TCONS_00060834 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060834
Unique NameTCONS_00060834
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length948

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060834 ID=TCONS_00060834|Name=TCONS_00060834|organism=Clytia hemisphaerica|type=transcript|length=948bp
TGGGACAGAGATGGATGAGTGAATGAAATAAACTTCGATGACAAATTATG
CATGTGAATGAAAAACAGAGCCAGAAGGTGATAAAGATCTTGTCTAAAAT
CCTTTACAAGCGATTTCGTGAATCTTCTAAAATAATGGCATCGGCTTCTA
GTAAGGGCGCTGGAAATACAATTGAATTTAGAAACATTAACATTAAAACA
AAACCACCCATCGAGCTGAATCGTTTGGCGGTAGAAATCGAACGCCCAAA
ATTCAATATGGGAAACATTGTGAACGCAATCGGGGAAATCGGTTTGATGG
ATTTAGTCTTATCGATAGAGACACGTGCAGATAGCTTCACAGTTCATCTC
AAAACCTCCGATGCAAAACGTTTGATTCTACACAAGAACCCGTTGATGTT
CATCGATGCCTTTAACGGTAAAAGAGAATTTGTGATTGAATTTAGCGGTA
TACCAGTTGAGTATGGATCAGTCCGGGTTGCGGaatttgcaaattatttt
ggtgatttttacaaaattggtCGTGTGAAAAGTGAAGAAAACGGGCTCTC
ATTTTGGAATGGTAAATGGTCTGTTACTTATTCTAAAATCTGGGTTGAGC
TTTCTAAACAAGTTGTGCTGGATAGTTTGTATGTTGTTAAACTGGTTTTT
GATGAAGTTGAAGCAAAAGAGATGTTTCGTATTTATCAAGAGGAGACCGC
ACCGGTATCGAGCGACACTGAATACGAGTATCTTACGGAATATGAGACAA
ATGGGATTGTAAGGAAACGTCGAAATAAGAAACGCGTAAAACGCATTACG
AAACATTACGAAAATTCATTACTGAAAGGGGTTGATTGTTGTAAGAAAAC
ATTGAGCCCTTTAACAAAACAATCCTCGACTAAAATCACAGatgtcaaaa
aatcttaatcACGCAAAATTTTATGAACAAAATAGTAGTCTTCtgaga
Run BLAST on NCBI

protein sequence of TCONS_00060834-protein

>TCONS_00060834-protein ID=TCONS_00060834-protein|Name=TCONS_00060834-protein|organism=Clytia hemisphaerica|type=polypeptide|length=286bp
MHVNEKQSQKVIKILSKILYKRFRESSKIMASASSKGAGNTIEFRNINIK
TKPPIELNRLAVEIERPKFNMGNIVNAIGEIGLMDLVLSIETRADSFTVH
LKTSDAKRLILHKNPLMFIDAFNGKREFVIEFSGIPVEYGSVRVAEFANY
FGDFYKIGRVKSEENGLSFWNGKWSVTYSKIWVELSKQVVLDSLYVVKLV
FDEVEAKEMFRIYQEETAPVSSDTEYEYLTEYETNGIVRKRRNKKRVKRI
TKHYENSLLKGVDCCKKTLSPLTKQSSTKITDVKKS
Run BLAST on NCBI

transcript from alignment at scaffold_349:123758..125296-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060834 ID=TCONS_00060834|Name=TCONS_00060834|organism=Clytia hemisphaerica|type=transcript|length=1539bp|location=Sequence derived from alignment at scaffold_349:123758..125296- (Clytia hemisphaerica)
TGGGACAGAGATGGATGAGTGAATGAAATAAACTTCGATGACAAATTATG CATGTGAATGAAAAACAGAGCCAGAAGTAAGTTGAAAATTTTTTTCGTTT TCAACATTCAAGTAATCTTTCTTTACGCTTTTCATGATAACACATTTTGC GGGAAATTATTTTATTCAAAAATGATTTTTTTTTCTTCTCTGATTGACAA TTTATAAATGTTTTTCTGTTTTTTATGTAATCTAAACCTCCTCTGAAAAC CTTATTGACATCTTTAAATTTTGCTTGATTCATATTCGTACTATTGGTCA GTCTGATTGATTGATTTTGCTAAATTGCACGTTTATGATCTCATGGGAAA AATTGGCTTATTCTTATTGGCATATCTACCATTTTATGTGCTGATTTGGA AGAATTTTCAGAAATAAAAGTTGAAAGTCAGAATTAATATACGTGAATGA ATAAAATAGTTAAATTTTGGTGGACTGAAAGTTTGGCGAATTTTTAGCTA TTTTGTAAGGTAATTAAAATGTTTTCTCTCCAAAGGTAGGAGTTTCTGTT TGAAAGAAAGTAGTTCTCACATTATAATGCAGTCTTTAACGCTTAAACCT AGGACGTGCCATGAGTTGCAAAAATAAACCATATCATAACATATATGTAT TGCTTTTACTTTTTTAGGGTGATAAAGATCTTGTCTAAAATCCTTTACAA GCGATTTCGTGAATCTTCTAAAATAATGGCATCGGCTTCTAGTAAGGGCG CTGGAAATACAATTGAATTTAGAAACATTAACATTAAAACAAAACCACCC ATCGAGCTGAATCGTTTGGCGGTAGAAATCGAACGCCCAAAATTCAATAT GGGAAACATTGTGAACGCAATCGGGGAAATCGGTTTGATGGATTTAGTCT TATCGATAGAGACACGTGCAGATAGCTTCACAGTTCATCTCAAAACCTCC GATGCAAAACGTTTGATTCTACACAAGAACCCGTTGATGTTCATCGATGC CTTTAACGGTAAAAGAGAATTTGTGATTGAATTTAGCGGTATACCAGTTG AGTATGGATCAGTCCGGGTTGCGGAATTTGCAAATTATTTTGGTGATTTT TACAAAATTGGTCGTGTGAAAAGTGAAGAAAACGGGCTCTCATTTTGGAA TGGTAAATGGTCTGTTACTTATTCTAAAATCTGGGTTGAGCTTTCTAAAC AAGTTGTGCTGGATAGTTTGTATGTTGTTAAACTGGTTTTTGATGAAGTT GAAGCAAAAGAGATGTTTCGTATTTATCAAGAGGAGACCGCACCGGTATC GAGCGACACTGAATACGAGTATCTTACGGAATATGAGACAAATGGGATTG TAAGGAAACGTCGAAATAAGAAACGCGTAAAACGCATTACGAAACATTAC GAAAATTCATTACTGAAAGGGGTTGATTGTTGTAAGAAAACATTGAGCCC TTTAACAAAACAATCCTCGACTAAAATCACAGATGTCAAAAAATCTTAAT CACGCAAAATTTTATGAACAAAATAGTAGTCTTCTGAGA

Coding sequence (CDS) from alignment at scaffold_349:123758..125296-

>TCONS_00060834 ID=TCONS_00060834|Name=TCONS_00060834|organism=Clytia hemisphaerica|type=CDS|length=1722bp|location=Sequence derived from alignment at scaffold_349:123758..125296- (Clytia hemisphaerica)
GGTGATAAAGATCTTGTCTAAAATCCTTTACAAGCGATTTCGTGAATCTT
CTAAAATAATGGCATCGGCTTCTAGTAAGGGCGCTGGAAATACAATTGAA
TTTAGAAACATTAACATTAAAACAAAACCACCCATCGAGCTGAATCGTTT
GGCGGTAGAAATCGAACGCCCAAAATTCAATATGGGAAACATTGTGAACG
CAATCGGGGAAATCGGTTTGATGGATTTAGTCTTATCGATAGAGACACGT
GCAGATAGCTTCACAGTTCATCTCAAAACCTCCGATGCAAAACGTTTGAT
TCTACACAAGAACCCGTTGATGTTCATCGATGCCTTTAACGGTAAAAGAG
AATTTGTGATTGAATTTAGCGGTATACCAGTTGAGTATGGATCAGTCCGG
GTTGCGGAATTTGCAAATTATTTTGGTGATTTTTACAAAATTGGTCGTGT
GAAAAGTGAAGAAAACGGGCTCTCATTTTGGAATGGTAAATGGTCTGTTA
CTTATTCTAAAATCTGGGTTGAGCTTTCTAAACAAGTTGTGCTGGATAGT
TTGTATGTTGTTAAACTGGTTTTTGATGAAGTTGAAGCAAAAGAGATGTT
TCGTATTTATCAAGAGGAGACCGCACCGGTATCGAGCGACACTGAATACG
AGTATCTTACGGAATATGAGACAAATGGGATTGTAAGGAAACGTCGAAAT
AAGAAACGCGTAAAACGCATTACGAAACATTACGAAAATTCATTACTGAA
AGGGGTTGATTGTTGTAAGAAAACATTGAGCCCTTTAACAAAACAATCCT
CGACTAAAATCACAGATGTCAAAAAATCTTAAATGCATGTGAATGAAAAA
CAGAGCCAGAAGGTGATAAAGATCTTGTCTAAAATCCTTTACAAGCGATT
TCGTGAATCTTCTAAAATAATGGCATCGGCTTCTAGTAAGGGCGCTGGAA
ATACAATTGAATTTAGAAACATTAACATTAAAACAAAACCACCCATCGAG
CTGAATCGTTTGGCGGTAGAAATCGAACGCCCAAAATTCAATATGGGAAA
CATTGTGAACGCAATCGGGGAAATCGGTTTGATGGATTTAGTCTTATCGA
TAGAGACACGTGCAGATAGCTTCACAGTTCATCTCAAAACCTCCGATGCA
AAACGTTTGATTCTACACAAGAACCCGTTGATGTTCATCGATGCCTTTAA
CGGTAAAAGAGAATTTGTGATTGAATTTAGCGGTATACCAGTTGAGTATG
GATCAGTCCGGGTTGCGGAATTTGCAAATTATTTTGGTGATTTTTACAAA
ATTGGTCGTGTGAAAAGTGAAGAAAACGGGCTCTCATTTTGGAATGGTAA
ATGGTCTGTTACTTATTCTAAAATCTGGGTTGAGCTTTCTAAACAAGTTG
TGCTGGATAGTTTGTATGTTGTTAAACTGGTTTTTGATGAAGTTGAAGCA
AAAGAGATGTTTCGTATTTATCAAGAGGAGACCGCACCGGTATCGAGCGA
CACTGAATACGAGTATCTTACGGAATATGAGACAAATGGGATTGTAAGGA
AACGTCGAAATAAGAAACGCGTAAAACGCATTACGAAACATTACGAAAAT
TCATTACTGAAAGGGGTTGATTGTTGTAAGAAAACATTGAGCCCTTTAAC
AAAACAATCCTCGACTAAAATCACAGATGTCAAAAAATCTTAAATGCATG
TGAATGAAAAACAGAGCCAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038202XLOC_038202Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060834-proteinTCONS_00060834-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060834-exon-scaffold_349-1575043694:125221..125296TCONS_00060834-exon-scaffold_349-1575043694:125221..125296Clytia hemisphaericaexon
TCONS_00060834-exon-scaffold_349-1575043694:123758..124629TCONS_00060834-exon-scaffold_349-1575043694:123758..124629Clytia hemisphaericaexon
TCONS_00060834-exon-scaffold_349-1510915933:125221..125296TCONS_00060834-exon-scaffold_349-1510915933:125221..125296Clytia hemisphaericaexon
TCONS_00060834-exon-scaffold_349-1510915933:123758..124629TCONS_00060834-exon-scaffold_349-1510915933:123758..124629Clytia hemisphaericaexon
TCONS_00060834-exon-scaffold_349-1491911889:125221..125296TCONS_00060834-exon-scaffold_349-1491911889:125221..125296Clytia hemisphaericaexon
TCONS_00060834-exon-scaffold_349-1491911889:123758..124629TCONS_00060834-exon-scaffold_349-1491911889:123758..124629Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_349supercontigscaffold_349:123758..125296 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (136.841 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
130.965 136.841 54.7917 49.3508 0.129482 0.358115 0.246886 0.346698 0.161821 0.601324 0.0972766 0.0639458 0.0638569 0 0 0.0877637 0.0360393 0.0369391 0 0 0.510583 0.339606 65.7785 60.703 0 0.0920033 3.62055 4.42598 36.9797 44.2454
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060834 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
100200300400500600700800900Sequence
Match NameE-valueIdentityDescription
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