TCONS_00061129 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00061129
Unique Name	TCONS_00061129
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	981

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_354:1185478..1188683+
coding sequence from alignment at scaffold_354:1185478..1188683+

transcript sequence

>TCONS_00061129 ID=TCONS_00061129|Name=TCONS_00061129|organism=Clytia hemisphaerica|type=transcript|length=981bp
ttagattttacatTAATTTCCcgttttagaaaataaaacattaatATTAG
AACCGAAATGGATGATAAAAAAGTAGGATTTATTGGCGCCGGCAACATGG
CATATGCCATTGGAAAGGCTCTTGTATCGAGCGGTGTTATTAAAGCTGGA
AACATCATGGCTAGTGCTCGAACTAGAACAAGGCTTGATACATGTTGGAA
GGAATTGGGAACCAAATCAACACTTGACAATGAAGAAGTCGTCAAATTTG
CAGATATCATTTTTCTCAGTGTAAAACCTCACCTTATATGTGACGTCAtt
aaacaaatcaaacaaagctCAGGTCCAGCAAAATTATTTATCTCTGTTGC
AGCTGGAATTACGATAGCCACCATCAATGAGACTTTTGGGGTACCAACTC
GTATTGTCCGTACCATGCCCAATACTCCATGTATGGTTGAATGCGGTGTC
ATTGTGTACGCACTAAGCTCGGAATGTCTACCCAGTGATGGTGAAATGAT
CAAAACCATGTTGGATCCTATAGGTTTAATTGAAGAAGTACCTGAAAAAC
AAATCGATTCTGTCACAtctttaatgggatgcagtatAGCATGGTATCAA
ATGGTCATCGAAGCTATGGCAGACGGGGGCGTTAAAAATGGCGTACCGAG
GGCGTTGGCGTATAAAATGGCAGCTAAATCAATGGAAGGATCAGCTAAGT
TGGTATTGGAAACTGGGAACGCGCCAGGAGTGTTGAAAGATCAAGTGACT
TCGCCTGGCGGGTCGACTATTTGTGGATTATACGAATTAGAGCAGAGTGG
CATCAGAGGTGCTTTTATGAAAGCCGTGGACGCTGCCACCAAAAGGAATC
AAGATCTTGGAAAGAAATAGACTCTTTCGTagtttgaaagtaaaattttt
aaattaaacaatattttcttttggaaatagttttgttgattttttaaaga
aaaacgaaaactttCAAATTCAGGCATATAA

Run BLAST on NCBI

protein sequence of TCONS_00061129-protein

>TCONS_00061129-protein ID=TCONS_00061129-protein|Name=TCONS_00061129-protein|organism=Clytia hemisphaerica|type=polypeptide|length=270bp
MDDKKVGFIGAGNMAYAIGKALVSSGVIKAGNIMASARTRTRLDTCWKEL
GTKSTLDNEEVVKFADIIFLSVKPHLICDVIKQIKQSSGPAKLFISVAAG
ITIATINETFGVPTRIVRTMPNTPCMVECGVIVYALSSECLPSDGEMIKT
MLDPIGLIEEVPEKQIDSVTSLMGCSIAWYQMVIEAMADGGVKNGVPRAL
AYKMAAKSMEGSAKLVLETGNAPGVLKDQVTSPGGSTICGLYELEQSGIR
GAFMKAVDAATKRNQDLGKK

Run BLAST on NCBI

transcript from alignment at scaffold_354:1185478..1188683+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00061129 ID=TCONS_00061129|Name=TCONS_00061129|organism=Clytia hemisphaerica|type=transcript|length=3206bp|location=Sequence derived from alignment at scaffold_354:1185478..1188683+ (Clytia hemisphaerica)
ttagattttacatTAATTTCCcgttttagaaaataaaacattaatATTAG
AACCGAAATGGATGATAAAAAAGTAGGATTTATTGGCGCCGGCAACATGG
CATATGCCATTGGAAAGGCTCTTGTATCGAGCGGTGTTATTAAAGCTGGA
AACATCATGGCTAGTGCTCGAACTAGAACAAGGCTTGATACATGTTGGAA
GGTGCGAATGTAATTATTTGTTGAGTAAAatctagcccggggtccacttt
aaagcttttttatactgggtggcgcgattaagtggcccagtagtatatgg
taatatgccattagtatatggtaatatgcttttgcttaggcggactgtaa
aacagtccgtcagattttcgttgtttttgccaggtaaaaaaagaatgaag
cattgattgattgattgattgattgattgattgatttgctTTTTAGGAAT
TGGGAACCAAATCAACACTTGACAATGAAGAAGTCGTCAAATTTGCAGAT
ATCATTTTTCTCAGTGTAAAACCTCACCTTATATGTGACGTCAttaaaca
aatcaaacaaagctCAGGTCCAGCAAAATTATTTATCTCTGTTGCAGCTG
GAATTACGATAGCCACCATCAATGAGgtataatatctttttttgccaTTA
TAGATTTATTCTAGAACATTCACACGGATTTATCACTAGATTGGAGCCTC
TTTAACTCGATCCtgaatgtctctttaactcgaacaaattttttagTTCC
TCcagttaacaatgtcttataTACAAATTCAAGGCTTCAATTTACATAAG
TTATAAGACCTAGGATAAAGtcattctcaaaaattttatgcATGTAAAAG
CTCTACACCGTTACATAGATATTTTTAAGGAGAATAATGGGCCATTCCAA
TTTATTCATACAgaagggtggacgaacattttccaggggataaaagactg
gttttagttcgtccactGTCACTTTGaagtatgaaaagaattttttccaa
gggtttctttgcaaattttgccatctTCCAGGGGATATCCACACacttcc
aaaaatattttttggtgtgaaaaggttcgtcccccccccccccccaaaaa
attttttttggggtgaaaaagttttttttccccccccccccccctgtatg
gatttttaatggaacagcccgaTCTTCAAAAGTAAAGGTtattgaaaaac
tgaaaaaggtGTGCTTAGAAACTGTTTAAACAGTAAAATAATATCAAACT
ACTTCTAAGACAGACTattaatgtatttttttatcttctttaTCCCCAAG
ACTTTTGGGGTACCAACTCGTATTGTCCGTACCATGCCCAATACTCCATG
TATGGTTGAATGCGGTGTCATTGTGTACGCACTAAGCTCGGAATGTCTAC
CCAGTGATGGTGAAATGATCAAAACCATGTTGGATCCTATAGGTGGGtgt
tttttattattctttGCTTATGTTGCGAGTATACGAAGCGCAATTTATGA
TAGTTTACTCTTCAAATCGTTCCGACGATGCATTCGATTGAAAAGCAAGC
CAGGGGGCACTAAGGCAGGTGACGggcacagatttctgtaaagcctgATG
GACTAGATGTCGtactttaagctcttccaagtaAAAAAGCGAATATCGCA
ATAATATtactgctattgttttcgaaaacctgcgaagcttcttattggtc
aagcgctaaAATTCTactgtaatgtcacgtgacctaggtaggattacATA
AGCTCGGTacttttttcagccaaagcacgacatctaaaCGGGTATGTGTG
AGCAATAAGGGTACTGTTTTCCATACCTAATACCCCCggagagccattgt
ttaggtccCAAAAATTGAGCCTACATATGACCGACGCAGTAATTATAAAC
CTCGGAAGTAGACGAGCGAGACGGATCAGAGATATTTTGTTTTACATTTA
AAATGCGGTCAAGGAAATTGCTAGAGTCTCCCCAAAACTGATTATGGGTT
ACCCAAATAATGTGAACGCCAAACTTAATTTTCTCATTCTATTTTATTCA
CCTCTGCTCCAACCAGATGaacgaatttggaaattaaatgtttatttaAC
AATAGTTAAATCGTAGTTCAATTTTAAATCGTCTAAATCACTCATTCCGC
CTGCGGTACTACTGGGCGTCCTGCCTTGCGAGTAGCGTTACTTCTTATTT
GGTTCTGCGCGGTATTGGCTATACTCTGAAAGCACAGATAAGGTTAAGAA
CCACAACGACCAATGTAACGATCCTTTCAGGTTTAATTGAAGAAGTACCT
GAAAAACAAATCGATTCTGTCACAtctttaatgggatgcagtatAGCATG
GTATCAAATGGTCATCGAAGCTATGGCAGACGGGGGCGTTAAAAATGGCG
TACCGAGGGCGTTGGCGTATAAAATGGCAGCTAAATCAATGGAAGGATCA
GCTAAGTTGGTATTGGAAACTGGGAACGCGCCAGGAGTGGTAATTCTCTA
TAATCTATTTAAACTTTTATGTGCCAACTTTATCCTCAATGATATTTCTT
GGTGCTTCGACTTTCTACAATCATGTCGAAATAtgttgagattttagtgt
attttaacgtttttcagaatttaaagttcgggtgaGAATCGCTATTtcag
cacttccactttcttccattaaatatttcgattttggaggggttcggtAC
GGCCtttaggctatattccaagccttattagagcaaatttgagcttctAA
ATCTTTAGATCTTAAAGGTCCtaagttttaagttttgaatCTTAAAATTT
GATCGTGTCCCTACTATTGTATATTTGTTAGTGTCAAAGGTGGACTTTTA
GAATCGACGAGTAACATTTTCAATTCGGAATTGTTATACAGGAGCTCTTC
TCTTGAATTTCTTGTTATTGTGTTATAGTGCTCTTTTTCTTTATTCGTAT
CTTACAGTTGAAAGATCAAGTGACTTCGCCTGGCGGGTCGACTATTTGTG
GATTATACGAATTAGAGCAGAGTGGCATCAGAGGTGCTTTTATGAAAGCC
GTGGACGCTGCCACCAAAAGGAATCAAGATCTTGGAAAGAAATAGACTCT
TTCGTagtttgaaagtaaaatttttaaattaaacaatattttcttttgga
aatagttttgttgattttttaaagaaaaacgaaaactttCAAATTCAGGC
ATATAA

Coding sequence (CDS) from alignment at scaffold_354:1185478..1188683+

>TCONS_00061129 ID=TCONS_00061129|Name=TCONS_00061129|organism=Clytia hemisphaerica|type=CDS|length=4065bp|location=Sequence derived from alignment at scaffold_354:1185478..1188683+ (Clytia hemisphaerica)
ATGGATGATAAAAAAGTAGGATTTATTGGCGCCGGCAACATGGCATATGC
CATTGGAAAGGCTCTTGTATCGAGCGGTGTTATTAAAGCTGGAAACATCA
TGGCTAGTGCTCGAACTAGAACAAGGCTTGATACATGTTGGAAGGAATTG
GGAACCAAATCAACACTTGACAATGAAGAAGTCGTCAAATTTGCAGATAT
CATTTTTCTCAGTGTAAAACCTCACCTTATATGTGACGTCAttaaacaaa
tcaaacaaagctCAGGTCCAGCAAAATTATTTATCTCTGTTGCAGCTGGA
ATTACGATAGCCACCATCAATGAGACTTTTGGGGTACCAACTCGTATTGT
CCGTACCATGCCCAATACTCCATGTATGGTTGAATGCGGTGTCATTGTGT
ACGCACTAAGCTCGGAATGTCTACCCAGTGATGGTGAAATGATCAAAACC
ATGTTGGATCCTATAGGTTTAATTGAAGAAGTACCTGAAAAACAAATCGA
TTCTGTCACAtctttaatgggatgcagtatAGCATGGTATCAAATGGTCA
TCGAAGCTATGGCAGACGGGGGCGTTAAAAATGGCGTACCGAGGGCGTTG
GCGTATAAAATGGCAGCTAAATCAATGGAAGGATCAGCTAAGTTGGTATT
GGAAACTGGGAACGCGCCAGGAGTGTTGAAAGATCAAGTGACTTCGCCTG
GCGGGTCGACTATTTGTGGATTATACGAATTAGAGCAGAGTGGCATCAGA
GGTGCTTTTATGAAAGCCGTGGACGCTGCCACCAAAAGGAATCAAGATCT
TGGAAAGAAATAGATGGATGATAAAAAAGTAGGATTTATTGGCGCCGGCA
ACATGGCATATGCCATTGGAAAGGCTCTTGTATCGAGCGGTGTTATTAAA
GCTGGAAACATCATGGCTAGTGCTCGAACTAGAACAAGGCTTGATACATG
TTGGAAGGAATTGGGAACCAAATCAACACTTGACAATGAAGAAGTCGTCA
AATTTGCAGATATCATTTTTCTCAGTGTAAAACCTCACCTTATATGTGAC
GTCAttaaacaaatcaaacaaagctCAGGTCCAGCAAAATTATTTATCTC
TGTTGCAGCTGGAATTACGATAGCCACCATCAATGAGACTTTTGGGGTAC
CAACTCGTATTGTCCGTACCATGCCCAATACTCCATGTATGGTTGAATGC
GGTGTCATTGTGTACGCACTAAGCTCGGAATGTCTACCCAGTGATGGTGA
AATGATCAAAACCATGTTGGATCCTATAGGTTTAATTGAAGAAGTACCTG
AAAAACAAATCGATTCTGTCACAtctttaatgggatgcagtatAGCATGG
TATCAAATGGTCATCGAAGCTATGGCAGACGGGGGCGTTAAAAATGGCGT
ACCGAGGGCGTTGGCGTATAAAATGGCAGCTAAATCAATGGAAGGATCAG
CTAAGTTGGTATTGGAAACTGGGAACGCGCCAGGAGTGTTGAAAGATCAA
GTGACTTCGCCTGGCGGGTCGACTATTTGTGGATTATACGAATTAGAGCA
GAGTGGCATCAGAGGTGCTTTTATGAAAGCCGTGGACGCTGCCACCAAAA
GGAATCAAGATCTTGGAAAGAAATAGATGGATGATAAAAAAGTAGGATTT
ATTGGCGCCGGCAACATGGCATATGCCATTGGAAAGGCTCTTGTATCGAG
CGGTGTTATTAAAGCTGGAAACATCATGGCTAGTGCTCGAACTAGAACAA
GGCTTGATACATGTTGGAAGGAATTGGGAACCAAATCAACACTTGACAAT
GAAGAAGTCGTCAAATTTGCAGATATCATTTTTCTCAGTGTAAAACCTCA
CCTTATATGTGACGTCAttaaacaaatcaaacaaagctCAGGTCCAGCAA
AATTATTTATCTCTGTTGCAGCTGGAATTACGATAGCCACCATCAATGAG
ACTTTTGGGGTACCAACTCGTATTGTCCGTACCATGCCCAATACTCCATG
TATGGTTGAATGCGGTGTCATTGTGTACGCACTAAGCTCGGAATGTCTAC
CCAGTGATGGTGAAATGATCAAAACCATGTTGGATCCTATAGGTTTAATT
GAAGAAGTACCTGAAAAACAAATCGATTCTGTCACAtctttaatgggatg
cagtatAGCATGGTATCAAATGGTCATCGAAGCTATGGCAGACGGGGGCG
TTAAAAATGGCGTACCGAGGGCGTTGGCGTATAAAATGGCAGCTAAATCA
ATGGAAGGATCAGCTAAGTTGGTATTGGAAACTGGGAACGCGCCAGGAGT
GTTGAAAGATCAAGTGACTTCGCCTGGCGGGTCGACTATTTGTGGATTAT
ACGAATTAGAGCAGAGTGGCATCAGAGGTGCTTTTATGAAAGCCGTGGAC
GCTGCCACCAAAAGGAATCAAGATCTTGGAAAGAAATAGATGGATGATAA
AAAAGTAGGATTTATTGGCGCCGGCAACATGGCATATGCCATTGGAAAGG
CTCTTGTATCGAGCGGTGTTATTAAAGCTGGAAACATCATGGCTAGTGCT
CGAACTAGAACAAGGCTTGATACATGTTGGAAGGAATTGGGAACCAAATC
AACACTTGACAATGAAGAAGTCGTCAAATTTGCAGATATCATTTTTCTCA
GTGTAAAACCTCACCTTATATGTGACGTCAttaaacaaatcaaacaaagc
tCAGGTCCAGCAAAATTATTTATCTCTGTTGCAGCTGGAATTACGATAGC
CACCATCAATGAGACTTTTGGGGTACCAACTCGTATTGTCCGTACCATGC
CCAATACTCCATGTATGGTTGAATGCGGTGTCATTGTGTACGCACTAAGC
TCGGAATGTCTACCCAGTGATGGTGAAATGATCAAAACCATGTTGGATCC
TATAGGTTTAATTGAAGAAGTACCTGAAAAACAAATCGATTCTGTCACAt
ctttaatgggatgcagtatAGCATGGTATCAAATGGTCATCGAAGCTATG
GCAGACGGGGGCGTTAAAAATGGCGTACCGAGGGCGTTGGCGTATAAAAT
GGCAGCTAAATCAATGGAAGGATCAGCTAAGTTGGTATTGGAAACTGGGA
ACGCGCCAGGAGTGTTGAAAGATCAAGTGACTTCGCCTGGCGGGTCGACT
ATTTGTGGATTATACGAATTAGAGCAGAGTGGCATCAGAGGTGCTTTTAT
GAAAGCCGTGGACGCTGCCACCAAAAGGAATCAAGATCTTGGAAAGAAAT
AGATGGATGATAAAAAAGTAGGATTTATTGGCGCCGGCAACATGGCATAT
GCCATTGGAAAGGCTCTTGTATCGAGCGGTGTTATTAAAGCTGGAAACAT
CATGGCTAGTGCTCGAACTAGAACAAGGCTTGATACATGTTGGAAGGAAT
TGGGAACCAAATCAACACTTGACAATGAAGAAGTCGTCAAATTTGCAGAT
ATCATTTTTCTCAGTGTAAAACCTCACCTTATATGTGACGTCAttaaaca
aatcaaacaaagctCAGGTCCAGCAAAATTATTTATCTCTGTTGCAGCTG
GAATTACGATAGCCACCATCAATGAGACTTTTGGGGTACCAACTCGTATT
GTCCGTACCATGCCCAATACTCCATGTATGGTTGAATGCGGTGTCATTGT
GTACGCACTAAGCTCGGAATGTCTACCCAGTGATGGTGAAATGATCAAAA
CCATGTTGGATCCTATAGGTTTAATTGAAGAAGTACCTGAAAAACAAATC
GATTCTGTCACAtctttaatgggatgcagtatAGCATGGTATCAAATGGT
CATCGAAGCTATGGCAGACGGGGGCGTTAAAAATGGCGTACCGAGGGCGT
TGGCGTATAAAATGGCAGCTAAATCAATGGAAGGATCAGCTAAGTTGGTA
TTGGAAACTGGGAACGCGCCAGGAGTGTTGAAAGATCAAGTGACTTCGCC
TGGCGGGTCGACTATTTGTGGATTATACGAATTAGAGCAGAGTGGCATCA
GAGGTGCTTTTATGAAAGCCGTGGACGCTGCCACCAAAAGGAATCAAGAT
CTTGGAAAGAAATAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_038354	XLOC_038354	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00061129-protein	TCONS_00061129-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_354	supercontig	scaffold_354:1185478..1188683 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
51.3739	51.7578	58.0921	48.2136	7.85076	6.26249	11.0219	12.0933	25.7893	21.4788	30.1929	29.6558	31.8015	32.141	31.9383	38.5996	35.3227	35.8807	6.76259	8.3892	28.0731	24.7004	31.0462	28.4098	33.8318	39.5035	42.8694	39.803	18.7496	16.9991

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000304	Pyrroline-COOH_reductase
IPR028939	P5C_Rdtase_cat_N
IPR029036	P5CR_dimer
IPR008927	6-PGluconate_DH_C-like
IPR016040	NAD(P)-bd_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0004735	pyrroline-5-carboxylate reductase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006561	proline biosynthetic process
GO:0055114	oxidation-reduction process

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006561	proline biosynthetic process
molecular_function	GO:0004735	pyrroline-5-carboxylate reductase activity

Blast

[Close]

BLAST of TCONS_00061129 vs. Swiss-Prot (Human)
Match: P5CR3 (Pyrroline-5-carboxylate reductase 3 OS=Homo sapiens GN=PYCR3 PE=1 SV=3)

HSP 1 Score: 207.223 bits (526), Expect = 4.115e-64
Identity = 104/271 (38.38%), Postives = 173/271 (63.84%), Query Frame = 1

Query:   55 EMDDKKVGFIGAGNMAYAIGKALVSSGVIKAGNIMASARTRTRLDTCWKELGTKSTLDNEEVVKFADIIFLSVKPHLICDVIKQIKQSSGPAKLFISVAAGITIATINETFGVPTRIVRTMPNTPCMVECGVIVYALSSECLPSDGEMIKTMLDPIGLIEEVPEKQIDSVTSLMGCSIAWYQMVIEAMADGGVKNGVPRALAYKMAAKSMEGSAKLVLETGNAPGVLKDQVTSPGGSTICGLYELEQSGIRGAFMKAVDAATKRNQDLGKK 867
            E   ++VGF+GAG MA AI + L+ +G ++A +I+ASA T   L   ++ LG ++T  N+EV++   ++  + KPH++  V+ ++        + +SVAAG++++T+ E     TR++R +PN PC+V+ G IV A       S+ ++++ +L+  G  EEVPE  +D  T L G  +A+     EA+A+G VK G+P +LA+++AA+++ G+AK++L  G  P  L+  V +PGG+TI GL+ LEQ G+R A M AV+AAT R ++L +K
Sbjct:    5 EPSPRRVGFVGAGRMAGAIAQGLIRAGKVEAQHILASAPTDRNLCH-FQALGCRTTHSNQEVLQSCLLVIFATKPHVLPAVLAEVAPVVTTEHILVSVAAGVSLSTLEELLPPNTRVLRVLPNLPCVVQEGAIVMARGRHVGSSETKLLQHLLEACGRCEEVPEAYVDIHTGLSGSGVAFVCAFSEALAEGAVKMGMPSSLAHRIAAQTLLGTAKMLLHEGQHPAQLRSDVCTPGGTTIYGLHALEQGGLRAATMSAVEAATCRAKELSRK 274

The following BLAST results are available for this feature:

BLAST of TCONS_00061129 vs. Swiss-Prot (Human)

BLAST of TCONS_00061129 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
P5CR3	4.115e-64	38.38	Pyrroline-5-carboxylate reductase 3 OS=Homo sapien...	[more]

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TCONS_00061129 (transcript) - C. hemisphaerica