TCONS_00060496-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00060496-protein
Unique Name	TCONS_00060496-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	519

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00060496-protein ID=TCONS_00060496-protein|Name=TCONS_00060496-protein|organism=Clytia hemisphaerica|type=polypeptide|length=519bp
MTELLSLLLLIIYQNCTFAYHIHLLLTKNQVLKLLKSKLQKFMPVLRKPG
SHKSAAFRQTSERNVLNNPYLKFVIPALHHTPSPNIPTMNLLQFEITLLT
YLTMAMVIQYVNIYKANFYVMDYYLVMIISLILLRRVYWLLLKQTLASEV
MYSMIYWSKVAGKALLLLSYFLLITLSIYSTIQTSALEDVLFLCYPAILY
LLTFGFTLNPYSHSVLFKLVPHQSYNMQDLVSNNTSLFHQAVTLQTNLST
RLKKTETNGLHNGKAGKGNTTNGHISNGGIMEILENPQSYGKEACTMSPD
TVRYEAQCLRTDFYLRIKQILFNSLISAYYVGFIPLKFTQNGWLYYDVWW
SMQHIFFVWINTFMLLITFLVPHHYINGLHKCAIHLGGWKKYTGQRDTTP
HIWSPLTTWPRDALVRHNKGLFRAIENQNTATPGDVHHSRFYCIFNSPLR
LLNWLTIIQLASVIGQFYVLLWSRLWYQCLSVVLMSPISYYLLFRILRGR
WAVEATLKEHQTINTGPAG

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_038057	XLOC_038057	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00060496	TCONS_00060496	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019397	Uncharacterised_TMEM39

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019397	Uncharacterised protein family TMEM39	PFAM	PF10271	Tmp39	coord: 74..504 e-value: 2.0E-94 score: 317.0

Blast

[Close]

BLAST of TCONS_00060496-protein vs. Swiss-Prot (Human)
Match: TM39A (Transmembrane protein 39A OS=Homo sapiens GN=TMEM39A PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.312e-67
Identity = 154/450 (34.22%), Postives = 232/450 (51.56%), Query Frame = 0

Query:   69 PYLKFVIPA-LHHTPSPNIPTMNLLQFEITLLTYLTMAMVIQYVNIYKA---------------NFYVMDYYLVMIISLILLRRVYWLLLKQTLASEVMYSMIYWSKVAGKALLLLSYFLLITLSIYSTIQTSALEDVLFLCYPAILYLLTFGFTLNPYSHSVLFKLVPHQSYNMQDLVSNNTSLFHQAVTLQTNLSTRLKKTETNGLHNGKAGKGNTTNGHISNGGIMEILENPQSYGKEACTMSPDTVRYEAQCLRTDFYLRIKQILFNSLISAYYVGFIPLKFTQNGWLYYDVWWSMQHIFFVWINTFMLLITFLVPHHYINGLHKCAIHLGGWKKYT-GQRDTTP-HIWSPLTTWPRDALVRHNKGLFRAIENQNTATPGDVHHSRFYCIFNSPLRLLNWLTIIQLASVIGQFYVLLWSRLWYQCLSVVLMSPISYYLLFRILRGR 500
            P    + P  + H   P++P    L FE     YL +A+ IQY+NIYK                NF+++DY+L   I+++L RR+ W L+ +   +     + Y   ++ + +LL     ++  ++ +  ++ ++ ++LFL YP  +Y+    F  +  +H +L                 N  + H+AV  + + ST        GL   K                     N       +C +SPD +R E +CL+ DF  RIK++LFNSL SAYYV F+PL F ++   YYD+ WS +H+  VWIN F++L T L+P  Y + LHK A HLG W+K   G     P HIWS  T WP+  LVRH++ L+RA+   N A P DV H+RFY +F+ PLRLLN L +I+ + V  Q Y LL S  W   LS+ L+   +YY+LF++LR R
Sbjct:   49 PITALITPGPVRHCQIPDLPVDGSLLFEFLFFIYLLVALFIQYINIYKTVWWYPYNHPASCTSLNFHLIDYHLAAFITVMLARRLVWALISEATKAGAASMIHYMVLISARLVLLTLCGWVLCWTLVNLFRSHSVLNLLFLGYPFGVYVPLCCFHQDSRAHLLL--------------TDYNYVVQHEAV--EESAST------VGGLAKSKDFLSLLLESLKEQ------FNNATPIPTHSCPLSPDLIRNEVECLKADFNHRIKEVLFNSLFSAYYVAFLPLCFVKST-QYYDMRWSCEHLIMVWINAFVMLTTQLLPSKYCDLLHKSAAHLGKWQKLEHGSYSNAPQHIWSENTIWPQGVLVRHSRCLYRAMGPYNVAVPSDVSHARFYFLFHRPLRLLNLLILIEGSVVFYQLYSLLRSEKWNHTLSMALILFCNYYVLFKLLRDR 469

The following BLAST results are available for this feature:

BLAST of TCONS_00060496-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00060496-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TM39A	1.312e-67	34.22	Transmembrane protein 39A OS=Homo sapiens GN=TMEM3...	[more]

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TCONS_00060496-protein (polypeptide) - C. hemisphaerica