|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061122 ID=TCONS_00061122|Name=TCONS_00061122|organism=Clytia hemisphaerica|type=transcript|length=1205bp
GTTTAAAAACAAGAGATAGTTCAAGttgGACATTGATTAGTAAAAATGCC
AGCCATTTCAAATAACTTACGAAACTACATAGAGCTGGTGGAAGAACGGA
ATATATCATACAGGAAATCAGCCATCTTTTGGGACCAGCTGAAAGTATTG
ATGATTATAAGAAAGTGAGATCTGAAATCCAAGATGCAATGTTGGATGAA
CCTTTTACGAGCTCtgttaaaaaattgaagaaacagCGAGCCGCCGAGAA
AAAGGATGCAATTGGTTCGAAATCTACAGATTGTAAGATACAGATCGGGG
GCCAAGACGAAAACGAAGTTTTCCAAAAGACAAACGcactgaaaaatcaa
aagaaaaatcaaaagaaaacagatAGACTACAATTATGGGCTTTAAGTAC
TAATCTGAAAATGGAAGTTTACAAGGATGAGCagaaatggttgaaattta
aaaaagaagaaggaatAACGCGTACTTTTGATGATAGTGAAAGTGTAAAT
GATAGCTGTGAGGATAAAGTGCTGAAAAACAGTGACGGTCGAGCTATGGA
TCAGATTGATTCTGAAAGAACCACCAAATTATCGGAGGAAGAAATGGATT
GGGCTATAGACTTAGACAGACCATTTGAATCACGTAGATCATTTGACCAA
ACAGATGGTGGTAGCATTAAACCAATGCCGAAGTCAACACCAACAAAGCT
TAAAGATGTGCCAGAGAAAGAAATTCCCTTCTTGATGAATAATACAACGG
ATACGAATCATATCAAGCCTGATCATGATTTTATCGCAATTCGAGTGCAA
CCATCTGGTAAATCAAACATAGAATCTAGCTCGAAGTGTTTAAATATACC
ACAGAATCCCGATGTAACTTTGGTGCCACTTACTTCGGAGAAACACCTAA
TTGGCGACCATGAAGACCATAGTCAATTATCTCGACAGAACGCGGTAATC
AGTGATCATTTGAATAACAACGATAACGAAGAATCACTCAAAAACAACTG
AAGgactattttttttaatttaatttgtaTAGGTTCAAAATGTGCtattt
atatccatacaggagGTTGGACAagcatttccagagggtaaattcgaaaa
gaatttccagggggtctaaggaagtcttttttttttctttttttccaggg
tgtaaaaagttattccaaaaattccagtgggtaAATGACTAATTTTCGTT
CGTCA Run BLAST on NCBI protein sequence of TCONS_00061122-protein >TCONS_00061122-protein ID=TCONS_00061122-protein|Name=TCONS_00061122-protein|organism=Clytia hemisphaerica|type=polypeptide|length=270bp
MLDEPFTSSVKKLKKQRAAEKKDAIGSKSTDCKIQIGGQDENEVFQKTNA
LKNQKKNQKKTDRLQLWALSTNLKMEVYKDEQKWLKFKKEEGITRTFDDS
ESVNDSCEDKVLKNSDGRAMDQIDSERTTKLSEEEMDWAIDLDRPFESRR
SFDQTDGGSIKPMPKSTPTKLKDVPEKEIPFLMNNTTDTNHIKPDHDFIA
IRVQPSGKSNIESSSKCLNIPQNPDVTLVPLTSEKHLIGDHEDHSQLSRQ
NAVISDHLNNNDNEESLKNN Run BLAST on NCBI transcript from alignment at scaffold_354:1111732..1114863+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061122 ID=TCONS_00061122|Name=TCONS_00061122|organism=Clytia hemisphaerica|type=transcript|length=3132bp|location=Sequence derived from alignment at scaffold_354:1111732..1114863+ (Clytia hemisphaerica)
GTTTAAAAACAAGAGATAGTTCAAGGTAAGTCTAAAGTTCGAAAGAGACT
TGTTTTTTTTAGGACTAGTTTCTATTTTAGAATTTTCGCTACCGAGTCTG
CTTTTAGTATATTACAATAATGGAGTCTCCTTACTTCGAATAAGATTTTT
GGTTCTATCATCAGTTACTTTAAAAACagctccataactcgaaattcaAC
TTTAACTATAAATCTCTCTAATATAAGTTTGAATATCATAAaactttatt
tcttaggtttcagcagtagcgtagacaggaggggtgcataataattatct
tttcataatataaaaagataattactgtgtcataaaaatctactcCTACA
CAATTTTTGCGTtcctcttgtctacgctactggttTTAGCTCTTTCAACC
ATGATCTTTTACCTTCTAAATGAGATTTAATACTTAATCCTTTAGAATTA
ACTCCACAGATAAATCGTCAAAAATAGGGCGGAAAAGATCGCGGCGATCT
TTTGTACATGCATACTGGTATAGGACCGAAAAAAATGAGAGATCTCACTT
AATGGGTTAAAGACCCTAGCCAATATTTTTGAAGCCTATGTAATCTTTTC
TAAAGAGATTCCATCGTTATTTAGCGGCCAATATAGGTGAAAAGCGGTTT
AAATAAGGACTAGAGCGTAAATCTGACCAAGATTAACCTAGAGCTGGCGT
AAAAAGGGTACGTTAAGCTAGGTGGAAATTTTAATCCCCTGCTTACTATT
ACTACTTTAGTTTTTTTATGTCATGAAACTTATGCCATAGTCTAAGACAA
GTTTTATCTAAaaaggaacaaacgtgaagacgggagtTTTTTCGGGGTAG
CTGTTGTCTTAAAACACAGACTCTATTGTCCGCCacgcaacatattacgt
tttataatatacaaactatgttatatcataataatatattatctGGACGA
AAAGCATCGTCTAATGCGAGTGTGTTTACTCAAGTATTTACTTTGTTTAT
GTATAAGacggatacacgtttttttataagaacatccaaaagttttgaag
ccttcgtaTGTTTTTAGCCTTTagagttttcagcctaaaaatattcttaa
aatgttctaattttCGGCTTTTTTTGAGTACTTTTGTCCATTTactaaga
aattaggtgttttagTGTCcaccaagccttaaaatgttcttaacttgttc
ttaatatcttATTGGCCagtgaagccttatgttcttattaaaaaacgtgt
agtgccCTATATTTACCTACAAACTTACGATTATGACTTCTAATTTTCTA
AATACACTCGCAATAGTGTATTTTacattttgtaatattttgttttgctt
taaGGAGATGGGTTTTACCTCATCCCGGGGAGAGGGCACTCGATTTAAAA
ACAACTGAGCGTGCGGTCTAAAATTAGGCCTTTAATATCGGACCCTTGCA
ctgcagagaaaattttgccaaatttgagtGAGTTTGGGCGGGAAATGGAC
GCTTACGGTGCATCTTCTTGAAAGTCTTTGACTATTCAAGGGCAAAATAT
Gatcagatttttcaaactttacacccttacagtgcaattttttttccttg
ctcatttcgacccttagaGCACTTTGAAAAGCTTGGAAAAAgaaccctta
agggccgcacatACGGTAGATCGTTTACTGTACCATCCTTGGGGGACTTT
ATATAACCTAtggattttgttttttcttttagttgGACATTGATTAGTAA
AAATGCCAGCCATTTCAAATAACTTACGAAACTACATAGAGCTGGTGGAA
GAACGGAATATATCATACAGGAAATCAGCCATCTTTTGGGACCAGGTACA
CAAATATGCCAATATCTCACTAATCATTTTGACCTCTGTTGCGACTGTAT
TATCTGTAATGGAAAGTTCGATTCCAGTGTATGTTGTTCCGATAATCACT
GGGATTGCGACGATGATTTCAAGCATGATCGGTGTCCTTAAACCATACGA
AAAACGAAATGAACAAATGGCTTCTTCAAGGAAATTTAAGAAACTGATGT
TGAATTTAATTTCAGCTGAAAGTATTGATGATTATAAGAAAGTGAGATCT
GAAATCCAAGATGCAATGTTGGATGAACCTTTTACGAGCTCtgttaaaaa
attgaagaaacagCGAGCCGCCGAGAAAAAGGATGCAATTGGTTCGAAAT
CTACAGATTGTAAGATACAGATCGGGGGCCAAGACGAAAACGAAGTTTTC
CAAAAGACAAACGcactgaaaaatcaaaagaaaaatcaaaagaaaacaga
tAGACTACAATTATGGGCTTTAAGTACTAATCTGAAAATGGAAGTTTACA
AGGATGAGCagaaatggttgaaatttaaaaaagaagaaggaatAACGCGT
ACTTTTGATGATAGTGAAAGTGTAAATGATAGCTGTGAGGATAAAGTGCT
GAAAAACAGTGACGGTCGAGCTATGGATCAGATTGATTCTGAAAGAACCA
CCAAATTATCGGAGGAAGAAATGGATTGGGCTATAGACTTAGACAGACCA
TTTGAATCACGTAGATCATTTGACCAAACAGATGGTGGTAGCATTAAACC
AATGCCGAAGTCAACACCAACAAAGCTTAAAGATGTGCCAGAGAAAGAAA
TTCCCTTCTTGATGAATAATACAACGGATACGAATCATATCAAGCCTGAT
CATGATTTTATCGCAATTCGAGTGCAACCATCTGGTAAATCAAACATAGA
ATCTAGCTCGAAGTGTTTAAATATACCACAGAATCCCGATGTAACTTTGG
TGCCACTTACTTCGGAGAAACACCTAATTGGCGACCATGAAGACCATAGT
CAATTATCTCGACAGAACGCGGTAATCAGTGATCATTTGAATAACAACGA
TAACGAAGAATCACTCAAAAACAACTGAAGgactattttttttaatttaa
tttgtaTAGGTTCAAAATGTGCtatttatatccatacaggagGTTGGACA
agcatttccagagggtaaattcgaaaagaatttccagggggtctaaggaa
gtcttttttttttctttttttccagggtgtaaaaagttattccaaaaatt
ccagtgggtaAATGACTAATTTTCGTTCGTCA Coding sequence (CDS) from alignment at scaffold_354:1111732..1114863+ >TCONS_00061122 ID=TCONS_00061122|Name=TCONS_00061122|organism=Clytia hemisphaerica|type=CDS|length=813bp|location=Sequence derived from alignment at scaffold_354:1111732..1114863+ (Clytia hemisphaerica)
ATGTTGGATGAACCTTTTACGAGCTCtgttaaaaaattgaagaaacagCG
AGCCGCCGAGAAAAAGGATGCAATTGGTTCGAAATCTACAGATTGTAAGA
TACAGATCGGGGGCCAAGACGAAAACGAAGTTTTCCAAAAGACAAACGca
ctgaaaaatcaaaagaaaaatcaaaagaaaacagatAGACTACAATTATG
GGCTTTAAGTACTAATCTGAAAATGGAAGTTTACAAGGATGAGCagaaat
ggttgaaatttaaaaaagaagaaggaatAACGCGTACTTTTGATGATAGT
GAAAGTGTAAATGATAGCTGTGAGGATAAAGTGCTGAAAAACAGTGACGG
TCGAGCTATGGATCAGATTGATTCTGAAAGAACCACCAAATTATCGGAGG
AAGAAATGGATTGGGCTATAGACTTAGACAGACCATTTGAATCACGTAGA
TCATTTGACCAAACAGATGGTGGTAGCATTAAACCAATGCCGAAGTCAAC
ACCAACAAAGCTTAAAGATGTGCCAGAGAAAGAAATTCCCTTCTTGATGA
ATAATACAACGGATACGAATCATATCAAGCCTGATCATGATTTTATCGCA
ATTCGAGTGCAACCATCTGGTAAATCAAACATAGAATCTAGCTCGAAGTG
TTTAAATATACCACAGAATCCCGATGTAACTTTGGTGCCACTTACTTCGG
AGAAACACCTAATTGGCGACCATGAAGACCATAGTCAATTATCTCGACAG
AACGCGGTAATCAGTGATCATTTGAATAACAACGATAACGAAGAATCACT
CAAAAACAACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061122-exon-scaffold_354-1491911889:1111732..1111756 | TCONS_00061122-exon-scaffold_354-1491911889:1111732..1111756 | Clytia hemisphaerica | exon |
| TCONS_00061122-exon-scaffold_354-1510915933:1111732..1111756 | TCONS_00061122-exon-scaffold_354-1510915933:1111732..1111756 | Clytia hemisphaerica | exon |
| TCONS_00061122-exon-scaffold_354-1575043694:1111732..1111756 | TCONS_00061122-exon-scaffold_354-1575043694:1111732..1111756 | Clytia hemisphaerica | exon |
| TCONS_00061122-exon-scaffold_354-1491911889:1113464..1113576 | TCONS_00061122-exon-scaffold_354-1491911889:1113464..1113576 | Clytia hemisphaerica | exon |
| TCONS_00061122-exon-scaffold_354-1510915933:1113464..1113576 | TCONS_00061122-exon-scaffold_354-1510915933:1113464..1113576 | Clytia hemisphaerica | exon |
| TCONS_00061122-exon-scaffold_354-1575043694:1113464..1113576 | TCONS_00061122-exon-scaffold_354-1575043694:1113464..1113576 | Clytia hemisphaerica | exon |
| TCONS_00061122-exon-scaffold_354-1491911889:1113797..1114863 | TCONS_00061122-exon-scaffold_354-1491911889:1113797..1114863 | Clytia hemisphaerica | exon |
| TCONS_00061122-exon-scaffold_354-1510915933:1113797..1114863 | TCONS_00061122-exon-scaffold_354-1510915933:1113797..1114863 | Clytia hemisphaerica | exon |
| TCONS_00061122-exon-scaffold_354-1575043694:1113797..1114863 | TCONS_00061122-exon-scaffold_354-1575043694:1113797..1114863 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_354 | supercontig | scaffold_354:1111732..1114863 + |
Blast
The following BLAST results are available for this feature:
|
