TCONS_00060365 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060365
Unique NameTCONS_00060365
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2535

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060365 ID=TCONS_00060365|Name=TCONS_00060365|organism=Clytia hemisphaerica|type=transcript|length=2535bp
AAACTTTGTTCGTCATTTTCGTGTTCATGGAATTGTTTgctgaaatgaaa
gaaaattgtCGAGTGTAGAAAGATAGATGGTTTTTAGTTTTAAGTTTTGC
TACCAGaagtttgaaaaactttttttataggtaacaaaaagttaattttt
gAGCcatgaaaaacaacaaataaaagatgtgaaaaatattttaaaaattc
aaaaatgggGAAGCCAGTATGCGATCGTCACGAGTATCAATATAAATTTG
TTCTAGTGGGTGAATCCGGTGTTGGGAAGACCCGATTATTTGCGGAACTG
ACTGGACGTCCGCATGATATCGGATCACGGTCGACAATCGGTGTGGAATT
CGGATCGAAGTTAATCGAGAAGAAAGCAGTTACTCTCAAAGCTCAGGTAT
GGGATACTACTGGTCAAGAGCGTTTCCGTTCCACCATCCGCCCGTATTAC
CGTGGCGTGTCTGGGGCGTTAGTGACTTATAATACAGCTCAGAAAGAAAC
ATTTGATAATTTAGCCTGGTGGATGGAGGAGTTACGTTCTCATTGCACGA
CTGACATTTTATTCATGCTGGTAGCTCACAAAATTGATCTTAAGCGGCCG
CCAGCCGTAGACCAAGTAGTAGCAAGAGATTTTGCAGACCGGAATAAGAT
GGTATACGTGGAAACGTCACTTATTGATTCGTCAGAGTTTGAGAGTGCGT
TTGAGTTGATGGTCCGCAAAATACACAAGAAGCGTATGAGACAATCGTGT
GTAGGTGAAGTGACTTGCATCAAGTGTTTGAGGAATGCAAGGAAAGTTTC
TTCTGATGAAGAAAGTGGGGAAGAAGAGGAAGAACAGCCGAAAGAAACCA
GCTCTTTTTACGTGTAGAAACCAGGTGGTTCGGTTGTTTCTCATTTGCCT
TGGAAATGGTCCAAGATAAATCATGGAATTCGCTCTTTAAGTTACTTACC
CCTTTACTaagaattttaagattttggacCAATATGAAAACGTCATTGGT
TCCAAGATTCATTGTGAGTGTGGtgtggaaaaaactttttcagtttaGTC
CAATCAACTTGTTCCCGCTTAACACGAGCATTAGAAATCATGAGTTATGG
CGTTTATATTGGTAAACGAAAATGTTGGACTCGCGTTAAATCTAAATACC
ttactgaaaattgttattgaAGACAATTACTAAAAACGAAATTAGAATTA
ATCAGCTTAAATTCGTGATAACGAATTGGGATATTTTCATTCGTGATAAC
GAATTAGGATATTTTCATGAACTTCTTGATATCTTCGTGAACTTCTGGAT
ATTCAGCTTTATGAACAGCCTCCCTTGTTGGCGtttacttttttatgatt
ttgagctATTTTTGAGAGTTAGGTCATAACTAGGATCAATTAGTTTTCTT
TTATCATGGTTATGACCAATTGACAATATCCGAACTAAAAAATTGAGCCC
TCTATCAGTATTATTGTATGATTGGGGAGGTTCTGGGGCTGGCCAATGAA
ACCTTGTGGTAAAAATTACAACAACCTAATTTGTGTTGACAATCATATAT
TTTTACAGTTGATTGgatttatttatattatatCTACTTCAATGTGTCAA
CTTGTGTCAAGTGAATGCTATAAACGGTGATGAAATACCATCTCTTTTCC
TTATGTAAGTAGCTAGAATTACCAACCTATACTTTATTTAAACGACGGGT
TGCCATCATCAATTACTGCCTACCTGTGTCATAACGCGAATAGCTTGAAA
TGTAAGCGGGTGTCTTTACGTCACTTACTTTATGGCAACATTTATGCTGG
CATAAATGAAACATAATATCATTCCAATGGATTCTTTGATTCGATAAAGT
GTTAAAGTCAGGCTTGAATACAAGTTATATCCAATAAAAGTAGAGCATAG
TCTTTATGGGATATTGTGTGCACCTATTTACTCTCGAACCAAAAATTGTA
TCTGGTGAAAATTTTGCGCAGGTTTATTGACGGTAAATACTCGGAGTTGA
TACCTTTTGTAAGGTCAGGTTTGATACGTTAACTACAATACAACAAATCT
TCTCTGTTTATCAGAATAATGTAAATACTACTAAttaaatttgaagaatt
ttccgTTTCATTTCGTACTACTTTAGTATGTAAAGATTTCATTTTACGCc
caaatttctatttttgttaacatttttgctcaattttttatttatttttc
tttttgtaaattatttcaaatttaactCGATTTATTACCATAGCAATGAT
TACTACATTTTAGGGATAAGGAAATGTAGTGGTAATGATACCAGCATATT
TCAAGGATAGTTTATTATTATGCCAATGGGCTTGATAATTTAGGCCACAC
AGGgattataagaaaatatttctaCCAACTTTAACCGCACTTATCGCTTA
TATTAACCCCTCCGAGAGAAAAGATACAAAGCTTCATTTGCTGAAAATGT
TATACTTTTGAGGATGCACTAATTCTTCAAATAAATCGATGTTTGGCTTT
TGTGTTTTTTGAGGGACATTTTCTTGCTGTCAGAA
Run BLAST on NCBI

protein sequence of TCONS_00060365-protein

>TCONS_00060365-protein ID=TCONS_00060365-protein|Name=TCONS_00060365-protein|organism=Clytia hemisphaerica|type=polypeptide|length=220bp
MGKPVCDRHEYQYKFVLVGESGVGKTRLFAELTGRPHDIGSRSTIGVEFG
SKLIEKKAVTLKAQVWDTTGQERFRSTIRPYYRGVSGALVTYNTAQKETF
DNLAWWMEELRSHCTTDILFMLVAHKIDLKRPPAVDQVVARDFADRNKMV
YVETSLIDSSEFESAFELMVRKIHKKRMRQSCVGEVTCIKCLRNARKVSS
DEESGEEEEEQPKETSSFYV
Run BLAST on NCBI

transcript from alignment at scaffold_341:162727..166265+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060365 ID=TCONS_00060365|Name=TCONS_00060365|organism=Clytia hemisphaerica|type=transcript|length=3539bp|location=Sequence derived from alignment at scaffold_341:162727..166265+ (Clytia hemisphaerica)
AAACTTTGTTCGTCATTTTCGTGTTCATGGAATTGTTTgctgaaatgaaa
gaaaattgtCGAGTGTAGAAAGATAGATGGTTTTTAGTTTTAAGTTTTGC
TACCAGaagtttgaaaaactttttttataggtaacaaaaagttaattttt
ggtAAGTTCTTTTCTCTCAATTTTACATATATACAGTAAATACATATAAG
CTCAATCAAGTCTGATTTAGAAAACTTGCGAGACTCACCTGATCGTAGTT
TTcgtaatttttaaaaagtgtacCTTAATTGCTAATTACGATGTATGTTT
AAGTTTGATTAGAGTTTTATAataattgcttttaatgatAATCAATTTCC
TCAAGCAGAAAAAGTAGGAAATCATCATCTCGCATACATGTTACATGTTG
TATTAACGTATATCTAACCgtcatcaaaaactttttttcttcttcttctg
agATCGCATTTTCTGGTAACTGTGGCGAGAGTTCTTTTGGTAGTTATCGT
GTTACATGTTTTTGCTGTTTATTTGACATTTAGATTTTAAATGACTATGA
CTTTTACATTACAATGCTCATTTAAGCCTGATAAAAGAAGAGATTAGTAC
TTATTGCGTTTTATgttattttatatataatgattATAATTAACATGTCA
GCGTTATGAAGGGGTTTACCCCTATTTATGACATGGTCGAGCAGTTTGTG
CCAATGTTGGTTGACATAACCTTTCAACTTGTCTTtacatttgtttttgt
tttttctgtttttatttattatttgttatttattttttttattttttgta
acagTTTATTGGTATATCAGTAATGGAAGTAATAACATCAGAAAATGCTT
AGGTATCAGATGAAGGAAATTAACTTGAATAGCATAATTAAACTGGAAAT
GGTTTGTGATTCATAACTTCATCCAAACTTAGATTCTAACAATGTACAAC
AGCTAAAACTATTGTTCTTCACTTTACAGAGCcatgaaaaacaacaaata
aaagatgtgaaaaatattttaaaaattcaaaaatgggGAAGCCAGTATGC
GATCGTCACGAGTATCAATATAAATTTGTTCTAGTGGGTGAATCCGGTGT
TGGGAAGACCCGATTATTTGCGGAACTGACTGGACGTCCGCATGATATCG
GATCACGGTCGACAATCGGTGTGGAATTCGGATCGAAGTTAATCGAGAAG
AAAGCAGTTACTCTCAAAGCTCAGGTATAAAGCGTATTTGTCTTGAacgt
ttataacaaaaaaaatgttaagacATTTTATTTTAAGGAATTTTTTACCA
GATAAATTTGCGAAAGCGAATACCAACATCACATCATTGAATTCTGGAGT
TCCTCATTACTGTCCAATCACTCaactcttctttttcttcttctcatCAG
GTATGGGATACTACTGGTCAAGAGCGTTTCCGTTCCACCATCCGCCCGTA
TTACCGTGGCGTGTCTGGGGCGTTAGTGACTTATAATACAGCTCAGAAAG
AAACATTTGATAATTTAGCCTGGTGGATGGAGGAGTTACGTTCTCATTGC
ACGACTGACATTTTATTCATGCTGGTAGCTCACAAAATTGATCTTAAGCG
GCCGCCAGCCGTAGACCAAGTAGTAGCAAGAGATTTTGCAGACCGGAATA
AGATGGTATACGTGGAAACGTCACTTATTGATTCGTCAGAGTTTGAGAGT
GCGTTTGAGTTGATGGTCCGCAAAATACACAAGAAGCGTATGAGACAATC
GTGTGTAGGTGAAGTGACTTGCATCAAGTGTTTGAGGAATGCAAGGAAAG
TTTCTTCTGATGAAGAAAGTGGGGAAGAAGAGGAAGAACAGCCGAAAGAA
ACCAGCTCTTTTTACGTGTAGAAACCAGGTGGTTCGGTTGTTTCTCATTT
GCCTTGGAAATGGTCCAAGATAAATCATGGAATTCGCTCTTTAAGTTACT
TACCCCTTTACTaagaattttaagattttggacCAATATGAAAACGTCAT
TGGTTCCAAGATTCATTGTGAGTGTGGtgtggaaaaaactttttcagttt
aGTCCAATCAACTTGTTCCCGCTTAACACGAGCATTAGAAATCATGAGTT
ATGGCGTTTATATTGGTAAACGAAAATGTTGGACTCGCGTTAAATCTAAA
TACCttactgaaaattgttattgaAGACAATTACTAAAAACGAAATTAGA
ATTAATCAGCTTAAATTCGTGATAACGAATTGGGATATTTTCATTCGTGA
TAACGAATTAGGATATTTTCATGAACTTCTTGATATCTTCGTGAACTTCT
GGATATTCAGCTTTATGAACAGCCTCCCTTGTTGGCGtttacttttttat
gattttgagctATTTTTGAGAGTTAGGTCATAACTAGGATCAATTAGTTT
TCTTTTATCATGGTTATGACCAATTGACAATATCCGAACTAAAAAATTGA
GCCCTCTATCAGTATTATTGTATGATTGGGGAGGTTCTGGGGCTGGCCAA
TGAAACCTTGTGGTAAAAATTACAACAACCTAATTTGTGTTGACAATCAT
ATATTTTTACAGTTGATTGgatttatttatattatatCTACTTCAATGTG
TCAACTTGTGTCAAGTGAATGCTATAAACGGTGATGAAATACCATCTCTT
TTCCTTATGTAAGTAGCTAGAATTACCAACCTATACTTTATTTAAACGAC
GGGTTGCCATCATCAATTACTGCCTACCTGTGTCATAACGCGAATAGCTT
GAAATGTAAGCGGGTGTCTTTACGTCACTTACTTTATGGCAACATTTATG
CTGGCATAAATGAAACATAATATCATTCCAATGGATTCTTTGATTCGATA
AAGTGTTAAAGTCAGGCTTGAATACAAGTTATATCCAATAAAAGTAGAGC
ATAGTCTTTATGGGATATTGTGTGCACCTATTTACTCTCGAACCAAAAAT
TGTATCTGGTGAAAATTTTGCGCAGGTTTATTGACGGTAAATACTCGGAG
TTGATACCTTTTGTAAGGTCAGGTTTGATACGTTAACTACAATACAACAA
ATCTTCTCTGTTTATCAGAATAATGTAAATACTACTAAttaaatttgaag
aattttccgTTTCATTTCGTACTACTTTAGTATGTAAAGATTTCATTTTA
CGCccaaatttctatttttgttaacatttttgctcaattttttatttatt
tttctttttgtaaattatttcaaatttaactCGATTTATTACCATAGCAA
TGATTACTACATTTTAGGGATAAGGAAATGTAGTGGTAATGATACCAGCA
TATTTCAAGGATAGTTTATTATTATGCCAATGGGCTTGATAATTTAGGCC
ACACAGGgattataagaaaatatttctaCCAACTTTAACCGCACTTATCG
CTTATATTAACCCCTCCGAGAGAAAAGATACAAAGCTTCATTTGCTGAAA
ATGTTATACTTTTGAGGATGCACTAATTCTTCAAATAAATCGATGTTTGG
CTTTTGTGTTTTTTGAGGGACATTTTCTTGCTGTCAGAA

Coding sequence (CDS) from alignment at scaffold_341:162727..166265+

>TCONS_00060365 ID=TCONS_00060365|Name=TCONS_00060365|organism=Clytia hemisphaerica|type=CDS|length=1326bp|location=Sequence derived from alignment at scaffold_341:162727..166265+ (Clytia hemisphaerica)
atgggGAAGCCAGTATGCGATCGTCACGAGTATCAATATAAATTTGTTCT
AGTGGGTGAATCCGGTGTTGGGAAGACCCGATTATTTGCGGAACTGACTG
GACGTCCGCATGATATCGGATCACGGTCGACAATCGGTGTGGAATTCGGA
TCGAAGTTAATCGAGAAGAAAGCAGTTACTCTCAAAGCTCAGGTATGGGA
TACTACTGGTCAAGAGCGTTTCCGTTCCACCATCCGCCCGTATTACCGTG
GCGTGTCTGGGGCGTTAGTGACTTATAATACAGCTCAGAAAGAAACATTT
GATAATTTAGCCTGGTGGATGGAGGAGTTACGTTCTCATTGCACGACTGA
CATTTTATTCATGCTGGTAGCTCACAAAATTGATCTTAAGCGGCCGCCAG
CCGTAGACCAAGTAGTAGCAAGAGATTTTGCAGACCGGAATAAGATGGTA
TACGTGGAAACGTCACTTATTGATTCGTCAGAGTTTGAGAGTGCGTTTGA
GTTGATGGTCCGCAAAATACACAAGAAGCGTATGAGACAATCGTGTGTAG
GTGAAGTGACTTGCATCAAGTGTTTGAGGAATGCAAGGAAAGTTTCTTCT
GATGAAGAAAGTGGGGAAGAAGAGGAAGAACAGCCGAAAGAAACCAGCTC
TTTTTACGTGTAGatgggGAAGCCAGTATGCGATCGTCACGAGTATCAAT
ATAAATTTGTTCTAGTGGGTGAATCCGGTGTTGGGAAGACCCGATTATTT
GCGGAACTGACTGGACGTCCGCATGATATCGGATCACGGTCGACAATCGG
TGTGGAATTCGGATCGAAGTTAATCGAGAAGAAAGCAGTTACTCTCAAAG
CTCAGGTATGGGATACTACTGGTCAAGAGCGTTTCCGTTCCACCATCCGC
CCGTATTACCGTGGCGTGTCTGGGGCGTTAGTGACTTATAATACAGCTCA
GAAAGAAACATTTGATAATTTAGCCTGGTGGATGGAGGAGTTACGTTCTC
ATTGCACGACTGACATTTTATTCATGCTGGTAGCTCACAAAATTGATCTT
AAGCGGCCGCCAGCCGTAGACCAAGTAGTAGCAAGAGATTTTGCAGACCG
GAATAAGATGGTATACGTGGAAACGTCACTTATTGATTCGTCAGAGTTTG
AGAGTGCGTTTGAGTTGATGGTCCGCAAAATACACAAGAAGCGTATGAGA
CAATCGTGTGTAGGTGAAGTGACTTGCATCAAGTGTTTGAGGAATGCAAG
GAAAGTTTCTTCTGATGAAGAAAGTGGGGAAGAAGAGGAAGAACAGCCGA
AAGAAACCAGCTCTTTTTACGTGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037986XLOC_037986Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060365-proteinTCONS_00060365-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060365-exon-scaffold_341-1491911889:162727..162877TCONS_00060365-exon-scaffold_341-1491911889:162727..162877Clytia hemisphaericaexon
TCONS_00060365-exon-scaffold_341-1510915933:162727..162877TCONS_00060365-exon-scaffold_341-1510915933:162727..162877Clytia hemisphaericaexon
TCONS_00060365-exon-scaffold_341-1575043694:162727..162877TCONS_00060365-exon-scaffold_341-1575043694:162727..162877Clytia hemisphaericaexon
TCONS_00060365-exon-scaffold_341-1491911889:163706..163950TCONS_00060365-exon-scaffold_341-1491911889:163706..163950Clytia hemisphaericaexon
TCONS_00060365-exon-scaffold_341-1510915933:163706..163950TCONS_00060365-exon-scaffold_341-1510915933:163706..163950Clytia hemisphaericaexon
TCONS_00060365-exon-scaffold_341-1575043694:163706..163950TCONS_00060365-exon-scaffold_341-1575043694:163706..163950Clytia hemisphaericaexon
TCONS_00060365-exon-scaffold_341-1491911889:164127..166265TCONS_00060365-exon-scaffold_341-1491911889:164127..166265Clytia hemisphaericaexon
TCONS_00060365-exon-scaffold_341-1510915933:164127..166265TCONS_00060365-exon-scaffold_341-1510915933:164127..166265Clytia hemisphaericaexon
TCONS_00060365-exon-scaffold_341-1575043694:164127..166265TCONS_00060365-exon-scaffold_341-1575043694:164127..166265Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_341supercontigscaffold_341:162727..166265 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
20.6369	20.8679	13.436	11.5061	18.1419	12.8406	15.5701	17.8076	10.7966	14.0421	12.2079	8.67511	16.3523	14.6327	11.216	10.9211	23.2209	23.7537	13.9764	21.1066	26.8251	29.8875	22.735	25.3756	22.206	24.846	11.2729	10.5799	20.7045	18.3867
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
[Close]
BLAST of TCONS_00060365 vs. Swiss-Prot (Human)
Match: RB11A (Ras-related protein Rab-11A OS=Homo sapiens GN=RAB11A PE=1 SV=3)

HSP 1 Score: 161.384 bits (407), Expect = 1.587e-44
Identity = 73/169 (43.20%), Postives = 117/169 (69.23%), Query Frame = 1 
Query:  223 DRHEYQYKFVLVGESGVGKTRLFAELTGRPHDIGSRSTIGVEFGSKLIEKKAVTLKAQVWDTTGQERFRSTIRPYYRGVSGALVTYNTAQKETFDNLAWWMEELRSHCTTDILFMLVAHKIDLKRPPAVDQVVARDFADRNKMVYVETSLIDSSEFESAFELMVRKIHK 729
            D ++Y +K VL+G+SGVGK+ L +  T    ++ S+STIGVEF ++ I+    T+KAQ+WDT GQER+R+    YYRG  GAL+ Y+ A+  T++N+  W++ELR H  ++I+ MLV +K DL+   AV    AR FA++N + ++ETS +DS+  E+AF+ ++ +I++
Sbjct:    6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 174
The following BLAST results are available for this feature:
BLAST of TCONS_00060365 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RB11A1.587e-4443.20Ras-related protein Rab-11A OS=Homo sapiens GN=RAB... [more]
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