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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060660 ID=TCONS_00060660|Name=TCONS_00060660|organism=Clytia hemisphaerica|type=transcript|length=1970bpRun BLAST on NCBI transcript from alignment at scaffold_348:514783..555679+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060660 ID=TCONS_00060660|Name=TCONS_00060660|organism=Clytia hemisphaerica|type=transcript|length=40897bp|location=Sequence derived from alignment at scaffold_348:514783..555679+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00060660 vs. Swiss-Prot (Human)
Match: SNX29 (Sorting nexin-29 OS=Homo sapiens GN=SNX29 PE=1 SV=3) HSP 1 Score: 239.58 bits (610), Expect = 6.048e-68 Identity = 144/374 (38.50%), Postives = 214/374 (57.22%), Query Frame = 1
Query: 109 ALALIGNTEN-----DHLFGSSESTTPVQQASSETTSPVENINIAKFIPPIQKVAESTTTDLSTVDLKQAILATAKRKDEVEQQNRALHTSLEEHRELVQTLRNDLEHLETTSKEREENDSKKINDLNREVDVLKNQLKKYVAAVQMLGPVTADDITSASP--------LKAREPRERERANSEHDSIFEEKLVQMAELHGELMEFQENLQRQLASKVIYISKLKHELVALRGPLPDEIHLPEQDNNTENR--PGRPLINIWIPSVFEGGKGTDSHHVYQIYIRIGDDEFNIYKRYSQFNKLHLEMCKKYPKIQEKLNFPKKKVFGKKASKLVEERRKKLQEYLRVLINAELSSNEALSTNPNRNLLISSIPFF 1185
A A +G+ EN DH+ P + S E +SP ++ +P + S ++ +L+QA +A RKDE+E++NR+L L+ E LR +++ L+ E+EE K+ L RE +VLK QLKKYV AVQML + T+ P + E + E A E S +E KL+++AE+HGEL+EF E L R L +K +S+++ EL+ LRGP+P ++ +D + + R LIN+WIPSVF GK ++ HVYQ+YIRI DDE+NIY+RY++F LH ++ KYP+++ NFP KK G K +K VEERRK+LQ YLR ++N + + +P + LI +PFF
Sbjct: 414 ADAPLGSLENGTGPEDHVL-----PDPGLRYSVEASSPGHGSPLSSLLP-----SASVPESMTISELRQATVAMMNRKDELEEENRSLRNLLDGEMEHSAALRQEVDTLKRKVAEQEERQGMKVQALARENEVLKVQLKKYVGAVQML---KREGQTAEVPNLWSVDGEVTVAEQKPGEIAE-ELASSYERKLIEVAEMHGELIEFNERLHRALVAKEALVSQMRQELIDLRGPVPGDLSQTSEDQSLSDFEISNRALINVWIPSVFLRGKAANAFHVYQVYIRIKDDEWNIYRRYTEFRSLHHKLQNKYPQVR-AYNFPPKKAIGNKDAKFVEERRKQLQNYLRSVMNKVIQMVPEFAASPKKETLIQLMPFF 772 The following BLAST results are available for this feature:
BLAST of TCONS_00060660 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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