TCONS_00060261 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060261
Unique NameTCONS_00060261
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1754

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060261 ID=TCONS_00060261|Name=TCONS_00060261|organism=Clytia hemisphaerica|type=transcript|length=1754bp
CTCTCTGGATGGTGAAGAGTATCCTGCTTTTCATCAAGGGGTCTGGGCAG
GAATTTGGTGGGCCTTTGTTTCCATGACTACAGTTGGATACGGCGATATA
TGTCCAAAGACGAAACCTGGTCGTATATTCAGCATTGTATGGGTGATCAC
AGGAGTTGCAAGCTGTGCATTATTCACGTCCTACATGACGACGGTTTTGA
CGTCCATTTGTATGACGGAAGACGTGTCTCTGACGGCAACCAAgGTTGGC
GTCCTAACTGAAAGCGAAGAACATCGGTTTGCCATGAAACGAAATTCAAT
GCCTCAAGCATTTCCAACGATAAATGAAGTCATAGATGCTTTAAAACGCC
GTGAAGTTCGTGGTATCTTAATCGATAGTTACATAGCAGCCGAATATGAA
GAACAACTGAAATCGTTCAAGAGACAAATGGTCATTGAATATATCACAAG
TTATGGTGTGGTGTTTTTAAACGAAGGTGTTCGCTTCTCAGATTGTGTGC
GAGATTATGTGTTTTCAAGACAGAATGAAATATCAGAGATTATACGACAG
AACGTACAATTATTAGAGGTTTCCACGACGAGTGCTGCAGCAGAGAAATC
GAACAATTTGATTGATGTTAAGAGTCCTTCATTTTTCTATATCGTAACTG
GTGTGATTGGAATATTAGTGGTGGCAGCTTTCTTTGGCACGATATGGGAT
ATTAGAAAAAGACAAATGGAAAAACtgaagAAGTACAACCCCCACGAAGA
TATTTCTCTGTCCGAATGGCGTGCACGTTATAAATGTGACTTTCAACAGG
TGTTGGAAGACATGCAAGGGGAATGTACAAGCATAAGTGATAAATGTACT
TCTATACTTAAACAACTTCAAAGTAGTAATGGGATTGTATGTTTACGGAA
AAAACGTTCGGATGATATGAGGATTGAGTATGACTACTAGTCCAAACACA
ACGTTGTGCCTAGCGCCCAGTGACGTCGAATCGACAGTTAGGAGACGGTA
GAATGTCTGTAAGGAATGAAAccacgttcacacgctacggttccgtttca
tttcgaaacaaaatgaagccattctattggtgaattcaagttttacgtca
tttctaaccaatagaatggcttcacttcgtttcggagcgaaacgggaCCG
TTACCTGCGAACATGGTCTGAGTTTGCGTATCATTCCTTGAGAAATCAAT
TCATGGTATTCATTTCGTAATGATTTCTATGGAAAcaaccggtttttgcc
agtaatgGCAAACTTTTAACAACTTTTCTCGAAGAAGTGAAGACGTCAAC
GATATTGTACCTCTCGGATACAACCGTCAGCTATTGATTTTTACAATAGA
GAAATACCGATGTTGGTTTATTCTCGATTAACCATCAACCACGTTCCTTG
AGGTGGAAATTTGGTCAGCATTTTAAGCAagaaattttatggagaatcga
ccataaaaatgtttttctaaaatatgtGTTAGTATACCAATGTAAGTTTT
TTAAGAATTGTATTAAATAGCTCGGACATCCTTTTGGATTTGTCCATTAA
ACAATTACATGCGAAATGGGAGGTTTTAAGATAGCATATAAATAATATTA
ATCTGCTGGCTCATAGCCCAAAACTACATGAATGGATCAGGCTCTCCATA
AAAATGGTACCGTGTCCAGTTTTAGAGCTGATTAGTCCGCCTTCTTGTTT
CAATTCTGGTCGCACACAGCCCGATTTAAATGTTTAGAAATTCGAGCGTT
CGAA
Run BLAST on NCBI

transcript from alignment at scaffold_339:111208..116295-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060261 ID=TCONS_00060261|Name=TCONS_00060261|organism=Clytia hemisphaerica|type=transcript|length=5088bp|location=Sequence derived from alignment at scaffold_339:111208..116295- (Clytia hemisphaerica)
CTCTCTGGATGGTGAAGAGTATCCTGCTTTTCATCAAGGGGTCTGGGCAG
GAATTTGGTGGGCCTTTGTTTCCATGACTACAGTTGGGTGAGTTAATTAA
GTTACATTCTTGAGTTATAGTTTTTTAGTAGAAGTGTGGAGTCTTTTCAC
CTTTTCACCACAAGATAATTTCTGACTTATACTTTTGTTTTTACAAAAGT
AAATATTCCACAGATTGAACTTTAACTTAAAACATATTTTCTAGTTCTTG
TAATCAATAATTTAGTTGAAATTGGCGTTGGAGTTGGTTCTGGCGGAACC
AGCACTTTAAAATAGCAATCAAATAAAGCTTCCATATTTTCGGAAAAAAG
TAGGGGGAGGGGTATTTAATCGAATTTGAAAATCCAAAATGCATTTTGAG
ACTAAAACCCACATCAAAGAATGAAAGACTTGAGACCTGAAACTTTCATT
TCTAGATACGGCGATATATGTCCAAAGACGAAACCTGGTCGTATATTCAG
CATTGTATGGGTGATCACAGGAGTTGCAAGCTGTGCATTATTCACGTCCT
ACATGACGACGGTTTTGACGTCCATTTGTATGACGGAAGACGTGTCTCTG
ACGGCAACCAAGGTAAAAACAACAAATAACACTCCATTCACACACTAAAA
ATTTGTTTTTATTCGAACTCTTGAGCATTGATTTCCTTTGAGCTGTTTGG
TCAACCTTTTTGTAAAAAAGTTTCTTTATAATTGTTGAATGATGGCCGAT
TGGTTTGAAGTGCCGACTGTTCCTTTCAGTCTAAGGAAAGCACAAAAGAT
TCACAAAGGATATTGGGAAAACAACCAAAAGTCGGCGAGTCCAAGAATAC
TGCACTATTCACGGCAAAATATCGATTGCATCAGACAGCTTTAGAGAGTA
AATAGAAAAAAGTGGTTATATAAGGTTCAGAAAGAGGTGTCTGTTATGAA
GGAACGCCCTCTTTAAACCTTTTGAATCTCCTTTCCCAATTTCTTTTAGG
TTGGCGTCCTAACTGAAAGCGAAGAACATCGGTTTGCCATGAAACGAAAT
TCAATGCCTCAAGGTAAATCCTTCCTTATTTCCTGAAAGAGCCAAAGGCG
TTCAAAAGAGTTCAATGATAGTAACAATATATAGGTCATTTAAAGATTTT
GAGAGTTTTAAAAGGATTTCTGAGTTTTCTAAACCAAGCTACAATGGTGG
AACAAAGGTTTGTAAAACTTTTAAAAAAATCCCTAAAAGTGTCAATCTTT
TTCACACTTGGGGAAATTCATTGGCAGAAAATATCAATATGCTTGCCAGG
AGTCCTTATGACTTCAGTCCGTATGATTTTTGGACTTCCAAGACTTCCAA
GGACTGAAAATGGGTGAACCTCGGCCACACAGATTGTAGGTGCACCAGAG
AGCTCTGAAAAGTTGTTTTTCATGAAGGAACCTCCTCAAATATGGTCTAG
TTAGTTGTTTTCTCGAAGGAGATGAAGAGGAAAACTCGTCGAGTCTTCAA
TCTCAGACCAAAAAAGGCCTGAAGGTGACGACATTCATTTCCTTCAATAT
TGTGTGGATCAAAAAAACATCATTGGCTTTATTTCATGGATTTTTGAAAA
GTCTACAATCTTTTGCCCATGGTTGTAGCTATGAAAGTTGCACCGTCTTT
TAACCTCTGTTGGGCAAATCAATATATTTGTAGCATTTCCAACGATAAAT
GAAGTCATAGATGCTTTAAAACGCCGTGAAGTTCGTGGTATCTTAATCGA
TAGTTACATAGCAGCCGAATATGAAGAACAACTGAAATCGTTCAAGAGAC
AAATGGTCATTGAATATATCACAAGTTATGGTGTGGTGTTTTTAAACGAA
GGTGTTCGCTTCTCAGATTGTGTGCGAGATTATGTGTTTTCAAGACAGAA
TGAAATATCAGAGATTATACGACAGAACGTACAATTATTAGAGGTATGTA
GGTTCTCTTCCTTCCATGGGTTATTGCGATAAAAGTACTAATCTTGCCAC
AGATACATGACTTGTGGCTCAACTTTCAGGAGGCAAAAAGATTAGAACAG
GGTCAGAGGCGTCTAATGTTCACAAAGTTCATAGTTACTGTGCTGGTATA
ATATCAGGGTTGGTCAAAGCAAAATTTTTAGAAAATGAGCTAGAATGTTA
AGCAACCTCAGGTCTGACCCGAAAACTCTTCGAGCATCTTCCTATTTTTT
ACTAGGGGAAGCATCTTGGGGGTCAAAGAATATGGCTTAATTGTTTTATT
CTTGGATAATGATAATGATTCATTGGGATCACGTCGAAATTTCACCGAAG
AAAAATGTTGTGCTATAATTCTTTTATTAGGTTTCCACGACGAGTGCTGC
AGCAGAGAAATCGAACAATTTGATTGATGTTAAGAGTCCTTCATTTTTCT
ATATCGTAACTGGTGTGATTGGAATATTAGTGGTGGCAGCTTTCTTTGGC
ACGATATGGGATATTAGAAAAAGACAAATGGAAAAACGTGAGTATTGTAC
AAATGAAGTAAAAGCCCGAATGGTTAGAAGCGAATCTTTAACCTTTCTTA
GCCAAGCAAAAGCGAAGCCTTAGAATATACGCCGTATTTTTGACTATGGA
TTAAATTTAGCGGTTTCTTTGTTTTCGAGTGGTATATTTTTTGAAATCTG
GCGAAAAAGTTTACTTTCAATCTGAAATTTGTACAAAAACCACGCGGGCC
GCTCAAGGATTTGGGGATTTAGCGGCTTCAAATCCTACGTAGGAGGGATT
TATGCAATGAATACAGATAAAAGTTATCAAAGAGCTAAAAAAAAACATAC
GTCAAAGAACTTCGGGGTATAATTTTTTCTCTGTAACAGTGCGATCAACG
GAATCAATCCGGTACAGCTATTAGGGTGTTTGGAACTGTTTTAAGATTAG
TTGTTGCAAGTAGAAATGAATGAAATGTAATTAAGAAGAGAAAATTACAT
TAATTGGTTGTGGACAATTAACCAGTTAATATCTAAGAATATCTATGAAA
ATTATCCCATTCTCACATAACCTTCGATAGCTCAGTTGGTAGAGCGGAGG
ACTGTAGATGTGAATGAGCAGATATCCTTAGGTCGCTGGTTCAAATCCGG
CTCGAAGGACTAATTTTCTATGATTTTTTTTTCTAACGAGATTTCTTTTT
CACTTGGTGTATATCAGATTCTTTCATATTGGAAGTTTATCGTGGCTTGG
ATCACGAGATTTACGTTTGGCTACGTTTCGAGAGATTCTTCTCCCATCAT
CGGATCCTTTCATCTTTTTAATAAAGAGTCAAATACAGAATTTAAGAACC
TTTTATGATGGTAATACAGCAGCAAATTTTCTTAAACCTAACTAAAAAGA
AATACAAAAAGGCCACTCACAACATCTTTTGACTCTCCGTTCGAATCTGG
TGGTACGTTTTTAGATAGAAAGCATTGATATTTAACGTGGAACAATGAGA
ACTGGTGACTGCTATTTTCAGCAATCTTTAGCTGTAGCTATTTTTGATTT
GTCAAAAACAGTTCCAATGACAACACGAGTGATCTATCCCACTTTTCCGG
CCTAACCAACCTGGTCGACTCTAAGTGACGACACCACATCGATTGCTTCA
ATTGATCTTTAAAGATGACATCGTGGAGATCGAATTAAGCTTGACAAACA
ATTCAGATTACAGGAAGCTTGGCCGAGCAAATAGAAATATTGATAACGGC
TCTCGACTTCGAAAATACAAAAAACAACAGAAATTTGAACACTGAGTTTC
TGCTGGTTTTAATACACGTTTTTTTTATAAGAACAAACTATATAAGAACA
TAAGGCTTCGCTGGCCAAAATGTTAAGAACAAGTTAAGAAGATTTAAGAC
TTTGTGGACTGAAAAACACCCTATTTCTTAGGAAAATGGTCAAAAATATT
CAAAAAAATGGTCAAAGTAAGAACATGTTAAGAACATTATTAGGCTTAAA
ACTCAAAAAGTTATTGAGAACATCCAAAGGCTTCAAAAATTTTGGATGCT
CTTATAAAAAAATGTGTACTGGCTTTGATAATTGGTATTCTCCTTTTTTT
CATTTTCAGTGAAGAAGTACAACCCCCACGAAGATATTTCTCTGTCCGAA
TGGCGTGCACGTTATAAATGTGACTTTCAACAGGTGTTGGAAGACATGCA
AGGGGAATGTACAAGCATAAGTGATAAATGTACTTCTATACTTAAACAAC
TTCAAAGTAGTAATGGGATTGTATGTTTACGGAAAAAACGTTCGGATGAT
ATGAGGATTGAGTATGACTACTAGTCCAAACACAACGTTGTGCCTAGCGC
CCAGTGACGTCGAATCGACAGTTAGGAGACGGTAGAATGTCTGTAAGGAA
TGAAACCACGTTCACACGCTACGGTTCCGTTTCATTTCGAAACAAAATGA
AGCCATTCTATTGGTGAATTCAAGTTTTACGTCATTTCTAACCAATAGAA
TGGCTTCACTTCGTTTCGGAGCGAAACGGGACCGTTACCTGCGAACATGG
TCTGAGTTTGCGTATCATTCCTTGAGAAATCAATTCATGGTATTCATTTC
GTAATGATTTCTATGGAAACAACCGGTTTTTGCCAGTAATGGCAAACTTT
TAACAACTTTTCTCGAAGAAGTGAAGACGTCAACGATATTGTACCTCTCG
GATACAACCGTCAGCTATTGATTTTTACAATAGAGAAATACCGATGTTGG
TTTATTCTCGATTAACCATCAACCACGTTCCTTGAGGTGGAAATTTGGTC
AGCATTTTAAGCAAGAAATTTTATGGAGAATCGACCATAAAAATGTTTTT
CTAAAATATGTGTTAGTATACCAATGTAAGTTTTTTAAGAATTGTATTAA
ATAGCTCGGACATCCTTTTGGATTTGTCCATTAAACAATTACATGCGAAA
TGGGAGGTTTTAAGATAGCATATAAATAATATTAATCTGCTGGCTCATAG
CCCAAAACTACATGAATGGATCAGGCTCTCCATAAAAATGGTACCGTGTC
CAGTTTTAGAGCTGATTAGTCCGCCTTCTTGTTTCAATTCTGGTCGCACA
CAGCCCGATTTAAATGTTTAGAAATTCGAGCGTTCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037905XLOC_037905Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060261-exon-scaffold_339-1575043694:116209..116295TCONS_00060261-exon-scaffold_339-1575043694:116209..116295Clytia hemisphaericaexon
TCONS_00060261-exon-scaffold_339-1575043694:115684..115840TCONS_00060261-exon-scaffold_339-1575043694:115684..115840Clytia hemisphaericaexon
TCONS_00060261-exon-scaffold_339-1575043694:115233..115296TCONS_00060261-exon-scaffold_339-1575043694:115233..115296Clytia hemisphaericaexon
TCONS_00060261-exon-scaffold_339-1575043694:114353..114612TCONS_00060261-exon-scaffold_339-1575043694:114353..114612Clytia hemisphaericaexon
TCONS_00060261-exon-scaffold_339-1575043694:113809..113965TCONS_00060261-exon-scaffold_339-1575043694:113809..113965Clytia hemisphaericaexon
TCONS_00060261-exon-scaffold_339-1575043694:111208..112236TCONS_00060261-exon-scaffold_339-1575043694:111208..112236Clytia hemisphaericaexon
TCONS_00060261-exon-scaffold_339-1510915933:116209..116295TCONS_00060261-exon-scaffold_339-1510915933:116209..116295Clytia hemisphaericaexon
TCONS_00060261-exon-scaffold_339-1510915933:115684..115840TCONS_00060261-exon-scaffold_339-1510915933:115684..115840Clytia hemisphaericaexon
TCONS_00060261-exon-scaffold_339-1510915933:115233..115296TCONS_00060261-exon-scaffold_339-1510915933:115233..115296Clytia hemisphaericaexon
TCONS_00060261-exon-scaffold_339-1510915933:114353..114612TCONS_00060261-exon-scaffold_339-1510915933:114353..114612Clytia hemisphaericaexon
TCONS_00060261-exon-scaffold_339-1510915933:113809..113965TCONS_00060261-exon-scaffold_339-1510915933:113809..113965Clytia hemisphaericaexon
TCONS_00060261-exon-scaffold_339-1510915933:111208..112236TCONS_00060261-exon-scaffold_339-1510915933:111208..112236Clytia hemisphaericaexon
TCONS_00060261-exon-scaffold_339-1491911889:116209..116295TCONS_00060261-exon-scaffold_339-1491911889:116209..116295Clytia hemisphaericaexon
TCONS_00060261-exon-scaffold_339-1491911889:115684..115840TCONS_00060261-exon-scaffold_339-1491911889:115684..115840Clytia hemisphaericaexon
TCONS_00060261-exon-scaffold_339-1491911889:115233..115296TCONS_00060261-exon-scaffold_339-1491911889:115233..115296Clytia hemisphaericaexon
TCONS_00060261-exon-scaffold_339-1491911889:114353..114612TCONS_00060261-exon-scaffold_339-1491911889:114353..114612Clytia hemisphaericaexon
TCONS_00060261-exon-scaffold_339-1491911889:113809..113965TCONS_00060261-exon-scaffold_339-1491911889:113809..113965Clytia hemisphaericaexon
TCONS_00060261-exon-scaffold_339-1491911889:111208..112236TCONS_00060261-exon-scaffold_339-1491911889:111208..112236Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_339supercontigscaffold_339:111208..116295 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.160738	0.0854958	0.553152	0.784633	0.0309655	0.0489396	2.31395	2.82578	1.83493	1.73229	1.50552	1.56674	0.580272	0.430749	0.327604	0.408381	0.633255	0.492963	1.27751	0.110044	0.000265022	0.382824	1.10662	1.27568	1.15006	0.74875	0.279063	0.347186	0.0254867	0.0299674
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060261 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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