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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061534 ID=TCONS_00061534|Name=TCONS_00061534|organism=Clytia hemisphaerica|type=transcript|length=1384bpRun BLAST on NCBI protein sequence of TCONS_00061534-protein >TCONS_00061534-protein ID=TCONS_00061534-protein|Name=TCONS_00061534-protein|organism=Clytia hemisphaerica|type=polypeptide|length=312bp MTSYARDEPRHTDDDEGKLFVGGLAWESNDASIKDYFGQWGPVESVTLKRRun BLAST on NCBI transcript from alignment at scaffold_359:117891..130935- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061534 ID=TCONS_00061534|Name=TCONS_00061534|organism=Clytia hemisphaerica|type=transcript|length=13045bp|location=Sequence derived from alignment at scaffold_359:117891..130935- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_359:117891..130935- >TCONS_00061534 ID=TCONS_00061534|Name=TCONS_00061534|organism=Clytia hemisphaerica|type=CDS|length=10329bp|location=Sequence derived from alignment at scaffold_359:117891..130935- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061534 vs. Swiss-Prot (Human)
Match: HNRPD (Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens GN=HNRNPD PE=1 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.085e-35 Identity = 77/190 (40.53%), Postives = 115/190 (60.53%), Query Frame = 1
Query: 214 YARDEPRHTD-----DDEGKLFVGGLAWESNDASIKDYFGQWGPVESVTLKRNKEDPT--KHRGFCFVKYFHQSSADACLSKKDSHILDGSKIDPKSACPIGVKPEQRTKKIFVGGLQTETTDDALRDYFSQFGEILNNIEYALDHHTKKKRGFCFIEFANEGMVDRIVKDKYHYVAGKKLETKRALTKQ 762
++ PRH++ +E K+F+GGL+W++ +KDYF ++G V TLK DP + RGF FV + S D + +K+ H L+G IDPK A +K ++ KKIFVGGL +T ++ +R+YF FGE+ +IE +D+ T K+RGFCFI F E V +I++ KYH V K E K A++K+
Sbjct: 79 HSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKL---DPITGRSRGFGFVLFKESESVDKVMDQKE-HKLNGKVIDPKRA--KAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEV-ESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 261 The following BLAST results are available for this feature:
BLAST of TCONS_00061534 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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