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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060231 ID=TCONS_00060231|Name=TCONS_00060231|organism=Clytia hemisphaerica|type=transcript|length=5388bpRun BLAST on NCBI protein sequence of TCONS_00060231-protein >TCONS_00060231-protein ID=TCONS_00060231-protein|Name=TCONS_00060231-protein|organism=Clytia hemisphaerica|type=polypeptide|length=476bp MALFEVAVKQVAKSSGSATLHPVPDLNSANHFKNLCLVKRKTSLWFWKKPRun BLAST on NCBI transcript from alignment at scaffold_339:46043..56978+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060231 ID=TCONS_00060231|Name=TCONS_00060231|organism=Clytia hemisphaerica|type=transcript|length=10936bp|location=Sequence derived from alignment at scaffold_339:46043..56978+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_339:46043..56978+ >TCONS_00060231 ID=TCONS_00060231|Name=TCONS_00060231|organism=Clytia hemisphaerica|type=CDS|length=12879bp|location=Sequence derived from alignment at scaffold_339:46043..56978+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00060231 vs. Swiss-Prot (Human)
Match: AK1A1 (Alcohol dehydrogenase [NADP(+)] OS=Homo sapiens GN=AKR1A1 PE=1 SV=3) HSP 1 Score: 173.711 bits (439), Expect = 1.474e-46 Identity = 94/273 (34.43%), Postives = 146/273 (53.48%), Query Frame = 1
Query: 1816 KLPLFGIGCYKIQENEADKVISTAIKAGYRLFDIAKSYGNESFIGRAIQ-----NLSVPRDKFFISTKLVTEDHGYKQTRTALMESLEKLQLDYVDLYLIHSP-------------SGGKI-------METWKAFQELKNDGYCREIGVSNFNTHHLDCLLSSGEPTLPDINQIEYHPWNQNRKIVEYCKMLDISVMGYCPLAR-----------MQLTDPIIDTFAKKYNKTFAQILLRWSIQSKVVTIPKSSAPSRIIENSQIFDFCLTEE 2526
K+PL G+G +K + + + A+ GYR D A YGNE IG A++ +VPR++ F+++KL H + AL ++L LQL+Y+DLYL+H P + G I ETWKA + L G + +G+SNFN+ +D +LS P + Q+E HP+ +++ +C+ + V Y PL + L +P++ A+KY ++ AQILLRW +Q KV+ IPKS PSRI++N ++FDF + E
Sbjct: 13 KMPLIGLGTWKSEPGQVKAAVKYALSVGYRHIDCAAIYGNEPEIGEALKEDVGPGKAVPREELFVTSKLWNTKHHPEDVEPALRKTLADLQLEYLDLYLMHWPYAFERGDNPFPKNADGTICYDSTHYKETWKALEALVAKGLVQALGLSNFNSRQIDDILSVAS-VRPAVLQVECHPYLAQNELIAHCQARGLEVTAYSPLGSSDRAWRDPDEPVLLEEPVVLALAEKYGRSPAQILLRWQVQRKVICIPKSITPSRILQNIKVFDFTFSPE 284 The following BLAST results are available for this feature:
BLAST of TCONS_00060231 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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