TCONS_00060365-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00060365-protein
Unique NameTCONS_00060365-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length220

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060365-protein ID=TCONS_00060365-protein|Name=TCONS_00060365-protein|organism=Clytia hemisphaerica|type=polypeptide|length=220bp
MGKPVCDRHEYQYKFVLVGESGVGKTRLFAELTGRPHDIGSRSTIGVEFG
SKLIEKKAVTLKAQVWDTTGQERFRSTIRPYYRGVSGALVTYNTAQKETF
DNLAWWMEELRSHCTTDILFMLVAHKIDLKRPPAVDQVVARDFADRNKMV
YVETSLIDSSEFESAFELMVRKIHKKRMRQSCVGEVTCIKCLRNARKVSS
DEESGEEEEEQPKETSSFYV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037986XLOC_037986Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060365TCONS_00060365Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 116..129
score: 36.63
coord: 151..173
score: 29.72
coord: 36..52
score: 25.76
coord: 54..76
score: 40.26
coord: 13..34
score: 41.35
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 13..176
e-value: 1.6E-49
score: 180.5
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 18..218
e-value: 0.0044
score: -4.2
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 15..176
e-value: 1.1E-4
score: -57.1
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 10..176
e-value: 5.7E-6
score: -24.0
NoneNo IPR availableGENE3D3.30.70.1390coord: 11..76
e-value: 1.1E-18
score: 66.5
NoneNo IPR availableGENE3D3.40.50.300coord: 77..174
e-value: 3.4E-24
score: 84.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 197..220
NoneNo IPR availablePROSITEPS51419RABcoord: 8..220
score: 23.124
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 11..169
e-value: 3.0E-24
score: 83.6
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 14..174
e-value: 1.1E-38
score: 132.3
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 9..182

Blast
[Close]
BLAST of TCONS_00060365-protein vs. Swiss-Prot (Human)
Match: RB11A (Ras-related protein Rab-11A OS=Homo sapiens GN=RAB11A PE=1 SV=3)

HSP 1 Score: 162.155 bits (409), Expect = 4.066e-50
Identity = 73/169 (43.20%), Postives = 117/169 (69.23%), Query Frame = 0 
Query:    7 DRHEYQYKFVLVGESGVGKTRLFAELTGRPHDIGSRSTIGVEFGSKLIEKKAVTLKAQVWDTTGQERFRSTIRPYYRGVSGALVTYNTAQKETFDNLAWWMEELRSHCTTDILFMLVAHKIDLKRPPAVDQVVARDFADRNKMVYVETSLIDSSEFESAFELMVRKIHK 175
            D ++Y +K VL+G+SGVGK+ L +  T    ++ S+STIGVEF ++ I+    T+KAQ+WDT GQER+R+    YYRG  GAL+ Y+ A+  T++N+  W++ELR H  ++I+ MLV +K DL+   AV    AR FA++N + ++ETS +DS+  E+AF+ ++ +I++
Sbjct:    6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 174
The following BLAST results are available for this feature:
BLAST of TCONS_00060365-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RB11A4.066e-5043.20Ras-related protein Rab-11A OS=Homo sapiens GN=RAB... [more]
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