TCONS_00061534-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00061534-protein
Unique NameTCONS_00061534-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length312

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00061534-protein ID=TCONS_00061534-protein|Name=TCONS_00061534-protein|organism=Clytia hemisphaerica|type=polypeptide|length=312bp
MTSYARDEPRHTDDDEGKLFVGGLAWESNDASIKDYFGQWGPVESVTLKR
NKEDPTKHRGFCFVKYFHQSSADACLSKKDSHILDGSKIDPKSACPIGVK
PEQRTKKIFVGGLQTETTDDALRDYFSQFGEILNNIEYALDHHTKKKRGF
CFIEFANEGMVDRIVKDKYHYVAGKKLETKRALTKQQQQEMAAQSATTRL
PARAAALSYAGLPIATAGAAYAQPVIYIHPDSLSTSYPLQALGITAGLSA
GYPVASTGYTTSLESLYSPYGGTTGARDSRDSRDSRPAPVLRWINPALIP
RFPLPPKPLKSP
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038605XLOC_038605Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00061534TCONS_00061534Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 107..180
e-value: 2.3E-14
score: 63.7
coord: 18..92
e-value: 3.1E-18
score: 76.6
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 108..170
e-value: 4.1E-14
score: 52.1
coord: 19..89
e-value: 3.2E-15
score: 55.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 17..104
score: 14.044
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 106..184
score: 14.01
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 105..194
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 11..95
NoneNo IPR availableGENE3D3.30.70.330coord: 2..96
e-value: 8.3E-18
score: 64.1
NoneNo IPR availableGENE3D3.30.70.330coord: 100..198
e-value: 1.9E-18
score: 66.1

Blast
[Close]
BLAST of TCONS_00061534-protein vs. Swiss-Prot (Human)
Match: HNRPD (Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens GN=HNRNPD PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.990e-37
Identity = 77/190 (40.53%), Postives = 115/190 (60.53%), Query Frame = 0 
Query:    4 YARDEPRHTD-----DDEGKLFVGGLAWESNDASIKDYFGQWGPVESVTLKRNKEDPT--KHRGFCFVKYFHQSSADACLSKKDSHILDGSKIDPKSACPIGVKPEQRTKKIFVGGLQTETTDDALRDYFSQFGEILNNIEYALDHHTKKKRGFCFIEFANEGMVDRIVKDKYHYVAGKKLETKRALTKQ 186
            ++   PRH++      +E K+F+GGL+W++    +KDYF ++G V   TLK    DP   + RGF FV +    S D  + +K+ H L+G  IDPK A  +  K ++  KKIFVGGL  +T ++ +R+YF  FGE+  +IE  +D+ T K+RGFCFI F  E  V +I++ KYH V   K E K A++K+
Sbjct:   79 HSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKL---DPITGRSRGFGFVLFKESESVDKVMDQKE-HKLNGKVIDPKRAKAM--KTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEV-ESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 261
The following BLAST results are available for this feature:
BLAST of TCONS_00061534-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HNRPD3.990e-3740.53Heterogeneous nuclear ribonucleoprotein D0 OS=Homo... [more]
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