TCONS_00060180 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060180
Unique NameTCONS_00060180
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1067

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060180 ID=TCONS_00060180|Name=TCONS_00060180|organism=Clytia hemisphaerica|type=transcript|length=1067bp
TTAGTGTACTTTCCAACAGCGGCATGTCTAATAGCTGTCAATTACACTGG
ATGCGATAATACATCTCTTTCCGTGGCTCTAATGGTCATGTCGTTGTGCT
TTCTAGCGCTCAATCAAGgggcAGTCACCGTGAACCAAATGGATATCTCA
CCAAGGTATTGCAGTATATTGGTCGGTATGACGAACACTTCGGCTTCATT
AGCTGGTTGTCTTTCTCCATGGGTCATTGGCTATTTCACCAATGGTAATC
CCACACGAGAACAGTATCGAAAAGTGTTTTTCTGTGCAGCGAGTGTGGCC
ACAGCTGGcggtttattttgtatcatttttaTGAGTGGGAAAGTGCAACC
ATGGAATGATATGAACGAAGAGAAAGAGGGTGAAAGTCCTTCTGGGAATA
CTGCTTGTGGAAAAAGTATCAATGTTTCCGATGAATGTGATGGTTATGAC
GAGACTGAACATTTAGTTCGTTCTTAGATTAGGCTATTCTAGAAATAACT
TGTACTCCGTAAGTTGAGGAGGTCCTTTTTGGGAAAGATGATCCCCCtgg
atatttttcaatttttcaggaccctcttggatttttttcGACCCCGTTTT
ACTGACCGacctggattttcaacctcattttaCTCCTCACCCTTGATTTT
CCTTCTCATTTTACTGAGCATTTTGCACTCAAAAagccagaccaccctgg
attttttattttccagactaccttggacgtcacacctccttaATATAGGG
AGTAAGGGGTAGACTATTTCTTAGTGATGGGTATAAGTCACGGAGACTTT
AAAACCCTGGACACATATTTTTCTGATCTGTTTAGGGGTTAAGATTCCTT
TGCAATTCCGAATCAGTAATTTACTTCCTTCGATTTGTAGAGTATATTTT
TGTAGACTCTAGTTTGGTAGCANATTTGCTATTCCAAATCAGTAATTTAC
TTCCTTCGTTTTGTAGAACATTTTTGTAGATTTTAGTTTGGTAGCTTATA
GATAAATGTGTAGATAGGTAGAttttatatttaattttatATAAACGCAT
TAGATTTTTATATTGGG
Run BLAST on NCBI

protein sequence of TCONS_00060180-protein

>TCONS_00060180-protein ID=TCONS_00060180-protein|Name=TCONS_00060180-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
LVYFPTAACLIAVNYTGCDNTSLSVALMVMSLCFLALNQGAVTVNQMDIS
PRYCSILVGMTNTSASLAGCLSPWVIGYFTNGNPTREQYRKVFFCAASVA
TAGGLFCIIFMSGKVQPWNDMNEEKEGESPSGNTACGKSINVSDECDGYD
ETEHLVRS
Run BLAST on NCBI

transcript from alignment at scaffold_336:183922..186999-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060180 ID=TCONS_00060180|Name=TCONS_00060180|organism=Clytia hemisphaerica|type=transcript|length=3078bp|location=Sequence derived from alignment at scaffold_336:183922..186999- (Clytia hemisphaerica)
TTAGTGTACTTTCCAACAGCGGCATGTCTAATAGCTGTCAATTACACTGG
ATGCGATAATACATCTCTTTCCGTGGCTCTAATGGTCATGTCGTTGTGCT
TTCTAGCGCTCAATCAAGGTGAACTATTTCATGATTTACATTTTCATTGT
CTTGATGTATGGAAAGTGAGCTTTTCCAGAAATTGTCCGTACCCCCTGTT
GAGGATGCATTTTGTCCTGCACCCTCTGGATATTCTCNTCTTGGTCTACC
TGCATATTTTGAACAAGTCTTGGATTTTAAGATTGAGAATGTGAGTATTC
TGTTAATAAATTTTTGTTTTTACATAAGTGGGGAACATATCAAGACACAT
ATTTCATAGCAGGGTAGTGTCTGCCTATTCTTATATTATGTTCATATAAA
CAAAAAATGTTTTCTTGCTCCACATCCTTGTTTAATCAATCAAATTAATT
AAATTCCGAATGGCTCATAAATCTAAATTTGGCGGGATAAAATTTTGGCG
AATTTGACGAATTTTTGAGGCTATTCGCCAAATTCGCTAAAATTTCTTCC
CGCCAAAATTTCTTCTCTTAAGGTAGTCTCATTATTTCCTTTTTAAGGAT
GGTCTCCTGTCGGCTTTACCGTATCTTGGCTCATGTATTGTCTACTTGGC
TATCGGATTTATATCGGATTACATAAGAAAACATCATCTGTCAACGACTT
ATACTAGAAAACTCATCGCCTGCTTTGGTAAACTATTTTTTTCTATTTTT
CCATAGAAGAATCAGTTATTCTACAACCTTCCATGAGATTTTAATTTTTT
GACCGATATCGACCGAAATTTGCAATTTGGTTAAAAATTAAAAAAACGCG
ACCGTAGTGCAGTGGTAGAGCATCTGGCCACGGTGCGCAAGGCCATGGGC
TCAATCCTCGGCCGGTCCATGACCAAAGACTTCCTATTTAATACAAAAAT
GGTGGTAAGAAACAAGTTCGAATTATAGAAAGATTCGAATAATAGAAGTT
CGAATAAACGAGAGTCTACTGTATCATTCAGTGGTCTTATTTAGACCCGG
CGAATAGCAAATTTTGCCGGTCAAAGGGACGAAAAAGATAACTATTCGCC
GGTTCAAAAATAANATGACGTAATCTTTTCTTCAGGCAAAAAAGGTTGTG
CGAAAGTGGAGACCGGCCTTAAGAGCTCATAAAAAGTTTACACGAGGACT
CGTTAAGGCAGCCCAACGACCAAAAGTTGGGATATTTCAAGGTCAAGGAA
TTATTATTTTTTCATTTTTAGGGGCAGTCACCGTGAACCAAATGGATATC
TCACCAAGGTTAACACATTCGCGTAGTTCCTTTAGAGGACAGTGTTTTTG
TTTGAATGATATTACTTACTAGATTAAGTTTGGTCTAATATTGACATCCC
TCATCTAATTTCAACACCCTTCATTAGAGATACCAATAAAGGGAAGGTCG
GAATCGCTGATTGAAACTATATTTCTTTACCAAAAGGTCAGTTAGGAAAA
ATCGATTGTCTATCATTGATTCTGACCTTCTTTATTCCTATCTCTAAAGA
GGGGTGTTGGAATTAGATGAGCGATGTCGACATTTGACCAACTTACGTTA
GTTGAAATTTAAAAGAATTCGAAACTTTGCTTCTTACTTGAGATTACAGG
GTGATGGCCTGTAGAAAAAAATAGAAGGGTTTTATGACTAAGTATGCTCT
AAATAATGTGGAAGCCGTTTATTTTTTGGTTTTAGAGAGTAAAGACAAAC
GTTTTGGTTAAATTAATTCAATGATTTTTCAGTCAAAATGCACTTTTGAA
AACGTTCAAAACGATAAAAATTATATTTCCCTAACCCCTTTCCCTAATAA
TCTTCCATTATACTAACTAGGTATTGCAGTATATTGGTCGGTATGACGAA
CACTTCGGCTTCATTAGCTGGTTGTCTTTCTCCATGGGTCATTGGCTATT
TCACCAATGGTAATGTAAGTCTCTATATGGTATAATAACTTGGGGGAGGG
GTTTCAAGGTGCTGGTATTCCGGTATTACAACTTGTTTCTATTCTAGTAA
AGCGTGAGAAAATTACCGGTCGCTACGCCTTGACAGCCACTTGGGGTGCC
ACTTACGGCTTTTTGATGAACTGGATGGCGTTGATGTGATTCTGTGACTT
CTTTTTCTTTGCCTGAGCACTAGATCTAGTCCCTTTTTGAAAAAAAACTA
TGACCAATTGATTAATTTCTCATATTTTGGAAGCCACTTTCTTTATCATT
CATTTTTCAGCCCACACGAGAACAGTATCGAAAAGTGTTTTTCTGTGCAG
CGAGTGTGGCCACAGCTGGCGGTTTATTTTGTATCATTTTTATGAGTGGG
AAAGTGCAACCATGGAATGATATGAACGAAGAGAAAGAGGGTGAAAGTCC
TTCTGGGAATACTGCTTGTGGAAAAAGTATCAATGTTTCCGATGAATGTG
ATGGTTATGACGAGACTGAACATTTAGTTCGTTCTTAGATTAGGCTATTC
TAGAAATAACTTGTACTCCGTAAGTTGAGGAGGTCCTTTTTGGGAAAGAT
GATCCCCCTGGATATTTTTCAATTTTTCAGGACCCTCTTGGATTTTTTTC
GACCCCGTTTTACTGACCGACCTGGATTTTCAACCTCATTTTACTCCTCA
CCCTTGATTTTCCTTCTCATTTTACTGAGCATTTTGCACTCAAAAAGCCA
GACCACCCTGGATTTTTTATTTTCCAGACTACCTTGGACGTCACACCTCC
TTAATATAGGGAGTAAGGGGTAGACTATTTCTTAGTGATGGGTATAAGTC
ACGGAGACTTTAAAACCCTGGACACATATTTTTCTGATCTGTTTAGGGGT
TAAGATTCCTTTGCAATTCCGAATCAGTAATTTACTTCCTTCGATTTGTA
GAGTATATTTTTGTAGACTCTAGTTTGGTAGCANATTTGCTATTCCAAAT
CAGTAATTTACTTCCTTCGTTTTGTAGAACATTTTTGTAGATTTTAGTTT
GGTAGCTTATAGATAAATGTGTAGATAGGTAGATTTTATATTTAATTTTA
TATAAACGCATTAGATTTTTATATTGGG

Coding sequence (CDS) from alignment at scaffold_336:183922..186999-

>TCONS_00060180 ID=TCONS_00060180|Name=TCONS_00060180|organism=Clytia hemisphaerica|type=CDS|length=1908bp|location=Sequence derived from alignment at scaffold_336:183922..186999- (Clytia hemisphaerica)
CCCACACGAGAACAGTATCGAAAAGTGTTTTTCTGTGCAGCGAGTGTGGC
CACAGCTGGCGGTTTATTTTGTATCATTTTTATGAGTGGGAAAGTGCAAC
CATGGAATGATATGAACGAAGAGAAAGAGGGTGAAAGTCCTTCTGGGAAT
ACTGCTTGTGGAAAAAGTATCAATGTTTCCGATGAATGTGATGGTTATGA
CGAGACTGAACATTTAGTTCGTTCTTAGGTATTGCAGTATATTGGTCGGT
ATGACGAACACTTCGGCTTCATTAGCTGGTTGTCTTTCTCCATGGGTCAT
TGGCTATTTCACCAATGGTAATGGGCAGTCACCGTGAACCAAATGGATAT
CTCACCAAGTTAGTGTACTTTCCAACAGCGGCATGTCTAATAGCTGTCAA
TTACACTGGATGCGATAATACATCTCTTTCCGTGGCTCTAATGGTCATGT
CGTTGTGCTTTCTAGCGCTCAATCAAGCCCACACGAGAACAGTATCGAAA
AGTGTTTTTCTGTGCAGCGAGTGTGGCCACAGCTGGCGGTTTATTTTGTA
TCATTTTTATGAGTGGGAAAGTGCAACCATGGAATGATATGAACGAAGAG
AAAGAGGGTGAAAGTCCTTCTGGGAATACTGCTTGTGGAAAAAGTATCAA
TGTTTCCGATGAATGTGATGGTTATGACGAGACTGAACATTTAGTTCGTT
CTTAGGTATTGCAGTATATTGGTCGGTATGACGAACACTTCGGCTTCATT
AGCTGGTTGTCTTTCTCCATGGGTCATTGGCTATTTCACCAATGGTAATG
GGCAGTCACCGTGAACCAAATGGATATCTCACCAAGTTAGTGTACTTTCC
AACAGCGGCATGTCTAATAGCTGTCAATTACACTGGATGCGATAATACAT
CTCTTTCCGTGGCTCTAATGGTCATGTCGTTGTGCTTTCTAGCGCTCAAT
CAAGCCCACACGAGAACAGTATCGAAAAGTGTTTTTCTGTGCAGCGAGTG
TGGCCACAGCTGGCGGTTTATTTTGTATCATTTTTATGAGTGGGAAAGTG
CAACCATGGAATGATATGAACGAAGAGAAAGAGGGTGAAAGTCCTTCTGG
GAATACTGCTTGTGGAAAAAGTATCAATGTTTCCGATGAATGTGATGGTT
ATGACGAGACTGAACATTTAGTTCGTTCTTAGGTATTGCAGTATATTGGT
CGGTATGACGAACACTTCGGCTTCATTAGCTGGTTGTCTTTCTCCATGGG
TCATTGGCTATTTCACCAATGGTAATGGGCAGTCACCGTGAACCAAATGG
ATATCTCACCAAGTTAGTGTACTTTCCAACAGCGGCATGTCTAATAGCTG
TCAATTACACTGGATGCGATAATACATCTCTTTCCGTGGCTCTAATGGTC
ATGTCGTTGTGCTTTCTAGCGCTCAATCAAGCCCACACGAGAACAGTATC
GAAAAGTGTTTTTCTGTGCAGCGAGTGTGGCCACAGCTGGCGGTTTATTT
TGTATCATTTTTATGAGTGGGAAAGTGCAACCATGGAATGATATGAACGA
AGAGAAAGAGGGTGAAAGTCCTTCTGGGAATACTGCTTGTGGAAAAAGTA
TCAATGTTTCCGATGAATGTGATGGTTATGACGAGACTGAACATTTAGTT
CGTTCTTAGGTATTGCAGTATATTGGTCGGTATGACGAACACTTCGGCTT
CATTAGCTGGTTGTCTTTCTCCATGGGTCATTGGCTATTTCACCAATGGT
AATGGGCAGTCACCGTGAACCAAATGGATATCTCACCAAGTTAGTGTACT
TTCCAACAGCGGCATGTCTAATAGCTGTCAATTACACTGGATGCGATAAT
ACATCTCTTTCCGTGGCTCTAATGGTCATGTCGTTGTGCTTTCTAGCGCT
CAATCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037856XLOC_037856Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060180-exon-scaffold_336-1575043694:186882..186999TCONS_00060180-exon-scaffold_336-1575043694:186882..186999Clytia hemisphaericaexon
TCONS_00060180-exon-scaffold_336-1575043694:185692..185728TCONS_00060180-exon-scaffold_336-1575043694:185692..185728Clytia hemisphaericaexon
TCONS_00060180-exon-scaffold_336-1575043694:185036..185129TCONS_00060180-exon-scaffold_336-1575043694:185036..185129Clytia hemisphaericaexon
TCONS_00060180-exon-scaffold_336-1575043694:183922..184739TCONS_00060180-exon-scaffold_336-1575043694:183922..184739Clytia hemisphaericaexon
TCONS_00060180-exon-scaffold_336-1510915933:186882..186999TCONS_00060180-exon-scaffold_336-1510915933:186882..186999Clytia hemisphaericaexon
TCONS_00060180-exon-scaffold_336-1510915933:185692..185728TCONS_00060180-exon-scaffold_336-1510915933:185692..185728Clytia hemisphaericaexon
TCONS_00060180-exon-scaffold_336-1510915933:185036..185129TCONS_00060180-exon-scaffold_336-1510915933:185036..185129Clytia hemisphaericaexon
TCONS_00060180-exon-scaffold_336-1510915933:183922..184739TCONS_00060180-exon-scaffold_336-1510915933:183922..184739Clytia hemisphaericaexon
TCONS_00060180-exon-scaffold_336-1491911889:186882..186999TCONS_00060180-exon-scaffold_336-1491911889:186882..186999Clytia hemisphaericaexon
TCONS_00060180-exon-scaffold_336-1491911889:185692..185728TCONS_00060180-exon-scaffold_336-1491911889:185692..185728Clytia hemisphaericaexon
TCONS_00060180-exon-scaffold_336-1491911889:185036..185129TCONS_00060180-exon-scaffold_336-1491911889:185036..185129Clytia hemisphaericaexon
TCONS_00060180-exon-scaffold_336-1491911889:183922..184739TCONS_00060180-exon-scaffold_336-1491911889:183922..184739Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060180-proteinTCONS_00060180-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_336supercontigscaffold_336:183922..186999 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0656248	0	0.866567	0.598718	0.491968	0.384474	1.13802	1.02105	1.43344	0.712787	0.87704	0.915766	0.0276302	0	0	0.0365933	0	0	0	0	0.0612035	0	4.62758	4.10896	0	0.0740568	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020846MFS_dom
Blast
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BLAST of TCONS_00060180 vs. Swiss-Prot (Human)
Match: VGLU2 (Vesicular glutamate transporter 2 OS=Homo sapiens GN=SLC17A6 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.131e-17
Identity = 43/120 (35.83%), Postives = 69/120 (57.50%), Query Frame = 1 
Query:   19 AACLIAVNYTGCDNTSLSVALMVMSLCFLALNQGAVTVNQMDISPRYCSILVGMTNTSASLAGCLSPWVIGYFTNGNPTREQYRKVFFCAASVATAGGLFCIIFMSGKVQPWNDMNEEKE 378
            A  L+ V Y+      ++++ +V+++ F         VN +DI+PRY SIL+G++N   +L+G + P ++G  T  N +RE+++ VF  AA V   G +F  IF SG+ QPW D  E  E
Sbjct:  397 ATLLLVVGYS--HTRGVAISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPIIVGAMTK-NKSREEWQYVFLIAALVHYGGVIFYAIFASGEKQPWADPEETSE 513
The following BLAST results are available for this feature:
BLAST of TCONS_00060180 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VGLU21.131e-1735.83Vesicular glutamate transporter 2 OS=Homo sapiens ... [more]
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