TCONS_00061839-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00061839-protein
Unique NameTCONS_00061839-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length498

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00061839-protein ID=TCONS_00061839-protein|Name=TCONS_00061839-protein|organism=Clytia hemisphaerica|type=polypeptide|length=498bp
MASEQVPEIQVEFQKVELERHEDGFTTSSSDEERRSPTAMRTIKLVPRAQ
FERLDSGSSIGEEEDPQELTEELREKIIIQAEYYFSDENLKKDGFLLKHV
KRNKEGFVNLKLLASFKKMRSLSRDYRVIGEALKDSKELVINETGLKLKR
VTPLPKELLDQARVKHIVLTKIPNENPSMNYINEAFEGHKDDVVSVRIIK
PGKKFPNDLQSHFSRHPELREETVAVVEFENPDIANEAIKTKFSNKYQGL
QAKLLELGPKQAKKINSANNSDAGDSDSAVERRGSTKGKRNSRLLEVSGQ
EDYPSSGGSDTEFSAFSSCNKRYNRSRGNSPATSPKLTRKAGNSPNASPK
TSPKNGRKNKVSPERKQSSNQHKLSPLVNGVQKNSPNSSPEFERRGINKS
RNNSWNERRSRGNSFEGEWRAKSRGNSFNEDAPSSTKEAELSPWLKRRMM
AAAEQNLKNSPIANNIPQLEIIRQPKGPDGSIGFSNHPLKKYVLVHAY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038792XLOC_038792Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00061839TCONS_00061839Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002344Lupus_La
IPR006630La_HTH
IPR024642SUZ-C
IPR011991WHTH_DNA-bd_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0030529intracellular ribonucleoprotein complex
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006396 RNA processing
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0005634 nucleus
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002344Lupus La proteinPRINTSPR00302LUPUSLAcoord: 80..97
score: 59.6
coord: 137..150
score: 29.87
coord: 106..121
score: 30.11
IPR006630La-type HTH domainSMARTSM00715lacoord: 71..151
e-value: 1.8E-34
score: 130.5
IPR006630La-type HTH domainPFAMPF05383Lacoord: 78..134
e-value: 4.1E-21
score: 74.7
IPR006630La-type HTH domainPROSITEPS50961HTH_LAcoord: 67..158
score: 25.772
IPR024642SUZ-C domainPFAMPF12901SUZ-Ccoord: 464..485
e-value: 1.4E-4
score: 21.7
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 60..162
e-value: 9.3E-28
score: 95.4
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 69..158
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 265..442
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..39

Blast
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BLAST of TCONS_00061839-protein vs. Swiss-Prot (Human)
Match: LARP6 (La-related protein 6 OS=Homo sapiens GN=LARP6 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 6.701e-37
Identity = 140/449 (31.18%), Postives = 218/449 (48.55%), Query Frame = 0 
Query:   71 EELREKIIIQAEYYFSDENLKKDGFLLKHVKRNKEGFVNLKLLASFKKMRSLSRDYRVIGEALKDSKELVINETGLKLKRVTPLP---------KELL--DQARVKHIVLTKIPNEN-----PSMNYINEAFEGHKDDVVSVRIIKPGKKFPNDLQSHFSRHPELREETVAVVEFENPDIANEAIKTKF--SNKYQGLQAKLLELGPKQAKKINSANNSDAGDSDSAVERRGSTKGKRNSRLLEVSGQEDYPSS-GGSDTEFSAFS-SCNKRYNRSRGNSPATSPKLTRKAGNSPNASPKTSPKNGRKNKVSP--ERKQSSNQHKLSPLVNGVQKNSPNSSPEFERRGINKSRNNSWNERRSRGNSFEGEWRAKSRGNSFNEDAPSSTKEAELSPWLKRRM---MAAAEQNLKNSPI-------ANNIPQLEIIRQPKGPDGSIGFSNH 487
            EEL +K++ Q E+YFSDENL+KD FLLKHV+RNK G+V++KLL SFKK++ L+RD+R    ALK S  L +NE   K++R TP+P         K LL  D      +     P +N       M ++ + F G    + SVRI+KPG++ P D++   SR+ ++  +  A+VEFE  + A +A +     S   + ++A L+ + P + K     N+ +   +   + +        N R+ E+    D  S+   SD E +  S    +R+  +   SP+    L      SPNASP TSP +      SP  +RK  S +   SPL    + N  ++SPE  R+ ++ S ++S                            PS       SPW++RR    M   E++   SP+       A+ +P + ++R P+GPD + GF  H
Sbjct:   90 EELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRTTAHALKYSVVLELNEDHRKVRRTTPVPLFPNENLPSKMLLVYDLYLSPKLWALATPQKNGRVQEKVMEHLLKLF-GTFGVISSVRILKPGRELPPDIRRISSRYSQVGTQECAIVEFEEVEAAIKAHEFMITESQGKENMKAVLIGMKPPKKKPAKDKNHDEEPTASIHLNK------SLNKRVEELQYMGDESSANSSSDPESNPTSPMAGRRHAATNKLSPSGHQNLFL----SPNASPCTSPWS------SPLAQRKGVSRK---SPLAEEGRLNC-STSPEIFRKCMDYSSDSS--------------------------VTPSG------SPWVRRRRQAEMGTQEKSPGTSPLLSRKMQTADGLP-VGVLRLPRGPDNTRGFHGH 484
The following BLAST results are available for this feature:
BLAST of TCONS_00061839-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LARP66.701e-3731.18La-related protein 6 OS=Homo sapiens GN=LARP6 PE=1... [more]
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