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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060834 ID=TCONS_00060834|Name=TCONS_00060834|organism=Clytia hemisphaerica|type=transcript|length=948bp
TGGGACAGAGATGGATGAGTGAATGAAATAAACTTCGATGACAAATTATG
CATGTGAATGAAAAACAGAGCCAGAAGGTGATAAAGATCTTGTCTAAAAT
CCTTTACAAGCGATTTCGTGAATCTTCTAAAATAATGGCATCGGCTTCTA
GTAAGGGCGCTGGAAATACAATTGAATTTAGAAACATTAACATTAAAACA
AAACCACCCATCGAGCTGAATCGTTTGGCGGTAGAAATCGAACGCCCAAA
ATTCAATATGGGAAACATTGTGAACGCAATCGGGGAAATCGGTTTGATGG
ATTTAGTCTTATCGATAGAGACACGTGCAGATAGCTTCACAGTTCATCTC
AAAACCTCCGATGCAAAACGTTTGATTCTACACAAGAACCCGTTGATGTT
CATCGATGCCTTTAACGGTAAAAGAGAATTTGTGATTGAATTTAGCGGTA
TACCAGTTGAGTATGGATCAGTCCGGGTTGCGGaatttgcaaattatttt
ggtgatttttacaaaattggtCGTGTGAAAAGTGAAGAAAACGGGCTCTC
ATTTTGGAATGGTAAATGGTCTGTTACTTATTCTAAAATCTGGGTTGAGC
TTTCTAAACAAGTTGTGCTGGATAGTTTGTATGTTGTTAAACTGGTTTTT
GATGAAGTTGAAGCAAAAGAGATGTTTCGTATTTATCAAGAGGAGACCGC
ACCGGTATCGAGCGACACTGAATACGAGTATCTTACGGAATATGAGACAA
ATGGGATTGTAAGGAAACGTCGAAATAAGAAACGCGTAAAACGCATTACG
AAACATTACGAAAATTCATTACTGAAAGGGGTTGATTGTTGTAAGAAAAC
ATTGAGCCCTTTAACAAAACAATCCTCGACTAAAATCACAGatgtcaaaa
aatcttaatcACGCAAAATTTTATGAACAAAATAGTAGTCTTCtgaga Run BLAST on NCBI protein sequence of TCONS_00060834-protein >TCONS_00060834-protein ID=TCONS_00060834-protein|Name=TCONS_00060834-protein|organism=Clytia hemisphaerica|type=polypeptide|length=286bp
MHVNEKQSQKVIKILSKILYKRFRESSKIMASASSKGAGNTIEFRNINIK
TKPPIELNRLAVEIERPKFNMGNIVNAIGEIGLMDLVLSIETRADSFTVH
LKTSDAKRLILHKNPLMFIDAFNGKREFVIEFSGIPVEYGSVRVAEFANY
FGDFYKIGRVKSEENGLSFWNGKWSVTYSKIWVELSKQVVLDSLYVVKLV
FDEVEAKEMFRIYQEETAPVSSDTEYEYLTEYETNGIVRKRRNKKRVKRI
TKHYENSLLKGVDCCKKTLSPLTKQSSTKITDVKKS Run BLAST on NCBI transcript from alignment at scaffold_349:123758..125296- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060834 ID=TCONS_00060834|Name=TCONS_00060834|organism=Clytia hemisphaerica|type=transcript|length=1539bp|location=Sequence derived from alignment at scaffold_349:123758..125296- (Clytia hemisphaerica)
TGGGACAGAGATGGATGAGTGAATGAAATAAACTTCGATGACAAATTATG
CATGTGAATGAAAAACAGAGCCAGAAGTAAGTTGAAAATTTTTTTCGTTT
TCAACATTCAAGTAATCTTTCTTTACGCTTTTCATGATAACACATTTTGC
GGGAAATTATTTTATTCAAAAATGATTTTTTTTTCTTCTCTGATTGACAA
TTTATAAATGTTTTTCTGTTTTTTATGTAATCTAAACCTCCTCTGAAAAC
CTTATTGACATCTTTAAATTTTGCTTGATTCATATTCGTACTATTGGTCA
GTCTGATTGATTGATTTTGCTAAATTGCACGTTTATGATCTCATGGGAAA
AATTGGCTTATTCTTATTGGCATATCTACCATTTTATGTGCTGATTTGGA
AGAATTTTCAGAAATAAAAGTTGAAAGTCAGAATTAATATACGTGAATGA
ATAAAATAGTTAAATTTTGGTGGACTGAAAGTTTGGCGAATTTTTAGCTA
TTTTGTAAGGTAATTAAAATGTTTTCTCTCCAAAGGTAGGAGTTTCTGTT
TGAAAGAAAGTAGTTCTCACATTATAATGCAGTCTTTAACGCTTAAACCT
AGGACGTGCCATGAGTTGCAAAAATAAACCATATCATAACATATATGTAT
TGCTTTTACTTTTTTAGGGTGATAAAGATCTTGTCTAAAATCCTTTACAA
GCGATTTCGTGAATCTTCTAAAATAATGGCATCGGCTTCTAGTAAGGGCG
CTGGAAATACAATTGAATTTAGAAACATTAACATTAAAACAAAACCACCC
ATCGAGCTGAATCGTTTGGCGGTAGAAATCGAACGCCCAAAATTCAATAT
GGGAAACATTGTGAACGCAATCGGGGAAATCGGTTTGATGGATTTAGTCT
TATCGATAGAGACACGTGCAGATAGCTTCACAGTTCATCTCAAAACCTCC
GATGCAAAACGTTTGATTCTACACAAGAACCCGTTGATGTTCATCGATGC
CTTTAACGGTAAAAGAGAATTTGTGATTGAATTTAGCGGTATACCAGTTG
AGTATGGATCAGTCCGGGTTGCGGAATTTGCAAATTATTTTGGTGATTTT
TACAAAATTGGTCGTGTGAAAAGTGAAGAAAACGGGCTCTCATTTTGGAA
TGGTAAATGGTCTGTTACTTATTCTAAAATCTGGGTTGAGCTTTCTAAAC
AAGTTGTGCTGGATAGTTTGTATGTTGTTAAACTGGTTTTTGATGAAGTT
GAAGCAAAAGAGATGTTTCGTATTTATCAAGAGGAGACCGCACCGGTATC
GAGCGACACTGAATACGAGTATCTTACGGAATATGAGACAAATGGGATTG
TAAGGAAACGTCGAAATAAGAAACGCGTAAAACGCATTACGAAACATTAC
GAAAATTCATTACTGAAAGGGGTTGATTGTTGTAAGAAAACATTGAGCCC
TTTAACAAAACAATCCTCGACTAAAATCACAGATGTCAAAAAATCTTAAT
CACGCAAAATTTTATGAACAAAATAGTAGTCTTCTGAGA Coding sequence (CDS) from alignment at scaffold_349:123758..125296- >TCONS_00060834 ID=TCONS_00060834|Name=TCONS_00060834|organism=Clytia hemisphaerica|type=CDS|length=1722bp|location=Sequence derived from alignment at scaffold_349:123758..125296- (Clytia hemisphaerica)
GGTGATAAAGATCTTGTCTAAAATCCTTTACAAGCGATTTCGTGAATCTT
CTAAAATAATGGCATCGGCTTCTAGTAAGGGCGCTGGAAATACAATTGAA
TTTAGAAACATTAACATTAAAACAAAACCACCCATCGAGCTGAATCGTTT
GGCGGTAGAAATCGAACGCCCAAAATTCAATATGGGAAACATTGTGAACG
CAATCGGGGAAATCGGTTTGATGGATTTAGTCTTATCGATAGAGACACGT
GCAGATAGCTTCACAGTTCATCTCAAAACCTCCGATGCAAAACGTTTGAT
TCTACACAAGAACCCGTTGATGTTCATCGATGCCTTTAACGGTAAAAGAG
AATTTGTGATTGAATTTAGCGGTATACCAGTTGAGTATGGATCAGTCCGG
GTTGCGGAATTTGCAAATTATTTTGGTGATTTTTACAAAATTGGTCGTGT
GAAAAGTGAAGAAAACGGGCTCTCATTTTGGAATGGTAAATGGTCTGTTA
CTTATTCTAAAATCTGGGTTGAGCTTTCTAAACAAGTTGTGCTGGATAGT
TTGTATGTTGTTAAACTGGTTTTTGATGAAGTTGAAGCAAAAGAGATGTT
TCGTATTTATCAAGAGGAGACCGCACCGGTATCGAGCGACACTGAATACG
AGTATCTTACGGAATATGAGACAAATGGGATTGTAAGGAAACGTCGAAAT
AAGAAACGCGTAAAACGCATTACGAAACATTACGAAAATTCATTACTGAA
AGGGGTTGATTGTTGTAAGAAAACATTGAGCCCTTTAACAAAACAATCCT
CGACTAAAATCACAGATGTCAAAAAATCTTAAATGCATGTGAATGAAAAA
CAGAGCCAGAAGGTGATAAAGATCTTGTCTAAAATCCTTTACAAGCGATT
TCGTGAATCTTCTAAAATAATGGCATCGGCTTCTAGTAAGGGCGCTGGAA
ATACAATTGAATTTAGAAACATTAACATTAAAACAAAACCACCCATCGAG
CTGAATCGTTTGGCGGTAGAAATCGAACGCCCAAAATTCAATATGGGAAA
CATTGTGAACGCAATCGGGGAAATCGGTTTGATGGATTTAGTCTTATCGA
TAGAGACACGTGCAGATAGCTTCACAGTTCATCTCAAAACCTCCGATGCA
AAACGTTTGATTCTACACAAGAACCCGTTGATGTTCATCGATGCCTTTAA
CGGTAAAAGAGAATTTGTGATTGAATTTAGCGGTATACCAGTTGAGTATG
GATCAGTCCGGGTTGCGGAATTTGCAAATTATTTTGGTGATTTTTACAAA
ATTGGTCGTGTGAAAAGTGAAGAAAACGGGCTCTCATTTTGGAATGGTAA
ATGGTCTGTTACTTATTCTAAAATCTGGGTTGAGCTTTCTAAACAAGTTG
TGCTGGATAGTTTGTATGTTGTTAAACTGGTTTTTGATGAAGTTGAAGCA
AAAGAGATGTTTCGTATTTATCAAGAGGAGACCGCACCGGTATCGAGCGA
CACTGAATACGAGTATCTTACGGAATATGAGACAAATGGGATTGTAAGGA
AACGTCGAAATAAGAAACGCGTAAAACGCATTACGAAACATTACGAAAAT
TCATTACTGAAAGGGGTTGATTGTTGTAAGAAAACATTGAGCCCTTTAAC
AAAACAATCCTCGACTAAAATCACAGATGTCAAAAAATCTTAAATGCATG
TGAATGAAAAACAGAGCCAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060834-exon-scaffold_349-1575043694:125221..125296 | TCONS_00060834-exon-scaffold_349-1575043694:125221..125296 | Clytia hemisphaerica | exon |
| TCONS_00060834-exon-scaffold_349-1575043694:123758..124629 | TCONS_00060834-exon-scaffold_349-1575043694:123758..124629 | Clytia hemisphaerica | exon |
| TCONS_00060834-exon-scaffold_349-1510915933:125221..125296 | TCONS_00060834-exon-scaffold_349-1510915933:125221..125296 | Clytia hemisphaerica | exon |
| TCONS_00060834-exon-scaffold_349-1510915933:123758..124629 | TCONS_00060834-exon-scaffold_349-1510915933:123758..124629 | Clytia hemisphaerica | exon |
| TCONS_00060834-exon-scaffold_349-1491911889:125221..125296 | TCONS_00060834-exon-scaffold_349-1491911889:125221..125296 | Clytia hemisphaerica | exon |
| TCONS_00060834-exon-scaffold_349-1491911889:123758..124629 | TCONS_00060834-exon-scaffold_349-1491911889:123758..124629 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_349 | supercontig | scaffold_349:123758..125296 - |
Blast
The following BLAST results are available for this feature:
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