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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060554 ID=TCONS_00060554|Name=TCONS_00060554|organism=Clytia hemisphaerica|type=transcript|length=2178bpRun BLAST on NCBI protein sequence of TCONS_00060554-protein >TCONS_00060554-protein ID=TCONS_00060554-protein|Name=TCONS_00060554-protein|organism=Clytia hemisphaerica|type=polypeptide|length=475bp MLRVSQRLMAPVKKFDYLVVGGGSGGIASARRATEFCKSDGSKLKVAVIERun BLAST on NCBI transcript from alignment at scaffold_344:306982..318633- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060554 ID=TCONS_00060554|Name=TCONS_00060554|organism=Clytia hemisphaerica|type=transcript|length=11652bp|location=Sequence derived from alignment at scaffold_344:306982..318633- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_344:306982..318633- >TCONS_00060554 ID=TCONS_00060554|Name=TCONS_00060554|organism=Clytia hemisphaerica|type=CDS|length=21420bp|location=Sequence derived from alignment at scaffold_344:306982..318633- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00060554 vs. Swiss-Prot (Human)
Match: GSHR (Glutathione reductase, mitochondrial OS=Homo sapiens GN=GSR PE=1 SV=2) HSP 1 Score: 504.982 bits (1299), Expect = 6.501e-171 Identity = 272/469 (58.00%), Postives = 334/469 (71.22%), Query Frame = 1
Query: 214 VKKFDYLVVXXXXXXXXXXXXXTEFCKSDGSKLKVAVIEEKRLGGTCVNVGCVPKKVMFNTALHAEMLHDMKDYGFDVTYNGFDWSHVKTKRDAYVKRLNGMFATNLDKAEVEHIDGHAKFDSDG--VCHVGDLQLQGEHTMIATGGKPLVPN---VPGAEYGITSDGFFELEKLPKKTVVVGAGYIAVELAAILQTLGSEVHHFIRNDKVLRNFDSLISESITNEHENNVGVKLHKFVDSKSMKITKCDNTGLLSIETLAGPNKETLQ--INDAECLLWAVGRVPNTTDLGLEGLGIKMNEKQEIVVDEFQNTSKPNFYALGDVCGKALLTPVAIAAGRRLSHRLFNNELDSKLNYDNIPTVVFSHPTIGTIGLTEREAREKYGEENIKIYQSKFTNMFYTFAENKPQTVLKLVCQLPTEKVVGLHCMGMGCDEMLQGFSVAVKMGATKKDFDNTVAIHPTSSEEFVT 1599
V +DYLV+GGGSGG+ASARRA E + AV+E +LGGTCVNVGCVPKKVM+NTA+H+E +HD DYGF F+W +K KRDAYV RLN ++ NL K+ +E I GHA F SD V + H +IATGG P P+ +PGA GITSDGFF+LE+LP ++V+VGAGYIAVE+A IL LGS+ IR+DKVLR+FDS+IS + T E EN GV++ KF K +K T +GL A P + + I D +CLLWA+GRVPNT DL L LGI+ ++K I+VDEFQNT+ YA+GDVCGKALLTPVAIAAGR+L+HRLF + DSKL+Y+NIPTVVFSHP IGT+GLTE EA KYG EN+K Y + FT M++ + K + V+K+VC EKVVG+H G+GCDEMLQGF+VAVKMGATK DFDNTVAIHPTSSEE VT
Sbjct: 62 VASYDYLVIGGGSGGLASARRAAEL------GARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHESQIPGASLGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELEN-AGVEVLKFSQVKEVKKTL---SGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTVAIHPTSSEELVT 520 The following BLAST results are available for this feature:
BLAST of TCONS_00060554 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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