TCONS_00061101-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00061101-protein
Unique NameTCONS_00061101-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length670

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00061101-protein ID=TCONS_00061101-protein|Name=TCONS_00061101-protein|organism=Clytia hemisphaerica|type=polypeptide|length=670bp
MGDYGPTTTTTNTSSFEPFNADIFKEAKLQKELNDSKDSDEGFSSSFSPT
SESSMIQGEAISTSLHLWGNNSADKDDQYFINSLAPVSSNSSFLPQSSRR
TAQAPSPIQNVKKPSPALSNYLATNKAAAHSLGVSSNGNDWNQQQPPTQT
SSWPMNPPPPNPIGTNANWNLPHMKNGMSTHTQSAPALQHMNNAQQIAYQ
LQQQKNMLTKTNGIMTNGHSSGNHPFPPNIVHSKNMKNSIRGFPASQVPL
TSTGRAHHHHHNHHHLPHHGNTGIDSTIVEDIGHLTNSFSNLSTSSEHSH
SNSHPANGFSSNHQDRRGEDGMKYSSLESRFLGDVFKSPIDSDNLNNYDA
FRAYNNQKSKGFPRAREDQIVPSIGSSLNGSPRSDLDFGIERFSRKVFVG
GLPPDIDEDEIHASFCRFGPLTVDWPHKAESKSYFPPKGYAFLLYKDEIS
VQRLIDCCIMQDGKLYLCVSSPTIKDKPVQIRPWNLADADFVMDGSQPLD
PRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDVDPELKYPKGAGRV
AFSNQQSYIAAISARFIQLQHGEIDKRVEVKPYVLDDQMCDECHGVRCNG
KFAPFFCSNITCLQYYCEQCWAIIHARPGREFHKPLVKEGGDRPRQTSLG
LRWPLKTTPLGGIPSIPLLQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038336XLOC_038336Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00061101TCONS_00061101Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR032296CEBP_ZZ
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 504..577
e-value: 0.017
score: 22.2
coord: 396..468
e-value: 1.3E-5
score: 34.7
IPR000504RNA recognition motif domainPFAMPF16367RRM_7coord: 394..483
e-value: 2.3E-32
score: 110.9
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 395..482
score: 10.701
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 503..581
score: 9.013
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 394..564
NoneNo IPR availableGENE3D3.30.70.330coord: 391..496
e-value: 2.0E-12
score: 46.7
NoneNo IPR availableGENE3D3.30.70.330coord: 497..602
e-value: 5.3E-4
score: 19.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 88..116
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 250..275
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 132..165
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 289..320
NoneNo IPR availableCDDcd12724RRM1_CPEB2_likecoord: 395..486
e-value: 2.19268E-64
score: 208.07
NoneNo IPR availableCDDcd12726RRM2_CPEB2_likecoord: 503..583
e-value: 3.46041E-55
score: 182.684
IPR032296Cytoplasmic polyadenylation element-binding protein, ZZ domainPFAMPF16366CEBP_ZZcoord: 576..638
e-value: 1.7E-20
score: 72.9

Blast
[Close]
BLAST of TCONS_00061101-protein vs. Swiss-Prot (Human)
Match: CPEB4 (Cytoplasmic polyadenylation element-binding protein 4 OS=Homo sapiens GN=CPEB4 PE=1 SV=1)

HSP 1 Score: 513.842 bits (1322), Expect = 5.091e-174
Identity = 233/264 (88.26%), Postives = 245/264 (92.80%), Query Frame = 0 
Query:  390 IERFSRKVFVGGLPPDIDEDEIHASFCRFGPLTVDWPHKAESKSYFPPKGYAFLLYKDEISVQRLIDCCIMQDGKLYLCVSSPTIKDKPVQIRPWNLADADFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDVDPELKYPKGAGRVAFSNQQSYIAAISARFIQLQHGEIDKRVEVKPYVLDDQMCDECHGVRCNGKFAPFFCSNITCLQYYCEQCWAIIHARPGREFHKPLVKEGGDRPRQTSLGLRW 653
            +ER+SRKVFVGGLPPDIDEDEI ASF RFGPL VDWPHKAESKSYFPPKGYAFLL++DE SVQ LID CI +DGKLYLCVSSPTIKDKPVQIRPWNL+D+DFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGID DPELKYPKGAGRVAFSNQQSYIAAISARF+QLQHGEIDKRVEVKPYVLDDQ+CDEC G RC GKFAPFFC+N+TCLQYYCE CWA IH+R GREFHKPLVKEGGDRPR  S   RW
Sbjct:  467 VERYSRKVFVGGLPPDIDEDEITASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDACIEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPYVLDDQLCDECQGARCGGKFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDRPRHIS--FRW 728
The following BLAST results are available for this feature:
BLAST of TCONS_00061101-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CPEB45.091e-17488.26Cytoplasmic polyadenylation element-binding protei... [more]
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