TCONS_00061616 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061616
Unique NameTCONS_00061616
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1316

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061616 ID=TCONS_00061616|Name=TCONS_00061616|organism=Clytia hemisphaerica|type=transcript|length=1316bp
TGAAAATCGAACTTGAGAGGTAGGGTGAAACAATTTTGGTAAAATGTGCT
TTACTTCCAGAGAAGAAGATTCTCAGGAAAATTTGTTGTTGTAAAAAATG
ACACAAAACGAGAACTGACTAACCTATAGGTGTACACAGATTCGTTTACA
TGTCACAGATCATTAAGAGAGATTATATTTCAAGATCGAAATACTATCAG
AGGTTTTCACTCACCACTGGTAAACGTGCGAATAACGAAATATAAAACTC
GAAGATTTTAACATAGTAATACTTTTCTACTTGTAGTTCAAGACCAATAA
TGGGGATGCTACGTCGATTGCTCTTCATTTCGCTATTGATCTCCATTGTC
CAATCACACAAACTTGCAAAAAGATCAACACCATCGTATCGAGTAGAAGG
TTGTTTTCGGTCGGCACCTGGTGGtggaaaatcacaaaatatggGTCATT
CCGCATCTAATGTAAGATGTCAAGATATTTGTCGTGACCATGGCTACATC
CTTGCTGCTACCAAAGGTACAACGTGTCATTGTCGAAACATTTATCCTCA
AGGTCGTAAAGTAGCTGATAGTCAATGTCGAACGAGATGCAGATCTTGGT
TATCGTGTAACAATGCACAAGAATGCTGTGGAGGTTCACAGGCGTACACT
GTCAGTGTGGTGGGAAATATTGATGTTGCAAAGCAAGTTTTGAGAAGGAT
TGCCCATAAATGGCAAGTTAGCACTCATTATCGAAAACACATGAGGAATT
TTGTCAACAAACCACAGTTTAGACACGTAGAAGCTGATTGGTGGAGGAGT
TTTGATGTAAAAGGTTGGAGTAATTGTCCGGATGGAACCTACATGACTGG
TGTTTGGCGTAATAACAATGATCAGGATAATGATGGCATCCACTTGATCG
AACTGGCTGAATGTAAAAGCGCTGCTGCCCATCTGTTTTCGGCTGGAAAG
GGTGATCAAGACTGTTACAAACTCAACATCTGGAAAACATGGGACAGTAG
AAACTGGGCCACCTGCAAAGCTGGTTATTACATGTCGGGAATTTACAATA
CTGAAGGACATCGTTTGCATAATATCGAAGAATTCCACTGCTGTCGACCA
AAATCGCAACACAAAAGCTGGGGAAGTTGCTACAACCACGATGCATGGGC
CTCCTTGAATGATAAAGGTTGGACAAAATGTAACAACGGCTATTATATGG
TTGGTATGTATCGGAATGACTGCAATAATTTGTGGTGTATTGAGGAATTC
AAATGTTGTCAAATGGGAAGTTATAATCAAGATTCGTACGTCGATAAACC
GATCATCACCatcaag
Run BLAST on NCBI

transcript from alignment at scaffold_36:1043820..1045789+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061616 ID=TCONS_00061616|Name=TCONS_00061616|organism=Clytia hemisphaerica|type=transcript|length=1970bp|location=Sequence derived from alignment at scaffold_36:1043820..1045789+ (Clytia hemisphaerica)
TGAAAATCGAACTTGAGAGGTAGGGTGAAACAATTTTGGTAAAATGTGCT
TTACTTCCAGAGAAGAAGATTCTCAGGAAAATTTGTTGTTGTAAAAAATG
ACACAAAACGAGAACTGACTAACCTATAGGTGTACACAGATTCGTTTACA
TGTCACAGATCATTAAGAGAGATTATATTTCAAGATCGAAATACTATCAG
AGGTTTTCACTCACCACTGGTAAACGTGCGAATAACGAAATATAAAACTC
GAAGATTTTAACATAGTAATACTTTTCTACTTGTAGTTCAAGACCAATAA
TGGGGATGCTACGTCGATTGCTCTTCATTTCGCTATTGATCTCCATTGTC
CAATCACACAAACTTGCAAAAAGATCAACACCATCGTATCGAGTAGAAGG
TTGTTTTCGGTCGGCACCTGGTGGtggaaaatcacaaaatatggGTCATT
CCGCATCTAATGTAAGATGTCAAGATATTTGTCGTGACCATGGCTACATC
CTTGCTGCTACCAAAGGTACAACGTGTCATTGTCGAAACATTTATCCTCA
AGGTCGTAAAGTAGCTGATAGTCAATGTCGAACGAGATGCAGATCTTGGT
TATCGTGTAACAATGCACAAGAATGCTGTGGAGGTTCACAGGCGTACACT
GTCAGTGTGGTGGGAAATATTGATGTTGCAAAGCAAGTAAGTTCTAAACT
CAATAGTATGAAATAGGTTGTTTACTTTTATGGTGACCTTTTCCGATTTT
AACAAATACTAACTAATTCCACCCTACAAAACTCGTGAGTTACAGTATCA
ACATAGCAGGgcgtctgaaaaataaaatgcttACTCACAAAAGTAGAAAT
TTTCACCAGATGGTATCCAAAGGttataaaaatcaaagaatggacatttt
ctaaaatattattGGATAACTGAAGTCCACATGCAAATCGGCTTGGTGTC
TTTTAAAGCGCTTTCTAAATTTCAGGTTTTGAGAAGGATTGCCCATAAAT
GGCAAGTTAGCACTCATTATCGAAAACACATGAGGAATTTTGTCAACAAA
CCACAGTTTAGACACGTAGAAGCTGATTGGTGGAGGAGTTTTGATGTAAA
AGGTTGGAGTAATTGTCCGGATGGAACCTACATGACTGGTGTTTGGCGTA
ATAACAATGATCAGGATAATGATGGCATCCACTTGATCGAACTGGCTGAA
TGTAAAAGCGCTGCTGCCCATCTGTTTTCGGGTGAGTTGTCttattttac
acatttttttggGAGAACATCCGGAATTTTTGAAACCgtcggatattctt
aactttttgggtttgaactctaaaaatgttcctaaaaCATGTTAAGTTTG
TATTTTGGTGTGTTTTCCTAAAAAGAAGCCGGGTTTTGAGACCTCAAAGC
CATTGGATGTTCATAAACAAGTTATGAAAGGCGTGAAAAACAATTGCCGT
CTGCTTGATAATTTCATAACTTCATGCGAGATttggagagttccgattta
taATATAGATAATTCGGAAATGCCAACTTATAACGTATGATTATGATATT
TCTTTTTAACTCCCCGTTAATTAATTGTCTCGCTTGTCTTTTTCAGCTGG
AAAGGGTGATCAAGACTGTTACAAACTCAACATCTGGAAAACATGGGACA
GTAGAAACTGGGCCACCTGCAAAGCTGGTTATTACATGTCGGGAATTTAC
AATACTGAAGGACATCGTTTGCATAATATCGAAGAATTCCACTGCTGTCG
ACCAAAATCGCAACACAAAAGCTGGGGAAGTTGCTACAACCACGATGCAT
GGGCCTCCTTGAATGATAAAGGTTGGACAAAATGTAACAACGGCTATTAT
ATGGTTGGTATGTATCGGAATGACTGCAATAATTTGTGGTGTATTGAGGA
ATTCAAATGTTGTCAAATGGGAAGTTATAATCAAGATTCGTACGTCGATA
AACCGATCATCACCatcaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038648XLOC_038648Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061616-exon-scaffold_36-1491911889:1043820..1044505TCONS_00061616-exon-scaffold_36-1491911889:1043820..1044505Clytia hemisphaericaexon
TCONS_00061616-exon-scaffold_36-1510915933:1043820..1044505TCONS_00061616-exon-scaffold_36-1510915933:1043820..1044505Clytia hemisphaericaexon
TCONS_00061616-exon-scaffold_36-1575043694:1043820..1044505TCONS_00061616-exon-scaffold_36-1575043694:1043820..1044505Clytia hemisphaericaexon
TCONS_00061616-exon-scaffold_36-1491911889:1044795..1045050TCONS_00061616-exon-scaffold_36-1491911889:1044795..1045050Clytia hemisphaericaexon
TCONS_00061616-exon-scaffold_36-1510915933:1044795..1045050TCONS_00061616-exon-scaffold_36-1510915933:1044795..1045050Clytia hemisphaericaexon
TCONS_00061616-exon-scaffold_36-1575043694:1044795..1045050TCONS_00061616-exon-scaffold_36-1575043694:1044795..1045050Clytia hemisphaericaexon
TCONS_00061616-exon-scaffold_36-1491911889:1045416..1045789TCONS_00061616-exon-scaffold_36-1491911889:1045416..1045789Clytia hemisphaericaexon
TCONS_00061616-exon-scaffold_36-1510915933:1045416..1045789TCONS_00061616-exon-scaffold_36-1510915933:1045416..1045789Clytia hemisphaericaexon
TCONS_00061616-exon-scaffold_36-1575043694:1045416..1045789TCONS_00061616-exon-scaffold_36-1575043694:1045416..1045789Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:1043820..1045789 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.21169	1.73448	0.351588	0.56086	0	0	0.0832625	0	0	0	0	0	0.182841	0	0.0181982	0	0	0	0	0	0	0.166895	0.844786	0.33696	0	0	0.430925	0	0.508703	0.861142
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061616 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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