TCONS_00061277-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00061277-protein
Unique NameTCONS_00061277-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length273

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00061277-protein ID=TCONS_00061277-protein|Name=TCONS_00061277-protein|organism=Clytia hemisphaerica|type=polypeptide|length=273bp
MALSGRLLARSFKLVKSSCAIGNASKDMTRRALGVSILPKIQPLRLSSTA
VSTQDDPTKTKLLEFGQFVANSMPKYVQTSQVTEGNELEILICPEGIIPT
LTFLRDHTNAQFKLLMDLTAVDWPSKPFRFEIVYNLLSIRYNQRCRVKTY
TDELTPIDSVSHLFESANWAEREVWDMYGVFFSNHPDLRRILTDYGFEGH
PFRKDFPLAGFYEVRYDDELKRVIQEPVEFAQEFRKFDLQSPWEQFPNHR
KVRPEIEAEIKANEKKPEEESEK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038447XLOC_038447Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00061277TCONS_00061277Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010218NADH_DH_suC
IPR001268NADH_UbQ_OxRdtase_30kDa_su
IPR020396NADH_UbQ_OxRdtase_CS
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0016651oxidoreductase activity, acting on NAD(P)H
GO:0008137NADH dehydrogenase (ubiquinone) activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
molecular_function GO:0016651 oxidoreductase activity, acting on NAD(P)H
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010218NADH dehydrogenase, subunit CTIGRFAMTIGR01961TIGR01961coord: 92..209
e-value: 6.1E-43
score: 144.2
IPR010218NADH dehydrogenase, subunit CHAMAPMF_01357NDH1_NuoCcoord: 69..218
score: 29.839
IPR001268NADH:ubiquinone oxidoreductase, 30kDa subunitPFAMPF00329Complex1_30kDacoord: 92..210
e-value: 3.3E-43
score: 147.1
IPR001268NADH:ubiquinone oxidoreductase, 30kDa subunitPRODOMPD001581coord: 142..197
e-value: 2.0E-22
score: 262.0
IPR020396NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved sitePROSITEPS00542COMPLEX1_30Kcoord: 171..192
NoneNo IPR availableSUPERFAMILY143243Nqo5-likecoord: 65..243

Blast
[Close]
BLAST of TCONS_00061277-protein vs. Swiss-Prot (Human)
Match: NDUS3 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial OS=Homo sapiens GN=NDUFS3 PE=1 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 9.904e-107
Identity = 152/253 (60.08%), Postives = 189/253 (74.70%), Query Frame = 0 
Query:   30 RRALGVSILPK--------IQPLRLSSTAVSTQ------DDPTKTKLLEFGQFVANSMPKYVQTSQVTEGNELEILICPEGIIPTLTFLRDHTNAQFKLLMDLTAVDWPSKPFRFEIVYNLLSIRYNQRCRVKTYTDELTPIDSVSHLFESANWAEREVWDMYGVFFSNHPDLRRILTDYGFEGHPFRKDFPLAGFYEVRYDDELKRVIQEPVEFAQEFRKFDLQSPWEQFPNHRKVRPEIEAEIKANEKKPE 268
            R  LG S L +        + P+R  S    T+      +D    +L  FG++VA  +PKYVQ  QV+  NELE+ I P+G+IP LTFLRDHTNAQFK L+DLTAVD P++  RFEIVYNLLS+R+N R RVKTYTDELTPI+S   +F++ANW ERE+WDM+GVFF+NHPDLRRILTDYGFEGHPFRKDFPL+G+ E+RYDDE+KRV+ EPVE AQEFRKFDL SPWE FP +R+  P    +++A +KKP+
Sbjct:   12 RGILGASALTRGTGRPSVLLLPVRRESAGADTRPTVRPRNDVAHKQLSAFGEYVAEILPKYVQQVQVSCFNELEVCIHPDGVIPVLTFLRDHTNAQFKSLVDLTAVDVPTRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPIESAVSVFKAANWYEREIWDMFGVFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPVYRQ--PPESLKLEAGDKKPD 262
The following BLAST results are available for this feature:
BLAST of TCONS_00061277-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NDUS39.904e-10760.08NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
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