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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060496 ID=TCONS_00060496|Name=TCONS_00060496|organism=Clytia hemisphaerica|type=transcript|length=1935bpRun BLAST on NCBI protein sequence of TCONS_00060496-protein >TCONS_00060496-protein ID=TCONS_00060496-protein|Name=TCONS_00060496-protein|organism=Clytia hemisphaerica|type=polypeptide|length=519bp MTELLSLLLLIIYQNCTFAYHIHLLLTKNQVLKLLKSKLQKFMPVLRKPGRun BLAST on NCBI transcript from alignment at scaffold_343:58211..68998- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060496 ID=TCONS_00060496|Name=TCONS_00060496|organism=Clytia hemisphaerica|type=transcript|length=10788bp|location=Sequence derived from alignment at scaffold_343:58211..68998- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_343:58211..68998- >TCONS_00060496 ID=TCONS_00060496|Name=TCONS_00060496|organism=Clytia hemisphaerica|type=CDS|length=12480bp|location=Sequence derived from alignment at scaffold_343:58211..68998- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00060496 vs. Swiss-Prot (Human)
Match: TM39A (Transmembrane protein 39A OS=Homo sapiens GN=TMEM39A PE=2 SV=1) HSP 1 Score: 204.142 bits (518), Expect = 1.477e-57 Identity = 151/452 (33.41%), Postives = 227/452 (50.22%), Query Frame = 1
Query: 481 HTPSPNIPTMNLLQFEITLLTYLTMAMVIQYVNIYKA---------------NFYVMDYYLVMIISXXXXXXXXXXXXKQTLASEVMYSMIYWSKVAGKAXXXXXXXXXXXXXXXXTI-------------QTSALEDVLFLCYPAILYLLTFGFTLNPYSHSVLFKLVPHQSYNMQDLVSN-NTSLFHQAVTLQTNLSTRLKKTETNGLHXXXXXXXXXXXXHISNGGIMEILENPQSYGKEACTMSPDTVRYEAQCLRTDFYLRIKQILFNSLISAYYVGFIPLKFTQNGWLYYDVWWSMQHIFFVWINTFMLLITFLVPHHYINGLHKCAIHLGGWKKYT-GQRDTTP-HIWSPLTTWPRDALVRHNKGLFRAIENQNTATPGDVHHSRFYCIFNSPLRLLNWLTIIQLASVIGQFYVLLWSRLWYQCLSVVLMSPISYYLLFRILRGR 1743
H P++P L FE YL +A+ IQY+NIYK NF+++DY+L I+++ LA +++++I + AG A ++ L+ + T+ ++ ++ ++LFL YP +Y+ F HQ L+++ N + H+AV + L K++ + + E N +C +SPD +R E +CL+ DF RIK++LFNSL SAYYV F+PL F ++ YYD+ WS +H+ VWIN F++L T L+P Y + LHK A HLG W+K G P HIWS T WP+ LVRH++ L+RA+ N A P DV H+RFY +F+ PLRLLN L +I+ + V Q Y LL S W LS+ L+ +YY+LF++LR R
Sbjct: 61 HCQIPDLPVDGSLLFEFLFFIYLLVALFIQYINIYKTVWWYPYNHPASCTSLNFHLIDYHLAAFITVM-------------LARRLVWALISEATKAGAASMIHYMVLISARLVLLTLCGWVLCWTLVNLFRSHSVLNLLFLGYPFGVYVPLCCF---------------HQDSRAHLLLTDYNYVVQHEAVEESASTVGGLAKSKD--------------FLSLLLESLKEQFNNATPIPTHSCPLSPDLIRNEVECLKADFNHRIKEVLFNSLFSAYYVAFLPLCFVKSTQ-YYDMRWSCEHLIMVWINAFVMLTTQLLPSKYCDLLHKSAAHLGKWQKLEHGSYSNAPQHIWSENTIWPQGVLVRHSRCLYRAMGPYNVAVPSDVSHARFYFLFHRPLRLLNLLILIEGSVVFYQLYSLLRSEKWNHTLSMALILFCNYYVLFKLLRDR 469 The following BLAST results are available for this feature:
BLAST of TCONS_00060496 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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