TCONS_00061278 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061278
Unique NameTCONS_00061278
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length323

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061278 ID=TCONS_00061278|Name=TCONS_00061278|organism=Clytia hemisphaerica|type=transcript|length=323bp
CAGAAGGAAATGAGTTAGAGATTTTGATCTGTCCAGAGGGTATCATTCCT
ACATTGACATTTCTACGTGACCACACCAATGCACAGTTCAAATTACTTAT
GGACCTGACCGCTGTGGACTGGCCATCAAAACCATTCCGATTTGAGaTTG
TGTATAACCTTTTATCAATCCGTTACAATCAAAGATGTCGCGTAAAAACA
TACACTGATGAACTTACACCCATTGATTCCGTTTCCCATCTCTTTGAATC
TGCCAACTGGGCTGAACGAGAGGTCTGGGATATGTATGGTGTATTCTTCT
CCAATCATTCCGACTTgagaagt
Run BLAST on NCBI

transcript from alignment at scaffold_355:70783..72733+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061278 ID=TCONS_00061278|Name=TCONS_00061278|organism=Clytia hemisphaerica|type=transcript|length=1951bp|location=Sequence derived from alignment at scaffold_355:70783..72733+ (Clytia hemisphaerica)
CAGAAGGAAATGAGTTAGAGATTTTGATCTGTCCAGAGGGTATCATTCCT
ACATTGACATTTCTACGTGACCACACCAATGCACAGTTCAAATTACTTAT
GGACCTGACCGCTGTGGACTGGCCATCAAAACCATTCCGATTTGAGGTAc
ctattttttcgttttttaaacGCATTTTTAGTTCCAACagtcaggccata
ttttagaaaggtaGGGCAGCATCTGTTGATgtccaaaaagggcacttttt
cttgtgtttttccaCTGAAAAGACTGTTTTTACCAACATTTTAGTGATTT
CAGAAACAGAAGGGGACATCGTCTGGTAGCCGGGcgctaaaagggcatga
aaaattgTCTGACAGTGCTATTTGTTTAAAACTTAGTGTAAGTTTGACCC
AAGTAAATGATTTCCATTGCTTTTTGCAGGATCAGCAACAGATtaatata
atatgtctatgtagATTAGATTTACCCTAACATTAACAACCAGAAACCAT
AatgtttttcctatttttcagaTTGTGTATAACCTTTTATCAATCCGTTA
CAATCAAAGATGTCGCGTAAAAACATACACTGATGAACTTACACCCATTG
ATTCCGTTTCCCATCTCTTTGAATCTGCCAACTGGGCTGAACGAGAGGTA
AGAATAAAGATCTCTAAATTTCTGACTTGAATGTACGTCTCTATGGCAAC
TTTCACTCAGTTGGTTGAAGCCTATCTCTGTCTTGAAGTTACAATAGAAG
tgattggactttttcaaaaaatggtagcAAGAGTCGTGGAAACATCTCTC
TGGTTTTATTTTAAGAATACACACAGTATTCCATTCTCTAGTCTTCTTTT
CTAGAGTTTGATTAAACACGTCAAAATCTTTTTATCGTAACCCCAAATAC
TTCCTGGGAACGATGAAAGAATTTGACGTGTTACCCAGTGACGTGttaca
gactctaaaacaccgatttcttaggaaaatggacaaaactgATCAAAAAA
TGGTGCAAATacgaacatgttaagaacatggcttcaaaaattttggatgt
tctaataaaaaaaagtgcactactacttctattgaaatttcaacattttc
aactgatccaattctttttgtttttacagGTCTGGGATATGTATGGTGTA
TTCTTCTCTAACCATCCCGACTTGAGAAGAATCTTAACTGATTATGGCTT
TGAAGGACATCcattcagaaaagatttcccaCTAGCTGGCTTTTATGAGG
TACTCTTTTGTCCTTTACCGTAGCTTTGGATGGTTTAATAAGCATTTATA
AACTCTGCTAATAGTTTTTAACAGTAGCAGACACTACTTTTGCATTGTGA
ATATTTAGAGAATgtgtaaatctttctttgcaTTTTGTACCccaacttgg
tctaatgtcgacatccctcatccaattccgacaccctttctTCAGAGCTT
CgaaaataatagaaaggtcgaaacgtctctaaagaaggatgtcggaATTA
GTTgggggatgtcgacattagaccaacttatggtattCTGAGAAATCTTG
TGACTgacatgacgtaatgtttttcccaaaaaagaccaGGTGTTTATcac
taattttgaattaaaacaaTACAACTGGGGGTAAATGCCCGGGCAATTTT
GTATTATGAATAAAGTTTTCTAAATAATGCACCGTTCAACGCGTTTAGTA
ATACCACTTTCGGCTCTACACCAGAGCCAATGTTACCATATCATTCATTA
GAACGGAAGTACATGTTTTCCGTAAATACCATGAAAACATAATATGCTCA
TACCCTGCGTGccttaggctgcacgcatcccctctgacacgatttgatat
aggggatgcgtatcttCTGGCACTTTAGTATACATTTTTTATCGAATTAG
ATTTGGGAAATGTATGGTGTATTCTTCTCCAATCATTCCGACTTgagaag
t
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038447XLOC_038447Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061278-exon-scaffold_355-1491911889:70783..70928TCONS_00061278-exon-scaffold_355-1491911889:70783..70928Clytia hemisphaericaexon
TCONS_00061278-exon-scaffold_355-1510915933:70783..70928TCONS_00061278-exon-scaffold_355-1510915933:70783..70928Clytia hemisphaericaexon
TCONS_00061278-exon-scaffold_355-1575043694:70783..70928TCONS_00061278-exon-scaffold_355-1575043694:70783..70928Clytia hemisphaericaexon
TCONS_00061278-exon-scaffold_355-1491911889:71304..71429TCONS_00061278-exon-scaffold_355-1491911889:71304..71429Clytia hemisphaericaexon
TCONS_00061278-exon-scaffold_355-1510915933:71304..71429TCONS_00061278-exon-scaffold_355-1510915933:71304..71429Clytia hemisphaericaexon
TCONS_00061278-exon-scaffold_355-1575043694:71304..71429TCONS_00061278-exon-scaffold_355-1575043694:71304..71429Clytia hemisphaericaexon
TCONS_00061278-exon-scaffold_355-1491911889:71912..71922TCONS_00061278-exon-scaffold_355-1491911889:71912..71922Clytia hemisphaericaexon
TCONS_00061278-exon-scaffold_355-1510915933:71912..71922TCONS_00061278-exon-scaffold_355-1510915933:71912..71922Clytia hemisphaericaexon
TCONS_00061278-exon-scaffold_355-1575043694:71912..71922TCONS_00061278-exon-scaffold_355-1575043694:71912..71922Clytia hemisphaericaexon
TCONS_00061278-exon-scaffold_355-1491911889:72694..72733TCONS_00061278-exon-scaffold_355-1491911889:72694..72733Clytia hemisphaericaexon
TCONS_00061278-exon-scaffold_355-1510915933:72694..72733TCONS_00061278-exon-scaffold_355-1510915933:72694..72733Clytia hemisphaericaexon
TCONS_00061278-exon-scaffold_355-1575043694:72694..72733TCONS_00061278-exon-scaffold_355-1575043694:72694..72733Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_355supercontigscaffold_355:70783..72733 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
184.349	171.572	217.195	237.717	78.6735	61.0449	61.8927	46.8764	61.7322	55.4953	69.0298	77.3891	53.1742	54.5907	83.8264	81.1786	130.869	149.437	58.1426	58.2396	137.029	157.505	94.0633	92.3974	110.267	96.4717	76.9757	73.3574	64.0321	64.3595
Blast
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BLAST of TCONS_00061278 vs. Swiss-Prot (Human)
Match: NDUS3 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial OS=Homo sapiens GN=NDUFS3 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 5.468e-51
Identity = 75/104 (72.12%), Postives = 90/104 (86.54%), Query Frame = 3 
Query:    9 NELEILICPEGIIPTLTFLRDHTNAQFKLLMDLTAVDWPSKPFRFEIVYNLLSIRYNQRCRVKTYTDELTPIDSVSHLFESANWAEREVWDMYGVFFSNHSDLR 320
            NELE+ I P+G+IP LTFLRDHTNAQFK L+DLTAVD P++  RFEIVYNLLS+R+N R RVKTYTDELTPI+S   +F++ANW ERE+WDM+GVFF+NH DLR
Sbjct:   82 NELEVCIHPDGVIPVLTFLRDHTNAQFKSLVDLTAVDVPTRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPIESAVSVFKAANWYEREIWDMFGVFFANHPDLR 185
The following BLAST results are available for this feature:
BLAST of TCONS_00061278 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NDUS35.468e-5172.12NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
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