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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061101 ID=TCONS_00061101|Name=TCONS_00061101|organism=Clytia hemisphaerica|type=transcript|length=4316bpRun BLAST on NCBI protein sequence of TCONS_00061101-protein >TCONS_00061101-protein ID=TCONS_00061101-protein|Name=TCONS_00061101-protein|organism=Clytia hemisphaerica|type=polypeptide|length=670bp MGDYGPTTTTTNTSSFEPFNADIFKEAKLQKELNDSKDSDEGFSSSFSPTRun BLAST on NCBI transcript from alignment at scaffold_354:800342..808537+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061101 ID=TCONS_00061101|Name=TCONS_00061101|organism=Clytia hemisphaerica|type=transcript|length=8196bp|location=Sequence derived from alignment at scaffold_354:800342..808537+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_354:800342..808537+ >TCONS_00061101 ID=TCONS_00061101|Name=TCONS_00061101|organism=Clytia hemisphaerica|type=CDS|length=16104bp|location=Sequence derived from alignment at scaffold_354:800342..808537+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061101 vs. Swiss-Prot (Human)
Match: CPEB4 (Cytoplasmic polyadenylation element-binding protein 4 OS=Homo sapiens GN=CPEB4 PE=1 SV=1) HSP 1 Score: 505.753 bits (1301), Expect = 1.404e-160 Identity = 233/264 (88.26%), Postives = 245/264 (92.80%), Query Frame = 2
Query: 1724 IERFSRKVFVGGLPPDIDEDEIHASFCRFGPLTVDWPHKAESKSYFPPKGYAFLLYKDEISVQRLIDCCIMQDGKLYLCVSSPTIKDKPVQIRPWNLADADFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDVDPELKYPKGAGRVAFSNQQSYIAAISARFIQLQHGEIDKRVEVKPYVLDDQMCDECHGVRCNGKFAPFFCSNITCLQYYCEQCWAIIHARPGREFHKPLVKEGGDRPRQTSLGLRW 2515
+ER+SRKVFVGGLPPDIDEDEI ASF RFGPL VDWPHKAESKSYFPPKGYAFLL++DE SVQ LID CI +DGKLYLCVSSPTIKDKPVQIRPWNL+D+DFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGID DPELKYPKGAGRVAFSNQQSYIAAISARF+QLQHGEIDKRVEVKPYVLDDQ+CDEC G RC GKFAPFFC+N+TCLQYYCE CWA IH+R GREFHKPLVKEGGDRPR S RW
Sbjct: 467 VERYSRKVFVGGLPPDIDEDEITASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDACIEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPYVLDDQLCDECQGARCGGKFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDRPRHIS--FRW 728 The following BLAST results are available for this feature:
BLAST of TCONS_00061101 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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