TCONS_00061519 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061519
Unique NameTCONS_00061519
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1270

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061519 ID=TCONS_00061519|Name=TCONS_00061519|organism=Clytia hemisphaerica|type=transcript|length=1270bp
GTTCTCGTCCTTTATATTAAACCCCTGGTTAATATGTCCTTTCTTATTAC
CAAAGTCATCTGCAATAGTAGAAAGTGAGGCTAGATACTCGACTGCTTTG
TCTGGTATAACATAGATTTTCTTTTCACCTCCACTGATACTTGAAATCCG
TTTCCATATACATAAATAAATTACCAGTAATATAATGCAGGGAGCGATAT
AGCTCAAGACTACAACTATAGATGTTACAGTAAtatcattttgatagaaa
tgtACGTAACATTCGCTCGATGCCATGAATCTATCAGGGTCTTCCTCAGT
ATAGGGGTAGATCAGGATGGGTAGCGGCCAGACCAAAACTGGTAGCAACC
ATATAAGAATCACACATCGTTTCATGAATCGAGCATCGCATTTCACTTTA
TGAGTCATCGGGTGAAATATCGATCCAAATCGATCAAATGCGATGAAAAT
GAGACAAAGATTTGATACTGTTATTAGATAGTGATCTAAAACCAACCATG
TGTAGCAGAAACCCGAGCCTAGCGGCCAGTGACCAATCATTAGTAAAATG
GTATAAGGATTTATTGAAATCAAACCCACGAGTAGATCTGCTACAGCTAG
GGAAAGTATAAAATAATATTTGGGCttttgtagtttttttgttgctttga
aAACGTAGATGACAATTGCGTTTGGGATCATAATTGAAAAACTCAAGACG
ACCAGACCAAATCCAATAAGTGATAATTCTAAATCTATAGTTTGGTTTGG
GTTCATTTTTTCGTCTATAGACAGGTTATTTGATGTTGCGTTCATCATTT
TGGTTTTGTTACTTTCCtagaaaaaaacatcaaatgttAAGTTTAAAGAA
CACCATTTACAGGGaaattaaagtagtaaaatgtaaacattgcaccagcc
acgtgtcattaaagagaacaattaaaatcacgtgtccaaaacaaacttgt
aaaacaattgaacaatcaaaattagccatatttggtttcattttttattt
tgacatgtgacatttgttttgattttgtatccgctgcatacagtttgttt
acaaatttcgcaagtactttaatgtccctttaacacATCTCCTACCATTC
TcctaaaaaatactttttcacaTGAAAGAAAGAACAACTTTCTCCTGTAC
CACGTAGCGTAACCAAGGGGCGTGCAAAATAGACCTTatgggagtttttg
atttttctgaaaaagcgatgcattgtgggattgtttcgagtgcattacaa
tagaattccctcgaggaatt
Run BLAST on NCBI

transcript from alignment at scaffold_359:100499..101768+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061519 ID=TCONS_00061519|Name=TCONS_00061519|organism=Clytia hemisphaerica|type=transcript|length=1270bp|location=Sequence derived from alignment at scaffold_359:100499..101768+ (Clytia hemisphaerica)
GTTCTCGTCCTTTATATTAAACCCCTGGTTAATATGTCCTTTCTTATTAC
CAAAGTCATCTGCAATAGTAGAAAGTGAGGCTAGATACTCGACTGCTTTG
TCTGGTATAACATAGATTTTCTTTTCACCTCCACTGATACTTGAAATCCG
TTTCCATATACATAAATAAATTACCAGTAATATAATGCAGGGAGCGATAT
AGCTCAAGACTACAACTATAGATGTTACAGTAAtatcattttgatagaaa
tgtACGTAACATTCGCTCGATGCCATGAATCTATCAGGGTCTTCCTCAGT
ATAGGGGTAGATCAGGATGGGTAGCGGCCAGACCAAAACTGGTAGCAACC
ATATAAGAATCACACATCGTTTCATGAATCGAGCATCGCATTTCACTTTA
TGAGTCATCGGGTGAAATATCGATCCAAATCGATCAAATGCGATGAAAAT
GAGACAAAGATTTGATACTGTTATTAGATAGTGATCTAAAACCAACCATG
TGTAGCAGAAACCCGAGCCTAGCGGCCAGTGACCAATCATTAGTAAAATG
GTATAAGGATTTATTGAAATCAAACCCACGAGTAGATCTGCTACAGCTAG
GGAAAGTATAAAATAATATTTGGGCttttgtagtttttttgttgctttga
aAACGTAGATGACAATTGCGTTTGGGATCATAATTGAAAAACTCAAGACG
ACCAGACCAAATCCAATAAGTGATAATTCTAAATCTATAGTTTGGTTTGG
GTTCATTTTTTCGTCTATAGACAGGTTATTTGATGTTGCGTTCATCATTT
TGGTTTTGTTACTTTCCtagaaaaaaacatcaaatgttAAGTTTAAAGAA
CACCATTTACAGGGaaattaaagtagtaaaatgtaaacattgcaccagcc
acgtgtcattaaagagaacaattaaaatcacgtgtccaaaacaaacttgt
aaaacaattgaacaatcaaaattagccatatttggtttcattttttattt
tgacatgtgacatttgttttgattttgtatccgctgcatacagtttgttt
acaaatttcgcaagtactttaatgtccctttaacacATCTCCTACCATTC
TcctaaaaaatactttttcacaTGAAAGAAAGAACAACTTTCTCCTGTAC
CACGTAGCGTAACCAAGGGGCGTGCAAAATAGACCTTatgggagtttttg
atttttctgaaaaagcgatgcattgtgggattgtttcgagtgcattacaa
tagaattccctcgaggaatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038600XLOC_038600Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061519-exon-scaffold_359-1491911889:100499..101768TCONS_00061519-exon-scaffold_359-1491911889:100499..101768Clytia hemisphaericaexon
TCONS_00061519-exon-scaffold_359-1510915933:100499..101768TCONS_00061519-exon-scaffold_359-1510915933:100499..101768Clytia hemisphaericaexon
TCONS_00061519-exon-scaffold_359-1575043694:100499..101768TCONS_00061519-exon-scaffold_359-1575043694:100499..101768Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_359supercontigscaffold_359:100499..101768 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.566979	0.442145	0.35244	0.398456	1.76881	1.66756	1.28691	1.39601	0.242294	0.788029	0.316577	0.551282	0.284352	0.562645	0.164894	0.283279	0.174321	0.81047	0.897885	1.92784	0.276934	0.603127	0.55283	0.327024	0.260488	0.233631	0.30776	0.198248	0.333544	0.317203
Blast
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BLAST of TCONS_00061519 vs. Swiss-Prot (Human)
Match: ACM1 (Muscarinic acetylcholine receptor M1 OS=Homo sapiens GN=CHRM1 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 4.860e-20
Identity = 49/139 (35.25%), Postives = 79/139 (56.83%), Query Frame = -2 
Query:  379 NLSIDEKMNPNQTI------DLELSLIGFGLVVLSFSIMIPNAIVIYVFKATKKLQKPKYYFILSLAVADLLVGLISINPYTILLMIGHWPLGSGFCYTWLVLDHYLITVSNLCLIFIAFDRFGSIFHPMTHKVKCDAR 777
            N S    ++PN T+        +++ IG    +LS + +  N +V+  FK   +L+    YF+LSLA ADL++G  S+N YT  L++GHW LG+  C  WL LD+     S + L+ I+FDR+ S+  P++++ K   R
Sbjct:    2 NTSAPPAVSPNITVLAPGKGPWQVAFIGITTGLLSLATVTGNLLVLISFKVNTELKTVNNYFLLSLACADLIIGTFSMNLYTTYLLMGHWALGTLACDLWLALDYVASNASVMNLLLISFDRYFSVTRPLSYRAKRTPR 140
The following BLAST results are available for this feature:
BLAST of TCONS_00061519 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACM14.860e-2035.25Muscarinic acetylcholine receptor M1 OS=Homo sapie... [more]
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