTTGATCATTTTGTTTACACattctgaaaaa
acttttctgtGATGCGGGGCCTGTGATGCTATGAGAAAAAACCAATGTGT
TTAGAATGATCATCACATCAGAGAAATCGTCTCAAAGCTAACCGAGAAAT
TCTTCCTTTTCTCTTGTTTAGAATGCAAGGACAAATACTCGAATTGTCCA
ACCGGATTGAAGAGATATTGCACCAGTACTGCTCATCCTTACGTCAAAAC
CAGTTGGTGTAGAAAAACTTGCAAAGATTGTACACCCGCACCCACTCCTC
CGCCACCAGGTGAGACAGAAGTAGTTGCCTTTAATAAACATAGATAATGG
CTTATAttgttttaaacaatagatcttatcggagtttttcatttttctaa
aacagcgatgcattttgggattgtttcgggggcactgcaatagaaatctc
ttaggaatttcTCGAGAGAATTCTATTGTTACACCCCTGAAACAATCCCA
TAACGCATCGCTGTTTTTAAGAATcgaaaaactccgataaggtctattag
tCAATAGATAACAATTTGTAGACAAGATTTGTAAATATACTTTGATGTGT
TCCTCGATGAATTGATTTGGCTGTATTTGAACACCATGTTGATATTCTTC
ACAGAAAACAAATTAGAAAAGAATTCCAAATGGATAGGGAATTTTCGGGG
AATCTCACGAATGAGACACAAGGTACCCAACTTACCTGTGAAGAAAGAAC
TGATGCGAACTTACTCACTCATTTGAAATTTCAGCTTACGTCACTGCACA
ACCAAAACTTTCCAGACGTGAAATGCTGAAAATTAAAGGTATGTTTACCA
TTTAACGGGAAACCAGAGTTATCTTTCATTGGGAACTCTAATAGAATAAA
GTTTACTCCTGCGCTGAACTTTACTTAAATAATTCTTTATGACAATAAGT
CCAGTGCGAGGTCGCCATCGAAAGAAACTGTTAAATatccaaaataacaa
aaaagctatATGGAGTTAATATATGATTAAGAATGGGAAACAAACAGGAA
TAGCAGATTTGCTTTCTCTCatcttcaaataaaaatattgctgtATCCTA
TTTCTACCTTCCAGAAATAACTGAAATCTTAAGCTCAAAATTGAGAACTG
CCAGATattaccgggccacttaatcgctcCATCCGGGCTAGGTCAGTAAG
GGTAGTCATAACATTATTTCAACCATTATAAgcagcaaaaacatttttca
tgcaATCACACAAGAAATAATCTCTAACCAAACCACTGTGGCTCAATGGA
ATTATTTCTCCCATCatttaatttggtaaaaaaagCGTATGTGATGGATA
CTGTAGAATTATGTAGATCTCTGTCACTGTTTCTCTCGGGTGCTTAATAA
ACGGAAGGAGTTAGATATCTAATTATATGGCTAGGAGGTTGGAAAAAGCT
AGAAAAATTATCAAACGAGAGGGGGGCGTTTagtactctaaggtcccgaa
ttaGGGTGCCCGAATAAAAGGGGGTCCGAGTATGGACctttattcgggac
cttagagaaGGCGCTAGCACGTTACACAATAgacaaatataaatataaat
gtTTTAAAGAAACAGTAAGCAAAGATATTCTCattcaaaagctcaaaaat
atatCTTTTCAAACCCTgctaataaattatttttttttattagaaatttg
CTTGGCAGCTNTTTTCAAACCCTGCTAATAAgttattgttttttattaga
aatttgCTTGGCAGCTCATAATGCGAAAAGAGCACTCCACAAAGATACAC
CACCGATGACATATGACATGGACCTCGCGAAACGTGCTCAAACTTATGCT
GAATATATGCTGGAGAATAAACAATGGAAGCATGACCCTTACAGAAAACA
TGGTTATAAAGGAGGTGTTGGTGAAAATCTCTTCTGGTCATCTTCAGCCT
TTAAATCTTCAACTCATGGTGTTAATGCATGGTAAGAAATTTACTCTTCC
CTATGTCTGTAGCAGTATTTATACCATTAAACTTTGATAGTTTATTGTGT
TgggttattttttatttatttttttattaccaACCGTATTATTGGTGTTT
TATTTTAAGGCTGTGTTAAAACATTTACAATGTAAAAAGTGCGGCGTAAA
GTTCAGTGCGAGGAGTTTGGTAAGGCATTTTCAGTGTGATTAGTGTTTTA
GAACCTTTTCAATGAAGGtagtaaaagattttcaaagtgaagagtGTGGT
TAAACATTTTCGATGTAAGGagtgttaaaaacattttcaatgtgaagagt
gtggtaaaacattttcaacgtGAAGAATggggtaaaacattttcaaagtg
aagaatgtggtaaaacattttcaaagtgaagagtgtggtaaaacattttc
aaagtgaaggagtgtcgtaaaacattttcaatgtgaagagtgtGGTAATA
CATTTCaaatgtgaagaatgtggtaaagtattttcaaagtgaagagtgtg
gttaaaaaaatttcaaagtgaagagtgtggtaaaacattttcaaagtgaa
gagtatcgtaaaacattttcaatgtgaagagtgtcgtaaaacattttcaa
tgtgaagagtgtggtaaaacattttcaaagtgaagagtgtggtaatacat
tttcaaagtgaagagtgtcgtaaaacattttcaatgtgaagagtgtcgta
aaacattttcaatgtgaagagtgtGGTAATACATTTCAAATGggaagaat
gtggtaaaacattttcaaagtgaagagtgtggttaaaaaaatttcaaagt
gaagagtgtggtaatacattttcaaagtgaagagtgtcgtaaaacatttt
caaagtgaagagtgtggttaaaaaaatttcaaagtgaagagtgtggtaat
acattttcaaagtgaagagtgtcgtaaaacattttcaaagtgaagagtgt
ggttaaaaaaatttcaaagtgaagagtgtggtaatacattttcaaagtga
agagtgtcgtaaaacattttcaaagtgaagagtgtggttaaaaaaatttc
aaagtgaagagtgtggtaatacattttcaaagtgaagagtgtcgtaaaac
attttcaaagtgaagagtgtggttaaaaaaatttcaaagtgaagagtgtg
gtaatacattttcaaagtgaagagtgtcgtaaaacattttcaaagtgaag
agtgtggttaaaaaaatttcaaagtgaagagtgtggtaatacattttcaa
agtgaagagtgtcgtaaaacattttcaaagtgaagagtgtggttaaaaaa
atttcaaagtgaagagtgtggtaatacattttcaaagtgaagagtgtcgt
aaaacattttcaaagtgaagagtgtggttaaaaaaatttcaaagtgaaga
gtgtggtaatacattttcaaagtgaagagtgtcgtaaaacattttcaaag
tgaagagtgtggttaaaaaaatttcaaagtgaagagtgtggtaatacatt
ttcaaagtgaagagtgtcgtaaaacattttcaaagtgaagagtgtggtta
aaaaaatttcaaagtgaagagtgtggtaatacattttcaaagtgaagagt
gtcgtaaaacattttcaaagtgaagagtgtggttaaaaaaatttcaaagt
gaagagtgtggtaatacattttcaaagtgaagagtgtcgtaaaacatttt
caaagtgaagaatggggtaaaagattttcaaagtgaagaatgtggtaaaa
cattttcaaagtgaagaatgtggtaaaacattttcattgtgaagaaaaag
gtaaaacattttcaatgtgaagaatGGGGTAGAACATTTTCATTGTGAAG
AAaaaggtaaaacattttcaatgtgaagaatggggtaaaacattttcaat
gtgaagagtgtggtaaaacattttcaacgtGAAGAGTggggtaaaatatt
ttcaaagtgaagagtttggtgaaatattttaatgtgaagaatgtggtaaa
acattttcaatgtgaggAATATTATAAACATTTCCAATGAGAAatgtgtg
gtaaaacattttcaatgtgaggAATATTATAAACATTTCCAATGAGAAAT
GTGTGGTAAAGCATTTTCAATGTAAAGAGCggggtaaaatattttcaaag
tgaagTGTTTGGTAAAACATTTCCAaagtgaagaatgtggtaaaacattt
tcaaagtgaagaatgtggtaaaacattttcattgtgaagaaaaaggtaaa
acattttcaaagtgaagaatggggtaaaagattttcaaagtgaagaatgt
ggtaaaacattttcaaagtgaagaatgtggtaaaacatATTCATTGTGAA
GAAaaaggtaaaacattttcaatgtggaGAATggggtaaaatattttcaa
tgtgaagagtgtggtaaaacattttcaacgtGAAGAATggggtaaaacat
tttcaatgtgaagaatgtggtaaaacattttcaatgtgaagaatgtggta
aaatattttcaaagtgaagagtgtggtaaaatattttaatgtgaagaatg
tggtaaaacattttcaatgtgaggAATATTATAAACATTTCCAATGAGAA
atgtgtggtaaaacattttcaatgtaaagagcggggaaaaatattttcaa
tgtgaaAAGTGTGGTAAAAAGTGTGTGATGGAACATTTTCAATAAAAGGA
GCATTTACAAAGGTGTGGcgcaaaataatttcaatatgAAGCAGTATGGT
AAAAGTATTTTTAAGGCGAAACAAGcgtagaaaaataaataatatttgaC
ATCGTATTAAACAAATCACACATTTGGCAAACTGTTGAATAAACAATCta
atctttattttgattttgctcAGGTACAATGAAATCAAGAATTACAATTT
TGGAACTGGCAAGTCAAACGGTGGAGTTATTGGTCATTTCACACAATTAG
TTTGGGATTCTTCAACTATATTGGGCTGTGGTGTTGCTAGAGGAACAGGT
GGAACTTACCTCGTTTCGAGATATAGACCAGCTGGAAACTACCGTGGAGC
GTATTTGAAGCATGTCCACGAATTGAAGCCTCAACCAGGAATTGTCTCCG
ATGTGGATGCAGTTTTGTAGAAACTTTGGTGATTATTGGTAAATCTAACA
TGGAATCATTGTGTTATTTTCAAGTTATTGATCATTTATTGGTAGAATAT
AGGATAAAGATTAAAGTTCAAATTGTATTTTTGATCTATCGGGCAGGGAT
TTTTCTTGTGGGAGTTTAtttattcattgttttttttttcatttgaccca
gaagtcttttattttttaatatatattGATCTCATTTCTGTATTATTTAC
ACATtttatttaatgaattatataaaaacttttcaaagtagTTACGTGCA
AAATGGACTTCCGTTTTTTTGACGCTGTTTAGTCGTTTC

Coding sequence (CDS) from alignment at scaffold_361:84770..90808+

>TCONS_00061854 ID=TCONS_00061854|Name=TCONS_00061854|organism=Clytia hemisphaerica|type=CDS|length=3645bp|location=Sequence derived from alignment at scaffold_361:84770..90808+ (Clytia hemisphaerica)
ATGAATTTGTTGTTGGCCATTTTTTTGGTTGCATTGGCTGCAGTGTGTGG
CGCGGAAAAATGCAAGGACAAATACTCGAATTGTCCAACCGGATTGAAGA
GATATTGCACCAGTACTGCTCATCCTTACGTCAAAACCAGTTGGTGTAGA
AAAACTTGCAAAGATTGTACACCCGCACCCACTCCTCCGCCACCAGCTTA
CGTCACTGCACAACCAAAACTTTCCAGACGTGAAATGCTGAAAATTAAAG
aaatttgCTTGGCAGCTCATAATGCGAAAAGAGCACTCCACAAAGATACA
CCACCGATGACATATGACATGGACCTCGCGAAACGTGCTCAAACTTATGC
TGAATATATGCTGGAGAATAAACAATGGAAGCATGACCCTTACAGAAAAC
ATGGTTATAAAGGAGGTGTTGGTGAAAATCTCTTCTGGTCATCTTCAGCC
TTTAAATCTTCAACTCATGGTGTTAATGCATGGTACAATGAAATCAAGAA
TTACAATTTTGGAACTGGCAAGTCAAACGGTGGAGTTATTGGTCATTTCA
CACAATTAGTTTGGGATTCTTCAACTATATTGGGCTGTGGTGTTGCTAGA
GGAACAGGTGGAACTTACCTCGTTTCGAGATATAGACCAGCTGGAAACTA
CCGTGGAGCGTATTTGAAGCATGTCCACGAATTGAAGCCTCAACCAGGAA
TTGTCTCCGATGTGGATGCAGTTTTGTAGATGAATTTGTTGTTGGCCATT
TTTTTGGTTGCATTGGCTGCAGTGTGTGGCGCGGAAAAATGCAAGGACAA
ATACTCGAATTGTCCAACCGGATTGAAGAGATATTGCACCAGTACTGCTC
ATCCTTACGTCAAAACCAGTTGGTGTAGAAAAACTTGCAAAGATTGTACA
CCCGCACCCACTCCTCCGCCACCAGCTTACGTCACTGCACAACCAAAACT
TTCCAGACGTGAAATGCTGAAAATTAAAGaaatttgCTTGGCAGCTCATA
ATGCGAAAAGAGCACTCCACAAAGATACACCACCGATGACATATGACATG
GACCTCGCGAAACGTGCTCAAACTTATGCTGAATATATGCTGGAGAATAA
ACAATGGAAGCATGACCCTTACAGAAAACATGGTTATAAAGGAGGTGTTG
GTGAAAATCTCTTCTGGTCATCTTCAGCCTTTAAATCTTCAACTCATGGT
GTTAATGCATGGTACAATGAAATCAAGAATTACAATTTTGGAACTGGCAA
GTCAAACGGTGGAGTTATTGGTCATTTCACACAATTAGTTTGGGATTCTT
CAACTATATTGGGCTGTGGTGTTGCTAGAGGAACAGGTGGAACTTACCTC
GTTTCGAGATATAGACCAGCTGGAAACTACCGTGGAGCGTATTTGAAGCA
TGTCCACGAATTGAAGCCTCAACCAGGAATTGTCTCCGATGTGGATGCAG
TTTTGTAGATGAATTTGTTGTTGGCCATTTTTTTGGTTGCATTGGCTGCA
GTGTGTGGCGCGGAAAAATGCAAGGACAAATACTCGAATTGTCCAACCGG
ATTGAAGAGATATTGCACCAGTACTGCTCATCCTTACGTCAAAACCAGTT
GGTGTAGAAAAACTTGCAAAGATTGTACACCCGCACCCACTCCTCCGCCA
CCAGCTTACGTCACTGCACAACCAAAACTTTCCAGACGTGAAATGCTGAA
AATTAAAGaaatttgCTTGGCAGCTCATAATGCGAAAAGAGCACTCCACA
AAGATACACCACCGATGACATATGACATGGACCTCGCGAAACGTGCTCAA
ACTTATGCTGAATATATGCTGGAGAATAAACAATGGAAGCATGACCCTTA
CAGAAAACATGGTTATAAAGGAGGTGTTGGTGAAAATCTCTTCTGGTCAT
CTTCAGCCTTTAAATCTTCAACTCATGGTGTTAATGCATGGTACAATGAA
ATCAAGAATTACAATTTTGGAACTGGCAAGTCAAACGGTGGAGTTATTGG
TCATTTCACACAATTAGTTTGGGATTCTTCAACTATATTGGGCTGTGGTG
TTGCTAGAGGAACAGGTGGAACTTACCTCGTTTCGAGATATAGACCAGCT
GGAAACTACCGTGGAGCGTATTTGAAGCATGTCCACGAATTGAAGCCTCA
ACCAGGAATTGTCTCCGATGTGGATGCAGTTTTGTAGATGAATTTGTTGT
TGGCCATTTTTTTGGTTGCATTGGCTGCAGTGTGTGGCGCGGAAAAATGC
AAGGACAAATACTCGAATTGTCCAACCGGATTGAAGAGATATTGCACCAG
TACTGCTCATCCTTACGTCAAAACCAGTTGGTGTAGAAAAACTTGCAAAG
ATTGTACACCCGCACCCACTCCTCCGCCACCAGCTTACGTCACTGCACAA
CCAAAACTTTCCAGACGTGAAATGCTGAAAATTAAAGaaatttgCTTGGC
AGCTCATAATGCGAAAAGAGCACTCCACAAAGATACACCACCGATGACAT
ATGACATGGACCTCGCGAAACGTGCTCAAACTTATGCTGAATATATGCTG
GAGAATAAACAATGGAAGCATGACCCTTACAGAAAACATGGTTATAAAGG
AGGTGTTGGTGAAAATCTCTTCTGGTCATCTTCAGCCTTTAAATCTTCAA
CTCATGGTGTTAATGCATGGTACAATGAAATCAAGAATTACAATTTTGGA
ACTGGCAAGTCAAACGGTGGAGTTATTGGTCATTTCACACAATTAGTTTG
GGATTCTTCAACTATATTGGGCTGTGGTGTTGCTAGAGGAACAGGTGGAA
CTTACCTCGTTTCGAGATATAGACCAGCTGGAAACTACCGTGGAGCGTAT
TTGAAGCATGTCCACGAATTGAAGCCTCAACCAGGAATTGTCTCCGATGT
GGATGCAGTTTTGTAGATGAATTTGTTGTTGGCCATTTTTTTGGTTGCAT
TGGCTGCAGTGTGTGGCGCGGAAAAATGCAAGGACAAATACTCGAATTGT
CCAACCGGATTGAAGAGATATTGCACCAGTACTGCTCATCCTTACGTCAA
AACCAGTTGGTGTAGAAAAACTTGCAAAGATTGTACACCCGCACCCACTC
CTCCGCCACCAGCTTACGTCACTGCACAACCAAAACTTTCCAGACGTGAA
ATGCTGAAAATTAAAGaaatttgCTTGGCAGCTCATAATGCGAAAAGAGC
ACTCCACAAAGATACACCACCGATGACATATGACATGGACCTCGCGAAAC
GTGCTCAAACTTATGCTGAATATATGCTGGAGAATAAACAATGGAAGCAT
GACCCTTACAGAAAACATGGTTATAAAGGAGGTGTTGGTGAAAATCTCTT
CTGGTCATCTTCAGCCTTTAAATCTTCAACTCATGGTGTTAATGCATGGT
ACAATGAAATCAAGAATTACAATTTTGGAACTGGCAAGTCAAACGGTGGA
GTTATTGGTCATTTCACACAATTAGTTTGGGATTCTTCAACTATATTGGG
CTGTGGTGTTGCTAGAGGAACAGGTGGAACTTACCTCGTTTCGAGATATA
GACCAGCTGGAAACTACCGTGGAGCGTATTTGAAGCATGTCCACGAATTG
AAGCCTCAACCAGGAATTGTCTCCGATGTGGATGCAGTTTTGTAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_038799	XLOC_038799	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00061854-protein	TCONS_00061854-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_361	supercontig	scaffold_361:84770..90808 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.113832	0.0370015	0.0859245	0.0420319	0.0511698	0.16174	6.97599	6.25682	115.337	41.5642	105.14	141.298	20.1126	16.7464	76.1213	76.557	2.36522	2.1623	17.236	21.0302	1.28403	1.2884	0.609084	0.949278	2.28138	2.29059	0	0.33316	1.30557	1.33016

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR002413	V5_allergen
IPR001283	Allrgn_V5/Tpx1
IPR014044	CAP_domain
IPR003582	ShKT_dom
IPR018244	Allrgn_V5/Tpx1_CS
IPR034113	SCP_GAPR1-like

Vocabulary: **Cellular Component**
Term	Definition
GO:0005576	extracellular region

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005576	extracellular region

Blast

[Close]

BLAST of TCONS_00061854 vs. Swiss-Prot (Human)
Match: GAPR1 (Golgi-associated plant pathogenesis-related protein 1 OS=Homo sapiens GN=GLIPR2 PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 1.390e-18
Identity = 50/132 (37.88%), Postives = 71/132 (53.79%), Query Frame = 1

Query:  352 CLAAHNAKRALHKDTPPMTYDMDLAKRAQTYAEYMLENKQWKHDPYRKHGYKGGVGENLFWSSSAFKSSTHGVNAWYNEIKNYNFGTGKSNGGVIGHFTQLVWDSSTILGCGVARGT-GGTYLVSRYRPAGN 744
             L AHN  R  H   PP+    +L + AQ Y+E +   +  KH P      +G  GENL W+S   ++     + WY+EIKNYNF       G  GHFT +VW ++  +G G A  + G +++V+RY PAGN
Sbjct:   13 VLKAHNEYRQKH-GVPPLKLCKNLNREAQQYSEALASTRILKHSP---ESSRGQCGENLAWASYD-QTGKEVADRWYSEIKNYNFQQPGFTSGT-GHFTAMVWKNTKKMGVGKASASDGSSFVVARYFPAGN 138

The following BLAST results are available for this feature:

BLAST of TCONS_00061854 vs. Swiss-Prot (Human)

BLAST of TCONS_00061854 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GAPR1	1.390e-18	37.88	Golgi-associated plant pathogenesis-related protei...	[more]

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TCONS_00061854 (transcript) - C. hemisphaerica