TCONS_00061277 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061277
Unique NameTCONS_00061277
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1071

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061277 ID=TCONS_00061277|Name=TCONS_00061277|organism=Clytia hemisphaerica|type=transcript|length=1071bp
TTCATAAGTTTGATTTCAGGTCgtaaaaaaataagattaatTAAAAATGG
CTCTTTCAGGGCGATTGTTAGCCCGTAGTTTCAAACTTGTGAAATCATCA
TGCGCAATTGGAAACGCTTCTAAAGACATGACAAGACGGGCCTTAGGTGT
TTCCATTCTTCCAAAAATTCAACCACTTCGTCTATCAAGTACTGCAGTTT
CAACACAAGACGATCCAACGAAGACCAAATTGCTCGAGTTCGGACAATTC
GTTGCTAATTCAATGCCAAAGTATGTGCAAACGTCTCAGGTAACAGAAGG
AAATGAGTTAGAGATTTTGATCTGTCCAGAGGGTATCATTCCTACATTGA
CATTTCTACGTGACCACACCAATGCACAGTTCAAATTACTTATGGACCTG
ACCGCTGTGGACTGGCCATCAAAACCATTCCGATTTGAGaTTGTGTATAA
CCTTTTATCAATCCGTTACAATCAAAGATGTCGCGTAAAAACATACACTG
ATGAACTTACACCCATTGATTCCGTTTCCCATCTCTTTGAATCTGCCAAC
TGGGCTGAACGAGAGGTCTGGGATATGTATGGTGTATTCTTCTCTAACCA
TCCCGACTTGAGAAGAATCTTAACTGATTATGGCTTTGAAGGACATCcat
tcagaaaagatttcccaCTAGCTGGCTTTTATGAGGTTCGGTATGATGAC
GAGTTGAAACGTGTCATTCAAGAACCCGTGGAGTTTGCTCAAGAATTCCG
AAAATTCGATCTCCAATCACCATGGGAACAATTCCCAAACCACAGAAAAG
TCCGGCCAgaaattgaggctgaaattaAAGCGAACGAGAAAAAACCAGAA
GAAGAAAGCGAGaaataatgatgatgatgaaaaaatttcttttcgttttt
tttgtaacaaaaaaacatgtaaatacaaatttgaaatttagaaaaacttt
tttgttttgatatttttacttGTTGTAGTAGGCCTTATGTTTGTGTGTTG
TcaacacccccttctcgcagTAGGCCTAATGTTTGTTTGTTGTCAACTCT
ACTCCTTCTAACAGACGCGGT
Run BLAST on NCBI

protein sequence of TCONS_00061277-protein

>TCONS_00061277-protein ID=TCONS_00061277-protein|Name=TCONS_00061277-protein|organism=Clytia hemisphaerica|type=polypeptide|length=273bp
MALSGRLLARSFKLVKSSCAIGNASKDMTRRALGVSILPKIQPLRLSSTA
VSTQDDPTKTKLLEFGQFVANSMPKYVQTSQVTEGNELEILICPEGIIPT
LTFLRDHTNAQFKLLMDLTAVDWPSKPFRFEIVYNLLSIRYNQRCRVKTY
TDELTPIDSVSHLFESANWAEREVWDMYGVFFSNHPDLRRILTDYGFEGH
PFRKDFPLAGFYEVRYDDELKRVIQEPVEFAQEFRKFDLQSPWEQFPNHR
KVRPEIEAEIKANEKKPEEESEK
Run BLAST on NCBI

transcript from alignment at scaffold_355:69365..73200+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061277 ID=TCONS_00061277|Name=TCONS_00061277|organism=Clytia hemisphaerica|type=transcript|length=3836bp|location=Sequence derived from alignment at scaffold_355:69365..73200+ (Clytia hemisphaerica)
TTCATAAGTTTGATTTCAGGTCgtaaaaaaataagattaatTAAAAATGG
CTCTTTCAGGGCGATTGTTAGCCCGTAGTTTCAAACTTGTGAAATCATCA
TGCGCAATTGGAAACGCTTCTAAAGGtatatcatttttattttgCATGTT
GCCTAGTAAAGAGATTAAAATCCAATGAATTGTCACCAGCAAGAATAGCT
GTAAAACTTGAAATGTAACCAACATCCCACAATATTGACCTCTTGAATGA
TTTCTTGAATTGACATGCTATACATGTTTTAGTATACATCAGTAAACCTT
TTTGAAAAGAGTTTAAAAATAACTCTCATAATATGTAATTTGTATAAAAC
TGTTAAATTGTTTATGTTGCCTTAAAAACTTTATTGAAACCAAACAGCTC
TTGGTACTTTCATTATATcatgaaaaatataatatatttatCCAAACTGC
CATAATTATCTTGAATTCTTGAAATAATAACATAcgttttgaattgtttt
cagACATGACAAGACGGGCCTTAGGTGTTTCCATTCTTCCAAAAATTCAA
CCACTTCGTCTATCAAGTACTGCAGTTTCAACACAAGGTTTTGTAAAACA
TTTATTtccttattcaatttttatacaTTATTCTTCTTTTGAAGAAACAA
TGGCTAAGTGATAAAATGATTGCATTTCAGCTTCAAACTAATGGGTGATT
TTGTTTCTACCTATCTTAGAAACATTAAGTTTTGATGAAAACTGATTGTT
TTAAATCTTCCCAAACTGATATAGTCGTTTTCAGCAGAACGTCATcttat
tgatttgtcttttacaacacaTCAGTTAcagagtaatttgttattcaata
gaccgtCGTCAGTTGTCTCCTAAACAACTATTATGAAATGCGGCTCTTTC
CAAATTTTACTTCATTCATAGACGATCCAACGAAGACCAAATTGCTCGAG
TTCGGACAATTCGTTGCTAATTCAATGCCAAAGTATGTGCAAACGTCTCA
GGTAAGAAATTGTAATCATTACAATGAGATTTCGCAACAAGCCATTGCAT
TCTGATTCATTAGTGCTTTTGAAAGGTATGATTACATAATGATTATCATA
TACATCAATATTAAACATGTTATAAAACCATAAGATGTGCAACCAAAAAT
CAATGGAACTTAACACATACTTTTAAAAACGTTATGGAAAATATATCATC
TTATGCTTCATATTTTGGATCAATTACAAAACGTTGTAGGGTGACAAACA
AAAACTCCTTTCGAAAAAGGGAAACTTATATcctaattaattaaaatttc
gaaattttgaatttagctcTACCTTGTTACAGAGCACTTTGTCACCACAA
GTTACTAATGTTGTTGAACCTAAATAATTATTGAACTTAAACACAATTCG
CTCTATTTCAACAGGTAACAGAAGGAAATGAGTTAGAGATTTTGATCTGT
CCAGAGGGTATCATTCCTACATTGACATTTCTACGTGACCACACCAATGC
ACAGTTCAAATTACTTATGGACCTGACCGCTGTGGACTGGCCATCAAAAC
CATTCCGATTTGAGGTAcctattttttcgttttttaaacGCATTTTTAGT
TCCAACagtcaggccatattttagaaaggtaGGGCAGCATCTGTTGATgt
ccaaaaagggcactttttcttgtgtttttccaCTGAAAAGACTGTTTTTA
CCAACATTTTAGTGATTTCAGAAACAGAAGGGGACATCGTCTGGTAGCCG
GGcgctaaaagggcatgaaaaattgTCTGACAGTGCTATTTGTTTAAAAC
TTAGTGTAAGTTTGACCCAAGTAAATGATTTCCATTGCTTTTTGCAGGAT
CAGCAACAGATtaatataatatgtctatgtagATTAGATTTACCCTAACA
TTAACAACCAGAAACCATAatgtttttcctatttttcagaTTGTGTATAA
CCTTTTATCAATCCGTTACAATCAAAGATGTCGCGTAAAAACATACACTG
ATGAACTTACACCCATTGATTCCGTTTCCCATCTCTTTGAATCTGCCAAC
TGGGCTGAACGAGAGGTAAGAATAAAGATCTCTAAATTTCTGACTTGAAT
GTACGTCTCTATGGCAACTTTCACTCAGTTGGTTGAAGCCTATCTCTGTC
TTGAAGTTACAATAGAAGtgattggactttttcaaaaaatggtagcAAGA
GTCGTGGAAACATCTCTCTGGTTTTATTTTAAGAATACACACAGTATTCC
ATTCTCTAGTCTTCTTTTCTAGAGTTTGATTAAACACGTCAAAATCTTTT
TATCGTAACCCCAAATACTTCCTGGGAACGATGAAAGAATTTGACGTGTT
ACCCAGTGACGTGttacagactctaaaacaccgatttcttaggaaaatgg
acaaaactgATCAAAAAATGGTGCAAATacgaacatgttaagaacatggc
ttcaaaaattttggatgttctaataaaaaaaagtgcactactacttctat
tgaaatttcaacattttcaactgatccaattctttttgtttttacagGTC
TGGGATATGTATGGTGTATTCTTCTCTAACCATCCCGACTTGAGAAGAAT
CTTAACTGATTATGGCTTTGAAGGACATCcattcagaaaagatttcccaC
TAGCTGGCTTTTATGAGGTACTCTTTTGTCCTTTACCGTAGCTTTGGATG
GTTTAATAAGCATTTATAAACTCTGCTAATAGTTTTTAACAGTAGCAGAC
ACTACTTTTGCATTGTGAATATTTAGAGAATgtgtaaatctttctttgca
TTTTGTACCccaacttggtctaatgtcgacatccctcatccaattccgac
accctttctTCAGAGCTTCgaaaataatagaaaggtcgaaacgtctctaa
agaaggatgtcggaATTAGTTgggggatgtcgacattagaccaacttatg
gtattCTGAGAAATCTTGTGACTgacatgacgtaatgtttttcccaaaaa
agaccaGGTGTTTATcactaattttgaattaaaacaaTACAACTGGGGGT
AAATGCCCGGGCAATTTTGTATTATGAATAAAGTTTTCTAAATAATGCAC
CGTTCAACGCGTTTAGTAATACCACTTTCGGCTCTACACCAGAGCCAATG
TTACCATATCATTCATTAGAACGGAAGTACATGTTTTCCGTAAATACCAT
GAAAACATAATATGCTCATACCCTGCGTGccttaggctgcacgcatcccc
tctgacacgatttgatataggggatgcgtatcttCTGGCACTTTAGTATA
CATTTTTTATCGAATTAGATTTGGGAAATGTATGGTGTATTCTTCTCCAA
TCATTCCGACTTgagaagtttaaaaaaaaattttatcgaattagattttt
attttaaagggTTACATTAGTTTATTATATTTCTATCCATTATAATTTAG
GTTCGGTATGATGACGAGTTGAAACGTGTCATTCAAGAACCCGTGGAGTT
TGCTCAAGAATTCCGAAAATTCGATCTCCAATCACCATGGGAACAATTCC
CAAACCACAGAAAAGTCCGGCCAgaaattgaggctgaaattaAAGCGAAC
GAGAAAAAACCAGAAGAAGAAAGCGAGaaataatgatgatgatgaaaaaa
tttcttttcgttttttttgtaacaaaaaaacatgtaaatacaaatttgaa
atttagaaaaacttttttgttttgatatttttacttGTTGTAGTAGGCCT
TATGTTTGTGTGTTGTcaacacccccttctcgcagTAGGCCTAATGTTTG
TTTGTTGTCAACTCTACTCCTTCTAACAGACGCGGT

Coding sequence (CDS) from alignment at scaffold_355:69365..73200+

>TCONS_00061277 ID=TCONS_00061277|Name=TCONS_00061277|organism=Clytia hemisphaerica|type=CDS|length=5754bp|location=Sequence derived from alignment at scaffold_355:69365..73200+ (Clytia hemisphaerica)
ATGGCTCTTTCAGGGCGATTGTTAGCCCGTAGTTTCAAACTTGTGAAATC
ATCATGCGCAATTGGAAACGCTTCTAAAGACATGACAAGACGGGCCTTAG
GTGTTTCCATTCTTCCAAAAATTCAACCACTTCGTCTATCAAGTACTGCA
GTTTCAACACAAGACGATCCAACGAAGACCAAATTGCTCGAGTTCGGACA
ATTCGTTGCTAATTCAATGCCAAAGTATGTGCAAACGTCTCAGGTAACAG
AAGGAAATGAGTTAGAGATTTTGATCTGTCCAGAGGGTATCATTCCTACA
TTGACATTTCTACGTGACCACACCAATGCACAGTTCAAATTACTTATGGA
CCTGACCGCTGTGGACTGGCCATCAAAACCATTCCGATTTGAGaTTGTGT
ATAACCTTTTATCAATCCGTTACAATCAAAGATGTCGCGTAAAAACATAC
ACTGATGAACTTACACCCATTGATTCCGTTTCCCATCTCTTTGAATCTGC
CAACTGGGCTGAACGAGAGGTCTGGGATATGTATGGTGTATTCTTCTCTA
ACCATCCCGACTTGAGAAGAATCTTAACTGATTATGGCTTTGAAGGACAT
CcattcagaaaagatttcccaCTAGCTGGCTTTTATGAGGTTCGGTATGA
TGACGAGTTGAAACGTGTCATTCAAGAACCCGTGGAGTTTGCTCAAGAAT
TCCGAAAATTCGATCTCCAATCACCATGGGAACAATTCCCAAACCACAGA
AAAGTCCGGCCAgaaattgaggctgaaattaAAGCGAACGAGAAAAAACC
AGAAGAAGAAAGCGAGaaataaATGGCTCTTTCAGGGCGATTGTTAGCCC
GTAGTTTCAAACTTGTGAAATCATCATGCGCAATTGGAAACGCTTCTAAA
GACATGACAAGACGGGCCTTAGGTGTTTCCATTCTTCCAAAAATTCAACC
ACTTCGTCTATCAAGTACTGCAGTTTCAACACAAGACGATCCAACGAAGA
CCAAATTGCTCGAGTTCGGACAATTCGTTGCTAATTCAATGCCAAAGTAT
GTGCAAACGTCTCAGGTAACAGAAGGAAATGAGTTAGAGATTTTGATCTG
TCCAGAGGGTATCATTCCTACATTGACATTTCTACGTGACCACACCAATG
CACAGTTCAAATTACTTATGGACCTGACCGCTGTGGACTGGCCATCAAAA
CCATTCCGATTTGAGaTTGTGTATAACCTTTTATCAATCCGTTACAATCA
AAGATGTCGCGTAAAAACATACACTGATGAACTTACACCCATTGATTCCG
TTTCCCATCTCTTTGAATCTGCCAACTGGGCTGAACGAGAGGTCTGGGAT
ATGTATGGTGTATTCTTCTCTAACCATCCCGACTTGAGAAGAATCTTAAC
TGATTATGGCTTTGAAGGACATCcattcagaaaagatttcccaCTAGCTG
GCTTTTATGAGGTTCGGTATGATGACGAGTTGAAACGTGTCATTCAAGAA
CCCGTGGAGTTTGCTCAAGAATTCCGAAAATTCGATCTCCAATCACCATG
GGAACAATTCCCAAACCACAGAAAAGTCCGGCCAgaaattgaggctgaaa
ttaAAGCGAACGAGAAAAAACCAGAAGAAGAAAGCGAGaaataaATGGCT
CTTTCAGGGCGATTGTTAGCCCGTAGTTTCAAACTTGTGAAATCATCATG
CGCAATTGGAAACGCTTCTAAAGACATGACAAGACGGGCCTTAGGTGTTT
CCATTCTTCCAAAAATTCAACCACTTCGTCTATCAAGTACTGCAGTTTCA
ACACAAGACGATCCAACGAAGACCAAATTGCTCGAGTTCGGACAATTCGT
TGCTAATTCAATGCCAAAGTATGTGCAAACGTCTCAGGTAACAGAAGGAA
ATGAGTTAGAGATTTTGATCTGTCCAGAGGGTATCATTCCTACATTGACA
TTTCTACGTGACCACACCAATGCACAGTTCAAATTACTTATGGACCTGAC
CGCTGTGGACTGGCCATCAAAACCATTCCGATTTGAGaTTGTGTATAACC
TTTTATCAATCCGTTACAATCAAAGATGTCGCGTAAAAACATACACTGAT
GAACTTACACCCATTGATTCCGTTTCCCATCTCTTTGAATCTGCCAACTG
GGCTGAACGAGAGGTCTGGGATATGTATGGTGTATTCTTCTCTAACCATC
CCGACTTGAGAAGAATCTTAACTGATTATGGCTTTGAAGGACATCcattc
agaaaagatttcccaCTAGCTGGCTTTTATGAGGTTCGGTATGATGACGA
GTTGAAACGTGTCATTCAAGAACCCGTGGAGTTTGCTCAAGAATTCCGAA
AATTCGATCTCCAATCACCATGGGAACAATTCCCAAACCACAGAAAAGTC
CGGCCAgaaattgaggctgaaattaAAGCGAACGAGAAAAAACCAGAAGA
AGAAAGCGAGaaataaATGGCTCTTTCAGGGCGATTGTTAGCCCGTAGTT
TCAAACTTGTGAAATCATCATGCGCAATTGGAAACGCTTCTAAAGACATG
ACAAGACGGGCCTTAGGTGTTTCCATTCTTCCAAAAATTCAACCACTTCG
TCTATCAAGTACTGCAGTTTCAACACAAGACGATCCAACGAAGACCAAAT
TGCTCGAGTTCGGACAATTCGTTGCTAATTCAATGCCAAAGTATGTGCAA
ACGTCTCAGGTAACAGAAGGAAATGAGTTAGAGATTTTGATCTGTCCAGA
GGGTATCATTCCTACATTGACATTTCTACGTGACCACACCAATGCACAGT
TCAAATTACTTATGGACCTGACCGCTGTGGACTGGCCATCAAAACCATTC
CGATTTGAGaTTGTGTATAACCTTTTATCAATCCGTTACAATCAAAGATG
TCGCGTAAAAACATACACTGATGAACTTACACCCATTGATTCCGTTTCCC
ATCTCTTTGAATCTGCCAACTGGGCTGAACGAGAGGTCTGGGATATGTAT
GGTGTATTCTTCTCTAACCATCCCGACTTGAGAAGAATCTTAACTGATTA
TGGCTTTGAAGGACATCcattcagaaaagatttcccaCTAGCTGGCTTTT
ATGAGGTTCGGTATGATGACGAGTTGAAACGTGTCATTCAAGAACCCGTG
GAGTTTGCTCAAGAATTCCGAAAATTCGATCTCCAATCACCATGGGAACA
ATTCCCAAACCACAGAAAAGTCCGGCCAgaaattgaggctgaaattaAAG
CGAACGAGAAAAAACCAGAAGAAGAAAGCGAGaaataaATGGCTCTTTCA
GGGCGATTGTTAGCCCGTAGTTTCAAACTTGTGAAATCATCATGCGCAAT
TGGAAACGCTTCTAAAGACATGACAAGACGGGCCTTAGGTGTTTCCATTC
TTCCAAAAATTCAACCACTTCGTCTATCAAGTACTGCAGTTTCAACACAA
GACGATCCAACGAAGACCAAATTGCTCGAGTTCGGACAATTCGTTGCTAA
TTCAATGCCAAAGTATGTGCAAACGTCTCAGGTAACAGAAGGAAATGAGT
TAGAGATTTTGATCTGTCCAGAGGGTATCATTCCTACATTGACATTTCTA
CGTGACCACACCAATGCACAGTTCAAATTACTTATGGACCTGACCGCTGT
GGACTGGCCATCAAAACCATTCCGATTTGAGaTTGTGTATAACCTTTTAT
CAATCCGTTACAATCAAAGATGTCGCGTAAAAACATACACTGATGAACTT
ACACCCATTGATTCCGTTTCCCATCTCTTTGAATCTGCCAACTGGGCTGA
ACGAGAGGTCTGGGATATGTATGGTGTATTCTTCTCTAACCATCCCGACT
TGAGAAGAATCTTAACTGATTATGGCTTTGAAGGACATCcattcagaaaa
gatttcccaCTAGCTGGCTTTTATGAGGTTCGGTATGATGACGAGTTGAA
ACGTGTCATTCAAGAACCCGTGGAGTTTGCTCAAGAATTCCGAAAATTCG
ATCTCCAATCACCATGGGAACAATTCCCAAACCACAGAAAAGTCCGGCCA
gaaattgaggctgaaattaAAGCGAACGAGAAAAAACCAGAAGAAGAAAG
CGAGaaataaATGGCTCTTTCAGGGCGATTGTTAGCCCGTAGTTTCAAAC
TTGTGAAATCATCATGCGCAATTGGAAACGCTTCTAAAGACATGACAAGA
CGGGCCTTAGGTGTTTCCATTCTTCCAAAAATTCAACCACTTCGTCTATC
AAGTACTGCAGTTTCAACACAAGACGATCCAACGAAGACCAAATTGCTCG
AGTTCGGACAATTCGTTGCTAATTCAATGCCAAAGTATGTGCAAACGTCT
CAGGTAACAGAAGGAAATGAGTTAGAGATTTTGATCTGTCCAGAGGGTAT
CATTCCTACATTGACATTTCTACGTGACCACACCAATGCACAGTTCAAAT
TACTTATGGACCTGACCGCTGTGGACTGGCCATCAAAACCATTCCGATTT
GAGaTTGTGTATAACCTTTTATCAATCCGTTACAATCAAAGATGTCGCGT
AAAAACATACACTGATGAACTTACACCCATTGATTCCGTTTCCCATCTCT
TTGAATCTGCCAACTGGGCTGAACGAGAGGTCTGGGATATGTATGGTGTA
TTCTTCTCTAACCATCCCGACTTGAGAAGAATCTTAACTGATTATGGCTT
TGAAGGACATCcattcagaaaagatttcccaCTAGCTGGCTTTTATGAGG
TTCGGTATGATGACGAGTTGAAACGTGTCATTCAAGAACCCGTGGAGTTT
GCTCAAGAATTCCGAAAATTCGATCTCCAATCACCATGGGAACAATTCCC
AAACCACAGAAAAGTCCGGCCAgaaattgaggctgaaattaAAGCGAACG
AGAAAAAACCAGAAGAAGAAAGCGAGaaataaATGGCTCTTTCAGGGCGA
TTGTTAGCCCGTAGTTTCAAACTTGTGAAATCATCATGCGCAATTGGAAA
CGCTTCTAAAGACATGACAAGACGGGCCTTAGGTGTTTCCATTCTTCCAA
AAATTCAACCACTTCGTCTATCAAGTACTGCAGTTTCAACACAAGACGAT
CCAACGAAGACCAAATTGCTCGAGTTCGGACAATTCGTTGCTAATTCAAT
GCCAAAGTATGTGCAAACGTCTCAGGTAACAGAAGGAAATGAGTTAGAGA
TTTTGATCTGTCCAGAGGGTATCATTCCTACATTGACATTTCTACGTGAC
CACACCAATGCACAGTTCAAATTACTTATGGACCTGACCGCTGTGGACTG
GCCATCAAAACCATTCCGATTTGAGaTTGTGTATAACCTTTTATCAATCC
GTTACAATCAAAGATGTCGCGTAAAAACATACACTGATGAACTTACACCC
ATTGATTCCGTTTCCCATCTCTTTGAATCTGCCAACTGGGCTGAACGAGA
GGTCTGGGATATGTATGGTGTATTCTTCTCTAACCATCCCGACTTGAGAA
GAATCTTAACTGATTATGGCTTTGAAGGACATCcattcagaaaagatttc
ccaCTAGCTGGCTTTTATGAGGTTCGGTATGATGACGAGTTGAAACGTGT
CATTCAAGAACCCGTGGAGTTTGCTCAAGAATTCCGAAAATTCGATCTCC
AATCACCATGGGAACAATTCCCAAACCACAGAAAAGTCCGGCCAgaaatt
gaggctgaaattaAAGCGAACGAGAAAAAACCAGAAGAAGAAAGCGAGaa
ataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038447XLOC_038447Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061277-proteinTCONS_00061277-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061277-exon-scaffold_355-1491911889:69365..69489TCONS_00061277-exon-scaffold_355-1491911889:69365..69489Clytia hemisphaericaexon
TCONS_00061277-exon-scaffold_355-1510915933:69365..69489TCONS_00061277-exon-scaffold_355-1510915933:69365..69489Clytia hemisphaericaexon
TCONS_00061277-exon-scaffold_355-1575043694:69365..69489TCONS_00061277-exon-scaffold_355-1575043694:69365..69489Clytia hemisphaericaexon
TCONS_00061277-exon-scaffold_355-1491911889:69868..69951TCONS_00061277-exon-scaffold_355-1491911889:69868..69951Clytia hemisphaericaexon
TCONS_00061277-exon-scaffold_355-1510915933:69868..69951TCONS_00061277-exon-scaffold_355-1510915933:69868..69951Clytia hemisphaericaexon
TCONS_00061277-exon-scaffold_355-1575043694:69868..69951TCONS_00061277-exon-scaffold_355-1575043694:69868..69951Clytia hemisphaericaexon
TCONS_00061277-exon-scaffold_355-1491911889:70286..70365TCONS_00061277-exon-scaffold_355-1491911889:70286..70365Clytia hemisphaericaexon
TCONS_00061277-exon-scaffold_355-1510915933:70286..70365TCONS_00061277-exon-scaffold_355-1510915933:70286..70365Clytia hemisphaericaexon
TCONS_00061277-exon-scaffold_355-1575043694:70286..70365TCONS_00061277-exon-scaffold_355-1575043694:70286..70365Clytia hemisphaericaexon
TCONS_00061277-exon-scaffold_355-1491911889:70779..70928TCONS_00061277-exon-scaffold_355-1491911889:70779..70928Clytia hemisphaericaexon
TCONS_00061277-exon-scaffold_355-1510915933:70779..70928TCONS_00061277-exon-scaffold_355-1510915933:70779..70928Clytia hemisphaericaexon
TCONS_00061277-exon-scaffold_355-1575043694:70779..70928TCONS_00061277-exon-scaffold_355-1575043694:70779..70928Clytia hemisphaericaexon
TCONS_00061277-exon-scaffold_355-1491911889:71304..71429TCONS_00061277-exon-scaffold_355-1491911889:71304..71429Clytia hemisphaericaexon
TCONS_00061277-exon-scaffold_355-1510915933:71304..71429TCONS_00061277-exon-scaffold_355-1510915933:71304..71429Clytia hemisphaericaexon
TCONS_00061277-exon-scaffold_355-1575043694:71304..71429TCONS_00061277-exon-scaffold_355-1575043694:71304..71429Clytia hemisphaericaexon
TCONS_00061277-exon-scaffold_355-1491911889:71912..72031TCONS_00061277-exon-scaffold_355-1491911889:71912..72031Clytia hemisphaericaexon
TCONS_00061277-exon-scaffold_355-1510915933:71912..72031TCONS_00061277-exon-scaffold_355-1510915933:71912..72031Clytia hemisphaericaexon
TCONS_00061277-exon-scaffold_355-1575043694:71912..72031TCONS_00061277-exon-scaffold_355-1575043694:71912..72031Clytia hemisphaericaexon
TCONS_00061277-exon-scaffold_355-1491911889:72815..73200TCONS_00061277-exon-scaffold_355-1491911889:72815..73200Clytia hemisphaericaexon
TCONS_00061277-exon-scaffold_355-1510915933:72815..73200TCONS_00061277-exon-scaffold_355-1510915933:72815..73200Clytia hemisphaericaexon
TCONS_00061277-exon-scaffold_355-1575043694:72815..73200TCONS_00061277-exon-scaffold_355-1575043694:72815..73200Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_355supercontigscaffold_355:69365..73200 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
211.038	209.97	257.401	251.636	126.632	102.715	101.77	110.561	131.398	109.597	102.412	139.207	102.786	116.009	108.804	110.827	189.638	193.394	83.0064	85.8768	172.805	165.328	119.881	110.482	128.279	121.131	98.0615	84.1345	75.5851	69.3065
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR010218NADH_DH_suC
IPR001268NADH_UbQ_OxRdtase_30kDa_su
IPR020396NADH_UbQ_OxRdtase_CS
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0016651oxidoreductase activity, acting on NAD(P)H
GO:0008137NADH dehydrogenase (ubiquinone) activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
molecular_function GO:0016651 oxidoreductase activity, acting on NAD(P)H
Blast
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BLAST of TCONS_00061277 vs. Swiss-Prot (Human)
Match: NDUS3 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial OS=Homo sapiens GN=NDUFS3 PE=1 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 6.615e-101
Identity = 147/236 (62.29%), Postives = 179/236 (75.85%), Query Frame = 2 
Query:  134 RRALGVSILPK--------IQPLRLSSTAVSTQ------DDPTKTKLLEFGQFVANSMPKYVQTSQVTEGNELEILICPEGIIPTLTFLRDHTNAQFKLLMDLTAVDWPSKPFRFEIVYNLLSIRYNQRCRVKTYTDELTPIDSVSHLFESANWAEREVWDMYGVFFSNHPDLRRILTDYGFEGHPFRKDFPLAGFYEVRYDDELKRVIQEPVEFAQEFRKFDLQSPWEQFPNHRK 799
            R  LG S L +        + P+R  S    T+      +D    +L  FG++VA  +PKYVQ  QV+  NELE+ I P+G+IP LTFLRDHTNAQFK L+DLTAVD P++  RFEIVYNLLS+R+N R RVKTYTDELTPI+S   +F++ANW ERE+WDM+GVFF+NHPDLRRILTDYGFEGHPFRKDFPL+G+ E+RYDDE+KRV+ EPVE AQEFRKFDL SPWE FP +R+
Sbjct:   12 RGILGASALTRGTGRPSVLLLPVRRESAGADTRPTVRPRNDVAHKQLSAFGEYVAEILPKYVQQVQVSCFNELEVCIHPDGVIPVLTFLRDHTNAQFKSLVDLTAVDVPTRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPIESAVSVFKAANWYEREIWDMFGVFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPVYRQ 247
The following BLAST results are available for this feature:
BLAST of TCONS_00061277 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NDUS36.615e-10162.29NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
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