TCONS_00061839 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061839
Unique NameTCONS_00061839
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2212

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061839 ID=TCONS_00061839|Name=TCONS_00061839|organism=Clytia hemisphaerica|type=transcript|length=2212bp
gcaaatcgaATCGAATATCCTTTCCTCAACCAAAATAGTATCATTAAATT
TAATTACTTTGATGGTATTTTGAAATCCTTGCAGATTTACAAAATAATTA
TCTTCTTTCACAATTTCTTTACCATTATAGGAAGCACTTAGAATTTCTTC
ttaatttaaaattaaagacaataaaaaatgaaaatctcctttacattttg
catcattttttttcatatttagaattttcttaaaatacaatacaatattT
TCAGTTTAACAAATAATTATgtaaaaagtttccaaaaaaataaaatcgtt
AAAAATATATATGTACATGGTGTGTTTTTGAAGGaaataattttcgtttt
tttgaggaaaAGGGTAATGTAAGTTTATTTGTAATTGTCTGTTTTAGAGA
TGCTTGGAGCTTCTCAGTAAGCATGTACCAATACGTATTTCTTCAAAGGA
TGGTTTGAGAAGCCAATTGAACCATCGGGTCCTTTTGGTTGGCGGATAAT
TTCGAGTTGTGGGATATTGTTGGCGATTggtgaatttttcaaattttgtt
ctgCGGCGGCCATCATTCTTCGTTTTAACCATGGTGAAAGTTCTGCTTCT
TTTGTCGAAGATGGTGCGTCTTCGTTGAATGAGTTTCCCCTTGATTTGGC
GCGCCATTCACCTTCGAATGAATTTCCGCGCGACCGGCGCTCGTTCCATG
AGTTGTTTCTTGATTTGTTTATACCACGTCGTTCGAATTCTGGGCTGGAA
TTGGGGCTGTTTTTCTGTACACCATTGACGAGTGGAGACAACTTATGTTG
GTTACTGCTTTGTTTACGTTCTGGTGAGACTTTGTTCTTGCGTCCATTTT
TAGGTGAGGTTTTGGGGCTAGCGTTGGGTGAGTTACCAGCCTTTCGAGTC
AGCTTTGGGCTTGTTGCTGGTGAATTTCCTCTGGATCTGTTGTATCGTTT
GTTACAGCTGCTAAAAGCGGAGAATTCGGTATCGGAACCGCCAGATGACG
GATAGTCTTCTTGTCCGGATACCTCCAATAAGCGACTGTTTCGTTTCCCT
TTGGTTGAGCCACGTCGCTCGACGGCAGAGTCTGAATCTCCGGCGTCACT
GTTATTGGCGCTGTTGATCTTTTTGGCTTGTTTGGGTCCCAATTCCAATA
ACTTAGCTTGAAGTCCTTGGTATTTGTTGGAGAATTTGGTTTTGATTGCT
TCGTTGGCAATGTCTGGATTTTCGAATTCGACAACAGCGACTGTTTCTTC
ACGAAGCTCTGGATGTCTTGAGAAATGGGATTGTAAATCGTTAGGGAATT
TCTTTCCAGGTTTGATAATTCTGACAGAAACGACATCATCTTTGTGACCT
TCAAAGGCTTCATTGATGTAATTCATTGAAGGATTCTCGTTTGGGATTTT
GGTGAGGACAATATGTTTGACACGAGCTTGATCTAAAAGTTCTTTTGGTA
GCGGTGTCACTCGTTTCAATTTCAAACCTGTCTCGTTGATAACAAGCTCT
TTGGAGTCTTTCAATGCTTCACCGATAACACGATAATCACGGCTCAACGA
TCTCATCTTTTTGAAGGAAGCAAGAAGCTTCAGGTTGACGAAGCCTTCTT
TGTTTCGTTTGACGTGCTTCAAAAGGAATCCATCTTTCTTCAGGTTTTCA
TCAGAGAAATAATATTCAGCTTGGATGATGATTTTCTCACGGAGTTCTTC
TGTCAGCTCTTGTGGATCCTCCTCTTCACCAATGGACGAACCTGAATCTA
AGCGTTCGAATTGTGCGCGCGGGACCAGTTTGATTGTCCGCATGGCCGTC
GGGGATCTTCGTTCTTCATCAGAAGAGCTTGTAGTGAAGCCATCTTCATG
TCGTTCCAATTCAACTTTTTGGAATTCCACTTGAATCTCTGGTACTTGTT
CTGAAGCCATTATTAATGATGTTTATTGCTGAATCAACGAAAGACAAACT
ATGATATAACTAGTGATTTTAAAGTTTAGTGTATGTCACCACTTTAAAAA
ACTTTCGCCTTTCCTCTCTTGAATTTTGTTCTCTACGATGTGTTcgtctt
gagaaattcaagttGTGAATGTTGTTATCTATTCCCCTCTCCTGTTCTTT
TATTTATATCTTTCATCTTACGTCATCTGTATTGTATGGTATAAATGACG
TGTTTTGTGTACTAAATCAACCACTGTGATTGGTTAATATTTAacgagca
atctgattggtt
Run BLAST on NCBI

protein sequence of TCONS_00061839-protein

>TCONS_00061839-protein ID=TCONS_00061839-protein|Name=TCONS_00061839-protein|organism=Clytia hemisphaerica|type=polypeptide|length=498bp
MASEQVPEIQVEFQKVELERHEDGFTTSSSDEERRSPTAMRTIKLVPRAQ
FERLDSGSSIGEEEDPQELTEELREKIIIQAEYYFSDENLKKDGFLLKHV
KRNKEGFVNLKLLASFKKMRSLSRDYRVIGEALKDSKELVINETGLKLKR
VTPLPKELLDQARVKHIVLTKIPNENPSMNYINEAFEGHKDDVVSVRIIK
PGKKFPNDLQSHFSRHPELREETVAVVEFENPDIANEAIKTKFSNKYQGL
QAKLLELGPKQAKKINSANNSDAGDSDSAVERRGSTKGKRNSRLLEVSGQ
EDYPSSGGSDTEFSAFSSCNKRYNRSRGNSPATSPKLTRKAGNSPNASPK
TSPKNGRKNKVSPERKQSSNQHKLSPLVNGVQKNSPNSSPEFERRGINKS
RNNSWNERRSRGNSFEGEWRAKSRGNSFNEDAPSSTKEAELSPWLKRRMM
AAAEQNLKNSPIANNIPQLEIIRQPKGPDGSIGFSNHPLKKYVLVHAY
Run BLAST on NCBI

transcript from alignment at scaffold_360:104048..106259

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061839 ID=TCONS_00061839|Name=TCONS_00061839|organism=Clytia hemisphaerica|type=transcript|length=2212bp|location=Sequence derived from alignment at scaffold_360:104048..106259 (Clytia hemisphaerica)
aaccaatcagattgctcgtTAAATATTAACCAATCACAGTGGTTGATTTA
GTACACAAAACACGTCATTTATACCATACAATACAGATGACGTAAGATGA
AAGATATAAATAAAAGAACAGGAGAGGGGAATAGATAACAACATTCACaa
cttgaatttctcaagacgAACACATCGTAGAGAACAAAATTCAAGAGAGG
AAAGGCGAAAGTTTTTTAAAGTGGTGACATACACTAAACTTTAAAATCAC
TAGTTATATCATAGTTTGTCTTTCGTTGATTCAGCAATAAACATCATTAA
TAATGGCTTCAGAACAAGTACCAGAGATTCAAGTGGAATTCCAAAAAGTT
GAATTGGAACGACATGAAGATGGCTTCACTACAAGCTCTTCTGATGAAGA
ACGAAGATCCCCGACGGCCATGCGGACAATCAAACTGGTCCCGCGCGCAC
AATTCGAACGCTTAGATTCAGGTTCGTCCATTGGTGAAGAGGAGGATCCA
CAAGAGCTGACAGAAGAACTCCGTGAGAAAATCATCATCCAAGCTGAATA
TTATTTCTCTGATGAAAACCTGAAGAAAGATGGATTCCTTTTGAAGCACG
TCAAACGAAACAAAGAAGGCTTCGTCAACCTGAAGCTTCTTGCTTCCTTC
AAAAAGATGAGATCGTTGAGCCGTGATTATCGTGTTATCGGTGAAGCATT
GAAAGACTCCAAAGAGCTTGTTATCAACGAGACAGGTTTGAAATTGAAAC
GAGTGACACCGCTACCAAAAGAACTTTTAGATCAAGCTCGTGTCAAACAT
ATTGTCCTCACCAAAATCCCAAACGAGAATCCTTCAATGAATTACATCAA
TGAAGCCTTTGAAGGTCACAAAGATGATGTCGTTTCTGTCAGAATTATCA
AACCTGGAAAGAAATTCCCTAACGATTTACAATCCCATTTCTCAAGACAT
CCAGAGCTTCGTGAAGAAACAGTCGCTGTTGTCGAATTCGAAAATCCAGA
CATTGCCAACGAAGCAATCAAAACCAAATTCTCCAACAAATACCAAGGAC
TTCAAGCTAAGTTATTGGAATTGGGACCCAAACAAGCCAAAAAGATCAAC
AGCGCCAATAACAGTGACGCCGGAGATTCAGACTCTGCCGTCGAGCGACG
TGGCTCAACCAAAGGGAAACGAAACAGTCGCTTATTGGAGGTATCCGGAC
AAGAAGACTATCCGTCATCTGGCGGTTCCGATACCGAATTCTCCGCTTTT
AGCAGCTGTAACAAACGATACAACAGATCCAGAGGAAATTCACCAGCAAC
AAGCCCAAAGCTGACTCGAAAGGCTGGTAACTCACCCAACGCTAGCCCCA
AAACCTCACCTAAAAATGGACGCAAGAACAAAGTCTCACCAGAACGTAAA
CAAAGCAGTAACCAACATAAGTTGTCTCCACTCGTCAATGGTGTACAGAA
AAACAGCCCCAATTCCAGCCCAGAATTCGAACGACGTGGTATAAACAAAT
CAAGAAACAACTCATGGAACGAGCGCCGGTCGCGCGGAAATTCATTCGAA
GGTGAATGGCGCGCCAAATCAAGGGGAAACTCATTCAACGAAGACGCACC
ATCTTCGACAAAAGAAGCAGAACTTTCACCATGGTTAAAACGAAGAATGA
TGGCCGCCGcagaacaaaatttgaaaaattcaccAATCGCCAACAATATC
CCACAACTCGAAATTATCCGCCAACCAAAAGGACCCGATGGTTCAATTGG
CTTCTCAAACCATCCTTTGAAGAAATACGTATTGGTACATGCTTACTGAG
AAGCTCCAAGCATCTCTAAAACAGACAATTACAAATAAACTTACATTACC
CTtttcctcaaaaaaacgaaaattatttCCTTCAAAAACACACCATGTAC
ATATATATTTTTaacgattttatttttttggaaactttttacATAATTAT
TTGTTAAACTGAAaatattgtattgtattttaagaaaattctaaatatga
aaaaaaatgatgcaaaatgtaaaggagattttcattttttattgtcttta
attttaaattaaGAAGAAATTCTAAGTGCTTCCTATAATGGTAAAGAAAT
TGTGAAAGAAGATAATTATTTTGTAAATCTGCAAGGATTTCAAAATACCA
TCAAAGTAATTAAATTTAATGATACTATTTTGGTTGAGGAAAGGATATTC
GATtcgatttgc

Coding sequence (CDS) from alignment at scaffold_360:104048..106259

>TCONS_00061839 ID=TCONS_00061839|Name=TCONS_00061839|organism=Clytia hemisphaerica|type=CDS|length=1497bp|location=Sequence derived from alignment at scaffold_360:104048..106259 (Clytia hemisphaerica)
ATGGCTTCAGAACAAGTACCAGAGATTCAAGTGGAATTCCAAAAAGTTGA
ATTGGAACGACATGAAGATGGCTTCACTACAAGCTCTTCTGATGAAGAAC
GAAGATCCCCGACGGCCATGCGGACAATCAAACTGGTCCCGCGCGCACAA
TTCGAACGCTTAGATTCAGGTTCGTCCATTGGTGAAGAGGAGGATCCACA
AGAGCTGACAGAAGAACTCCGTGAGAAAATCATCATCCAAGCTGAATATT
ATTTCTCTGATGAAAACCTGAAGAAAGATGGATTCCTTTTGAAGCACGTC
AAACGAAACAAAGAAGGCTTCGTCAACCTGAAGCTTCTTGCTTCCTTCAA
AAAGATGAGATCGTTGAGCCGTGATTATCGTGTTATCGGTGAAGCATTGA
AAGACTCCAAAGAGCTTGTTATCAACGAGACAGGTTTGAAATTGAAACGA
GTGACACCGCTACCAAAAGAACTTTTAGATCAAGCTCGTGTCAAACATAT
TGTCCTCACCAAAATCCCAAACGAGAATCCTTCAATGAATTACATCAATG
AAGCCTTTGAAGGTCACAAAGATGATGTCGTTTCTGTCAGAATTATCAAA
CCTGGAAAGAAATTCCCTAACGATTTACAATCCCATTTCTCAAGACATCC
AGAGCTTCGTGAAGAAACAGTCGCTGTTGTCGAATTCGAAAATCCAGACA
TTGCCAACGAAGCAATCAAAACCAAATTCTCCAACAAATACCAAGGACTT
CAAGCTAAGTTATTGGAATTGGGACCCAAACAAGCCAAAAAGATCAACAG
CGCCAATAACAGTGACGCCGGAGATTCAGACTCTGCCGTCGAGCGACGTG
GCTCAACCAAAGGGAAACGAAACAGTCGCTTATTGGAGGTATCCGGACAA
GAAGACTATCCGTCATCTGGCGGTTCCGATACCGAATTCTCCGCTTTTAG
CAGCTGTAACAAACGATACAACAGATCCAGAGGAAATTCACCAGCAACAA
GCCCAAAGCTGACTCGAAAGGCTGGTAACTCACCCAACGCTAGCCCCAAA
ACCTCACCTAAAAATGGACGCAAGAACAAAGTCTCACCAGAACGTAAACA
AAGCAGTAACCAACATAAGTTGTCTCCACTCGTCAATGGTGTACAGAAAA
ACAGCCCCAATTCCAGCCCAGAATTCGAACGACGTGGTATAAACAAATCA
AGAAACAACTCATGGAACGAGCGCCGGTCGCGCGGAAATTCATTCGAAGG
TGAATGGCGCGCCAAATCAAGGGGAAACTCATTCAACGAAGACGCACCAT
CTTCGACAAAAGAAGCAGAACTTTCACCATGGTTAAAACGAAGAATGATG
GCCGCCGcagaacaaaatttgaaaaattcaccAATCGCCAACAATATCCC
ACAACTCGAAATTATCCGCCAACCAAAAGGACCCGATGGTTCAATTGGCT
TCTCAAACCATCCTTTGAAGAAATACGTATTGGTACATGCTTACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038792XLOC_038792Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061839-proteinTCONS_00061839-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061839-exon-scaffold_360-1491911889:104048..106259TCONS_00061839-exon-scaffold_360-1491911889:104048..106259Clytia hemisphaericaexon
TCONS_00061839-exon-scaffold_360-1510915933:104048..106259TCONS_00061839-exon-scaffold_360-1510915933:104048..106259Clytia hemisphaericaexon
TCONS_00061839-exon-scaffold_360-1575043694:104048..106259TCONS_00061839-exon-scaffold_360-1575043694:104048..106259Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_360supercontigscaffold_360:104048..106259 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.371958	0.241812	0.942575	0.313927	33.7748	25.6135	62.9872	82.845	264.545	717.428	238.668	1164.01	527.033	499.495	504.078	316.656	147.366	245.532	794.34	685.163	95.4733	245.832	26.8886	33.7143	47.9416	52.0026	663.572	1082.41	705.63	610.966
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002344Lupus_La
IPR006630La_HTH
IPR024642SUZ-C
IPR011991WHTH_DNA-bd_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0030529intracellular ribonucleoprotein complex
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006396 RNA processing
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0005634 nucleus
molecular_function GO:0003723 RNA binding
Blast
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BLAST of TCONS_00061839 vs. Swiss-Prot (Human)
Match: LARP6 (La-related protein 6 OS=Homo sapiens GN=LARP6 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.571e-32
Identity = 131/441 (29.71%), Postives = 207/441 (46.94%), Query Frame = -3 
Query:  450 KIIIQAEYYFSDENLKKDGFLLKHVKRNKEGFVNLKLLASFKKMRSLSRDYRVIGEALKDSKELVINETGLKLKRVTPLP---------KELL--DQARVKHIVLTKIPNEN-----PSMNYINEAFEGHKDDVVSVRIIKPGKKFPNDLQSHFSRHPELREETVAVVEFENPDIANEAIKTKFSNKYQGLQAKLLELGPKQAKKIXXXXXXXXXXXXXAVERRGSTKGKRNSRLLEVSGQEDYPSSGGSDTEFSAFSSCNKRYNRSRGNSPATSPKLTRKAGNSPNASPKTSPKNGRKNKVSPERKQSSNQHKLSPLVNGVQKNSPNSSPEFERRGINKXXXXXXXXXXXXXXSFEGEWRAKSRGNSFNEDAPSSTKEAEL---SPWLKRRM---MAAAEQNLKNSPI-------ANNIPQLEIIRQPKGPDGSIGFSNH 1685
            K++ Q E+YFSDENL+KD FLLKHV+RNK G+V++KLL SFKK++ L+RD+R    ALK S  L +NE   K++R TP+P         K LL  D      +     P +N       M ++ + F G    + SVRI+KPG++ P D++   SR+ ++  +  A+VEFE  + A +A +   +        K + +G K  KK  + + +   +  +++    S     N R+ E+    D         E SA SS +          P ++P            SP    ++   NK+SP   Q+     LSP  N     SP SSP  +R+G+++    +           EG     +    F +    S+  +     SPW++RR    M   E++   SP+       A+ +P + ++R P+GPD + GF  H
Sbjct:   95 KLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRTTAHALKYSVVLELNEDHRKVRRTTPVPLFPNENLPSKMLLVYDLYLSPKLWALATPQKNGRVQEKVMEHLLKLF-GTFGVISSVRILKPGRELPPDIRRISSRYSQVGTQECAIVEFEEVEAAIKAHEFMITESQGKENMKAVLIGMKPPKKKPAKDKNHDEEPTASIHLNKSL----NKRVEELQYMGD---------ESSANSSSD----------PESNP-----------TSPMAGRRHAATNKLSPSGHQNLF---LSP--NASPCTSPWSSPLAQRKGVSRKSPLAE----------EGRLNCSTSPEIFRKCMDYSSDSSVTPSGSPWVRRRRQAEMGTQEKSPGTSPLLSRKMQTADGLP-VGVLRLPRGPDNTRGFHGH 484
The following BLAST results are available for this feature:
BLAST of TCONS_00061839 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LARP61.571e-3229.71La-related protein 6 OS=Homo sapiens GN=LARP6 PE=1... [more]
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