|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060162 ID=TCONS_00060162|Name=TCONS_00060162|organism=Clytia hemisphaerica|type=transcript|length=3043bp
GAGCAATTCAATATAATCCCATATTAAACCAGATTTCCACCATGGATTCT
CTCTATCAGCAAACCAAACAAGTACTTCATTTTCATTATCATCCAGGGAA
ATCAATTCATTCACTACAAAATCAAACCAACCAGACTCTTTATCATGATT
CTTAAATGAACAGCCAgcagaaaaattttctaaaggtGTCCCTTCATTAA
TATATGCTCGAATTTTTTCCCAATCGTTGGTATGAAAATTAAATGCATTT
TCAAAATTGGCATCATTTTTATTGCTCCTCCAACAAGACTTGATATGAAC
CATTTCCCCACCATCTCCTGAAGGCCAGTAAAAATCTTCTCCAAATTTCA
TNTTCAAGATACAAATTAgattcatcaaaacaaaatgttcaATCTACAAG
AGGACGCAATTCAATATAATCCCATACTAAACCAGATTTCCACCATGGAT
TCTCTCTATCAGCAAACCAAACAAGTActtcattttcattattatCCAGG
GAAATCAATTCATTCACTACAAAATCAAACCAACCAGACTCTTTATCGTG
ATTCTTAAATGAACAGCCATCAGGAAAATCTTCTAAAGGTGTCCCTTCAT
TGATATATGCTCGAATTTTTTCCCAATCCTTGGTATGAAAATTAAatgca
ttttcaaaatttgcatCATTTTTATTGCTCCTCCAACAAGACTTAATACG
AACCATTTCCCCAGCACCTCCTGAAGGCCAGTAAAAATCTTCTCCAAACT
TCATTCTCATAACAAACTGATATTCGCCACGCTTAACCAGTTTAAAAGTG
TGTTTCATCTCAAGCCAACAAACATTTTTAAGCCTCAAAACATCATGTTG
GGTATGTTCATCAAACTCTCTTGAAAAGTATTCAGGATTTGTTGAGTGAG
AGAAAGAATCGACTTCTAAACAAGATACACGTAGTGCTCCAATTGTAGAT
GTTTCCATTGTTTCGTGGTGCTTTGACTCGTTATTTGGTTTAATCAAATC
TTCTATTCTGGTTGAttcaatgttttattttatttttcattttcttctga
GAAATGGATGCAAAATTTAGTGTCTACAAAAAAATTCACATTAACAAGGA
AAAGGTTTGTCAAATTgtcgataatttttttatgagcttATGAACAAGGA
ATCCTTCAGAGAGGTAAATATACCTGTTCTTATGAATATTTATGGCTCCT
AGCAAAAActaactcgaaaaaaataagaactgAAATAATACATGAAAACA
CttattaaacaaaaaaagtaagaacagAAGAAAAGTATAGTCACGATATG
ggattttttctttacaaaTCTACTTCTACCAAAAtgttacaagatatttt
tattaatttagaTAAATAAGTTTTTATCAATATTACAGATGTGCTGTTTA
GAGATTTTTGTACAATATTAACTAATCTATACTGTTAGATTTAATTTCAA
CTAGGAAATAAAGGATATTTACTCCTATAAAATCCCTGAAGACTTATAAC
AGGACCGCAGATAAAAAATCACAGCCCTATCATTTACCATTTGTCATTAT
CAACGTTTTTCTAAAtgaggaaaaaaataaagaggACTGTTCATGATTCT
ATTTGCTAATCtgataaaaccaaaaaaaaattaatgcaatgtTTTCTGGG
GTTACAAACATTAACAAAAACAGAATGTTACttacaaaaacaccaaaata
aaaaaaatcagtccctcatagggtacctttttggaagaAGTTCGAAAGAA
tatggaaaattttgagaacattttggaatttcagtcccattcaggatcac
tttttccaaaataatgagtctcacgtagggtccatttttcaaacttcagC
GGCACACCCCTTATcagtcggcaagggtagtacccctcCCCCTCCTGGGG
AAGAAACAAATTAGAAGGGTTTTCTTGTCCTCAAATTACACACTCAAATC
GTGATTACCATTGTCATTCTTTTGTGTTCTTTTACCAAAACTTTAAATTG
TTTATGGCAGACTTCATCCatttaaattgcttttttattCCTGTAGATTC
TTCTTTGTGACCAGCATAAAATGGATTCAACTCGATATAATCCCAAATAA
TACCAGATTTCCATGACTTGTTCTCAATATCCAAAAATTGGGAGAAGACT
TCATTTGTATTACTCTTCAAAACAATTGGTTCATCCATTACCAAATCAAA
CCAACCAGACGCTTTATCATGATTTTGGAAGGAACAGCCGACaggaaaac
catcaaaaacttCTCCATCATCTaaatactttttaatttttacccAATCA
CCTGATTTGAATCGAACTTCATTTTCACAAGGAGGTGAATCTTTATTATT
TTTCCATGAGGTTCTGAATTTCACTAACTTATCATCTCCATAATAACTTG
GCCAACGaaagttttcaccaaatttcATTCTCATAATATATTTATATCGA
CCAGGGTTGACATTTTTGAAAGTATGTTTGATCTCTAGCCAACAGACTGA
TGTAAGCCTCAAAACGTCATGTTCCAGCAAAGTATCCTGTTCTTTCGAAA
AATATGATGGGTTACTAGAATGTGGAAAGAAATCAACATCCGCACATGAT
ATTCGAACACGATCATTGTATAGCTTAGCCAATTTGTAACTTAGCAAAGG
TGATTCAAATGTTGTCAATTGATTTTTTAGCTTGATTTCTTTTGGTGAAA
GATAATGtgttctttcaaaaaattcatgatTCTTTAATTTCTTGGTttca
caaaatttgtaaatgttGCCTTTCATTTCTTGGCAAGTGAGAGCAAAAGC
AAAAAGATCATTTGGGTGCAAAAAACCAAGCATATGAAATAAATCATCTC
CATTTAGTGTTCCAATTGTAGAGCTTTCCATTTTCCTGTTATATGTTTAG
TTTCAGTGACTTGATTTTTCAATGTTTCCTGATTAATGAAAAAGAGAGAA
TTTAGGTTTGAAATATCAAGATTGACCAGATTTAATCTTTGTTCATTCTT
AGGAAAGTAAAGGTGACTTTAGGCCTGACCTGATCAGTCGAAC Run BLAST on NCBI transcript from alignment at scaffold_336:203472..206514+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060162 ID=TCONS_00060162|Name=TCONS_00060162|organism=Clytia hemisphaerica|type=transcript|length=3043bp|location=Sequence derived from alignment at scaffold_336:203472..206514+ (Clytia hemisphaerica)
GAGCAATTCAATATAATCCCATATTAAACCAGATTTCCACCATGGATTCT
CTCTATCAGCAAACCAAACAAGTACTTCATTTTCATTATCATCCAGGGAA
ATCAATTCATTCACTACAAAATCAAACCAACCAGACTCTTTATCATGATT
CTTAAATGAACAGCCAgcagaaaaattttctaaaggtGTCCCTTCATTAA
TATATGCTCGAATTTTTTCCCAATCGTTGGTATGAAAATTAAATGCATTT
TCAAAATTGGCATCATTTTTATTGCTCCTCCAACAAGACTTGATATGAAC
CATTTCCCCACCATCTCCTGAAGGCCAGTAAAAATCTTCTCCAAATTTCA
TNTTCAAGATACAAATTAgattcatcaaaacaaaatgttcaATCTACAAG
AGGACGCAATTCAATATAATCCCATACTAAACCAGATTTCCACCATGGAT
TCTCTCTATCAGCAAACCAAACAAGTActtcattttcattattatCCAGG
GAAATCAATTCATTCACTACAAAATCAAACCAACCAGACTCTTTATCGTG
ATTCTTAAATGAACAGCCATCAGGAAAATCTTCTAAAGGTGTCCCTTCAT
TGATATATGCTCGAATTTTTTCCCAATCCTTGGTATGAAAATTAAatgca
ttttcaaaatttgcatCATTTTTATTGCTCCTCCAACAAGACTTAATACG
AACCATTTCCCCAGCACCTCCTGAAGGCCAGTAAAAATCTTCTCCAAACT
TCATTCTCATAACAAACTGATATTCGCCACGCTTAACCAGTTTAAAAGTG
TGTTTCATCTCAAGCCAACAAACATTTTTAAGCCTCAAAACATCATGTTG
GGTATGTTCATCAAACTCTCTTGAAAAGTATTCAGGATTTGTTGAGTGAG
AGAAAGAATCGACTTCTAAACAAGATACACGTAGTGCTCCAATTGTAGAT
GTTTCCATTGTTTCGTGGTGCTTTGACTCGTTATTTGGTTTAATCAAATC
TTCTATTCTGGTTGAttcaatgttttattttatttttcattttcttctga
GAAATGGATGCAAAATTTAGTGTCTACAAAAAAATTCACATTAACAAGGA
AAAGGTTTGTCAAATTgtcgataatttttttatgagcttATGAACAAGGA
ATCCTTCAGAGAGGTAAATATACCTGTTCTTATGAATATTTATGGCTCCT
AGCAAAAActaactcgaaaaaaataagaactgAAATAATACATGAAAACA
CttattaaacaaaaaaagtaagaacagAAGAAAAGTATAGTCACGATATG
ggattttttctttacaaaTCTACTTCTACCAAAAtgttacaagatatttt
tattaatttagaTAAATAAGTTTTTATCAATATTACAGATGTGCTGTTTA
GAGATTTTTGTACAATATTAACTAATCTATACTGTTAGATTTAATTTCAA
CTAGGAAATAAAGGATATTTACTCCTATAAAATCCCTGAAGACTTATAAC
AGGACCGCAGATAAAAAATCACAGCCCTATCATTTACCATTTGTCATTAT
CAACGTTTTTCTAAAtgaggaaaaaaataaagaggACTGTTCATGATTCT
ATTTGCTAATCtgataaaaccaaaaaaaaattaatgcaatgtTTTCTGGG
GTTACAAACATTAACAAAAACAGAATGTTACttacaaaaacaccaaaata
aaaaaaatcagtccctcatagggtacctttttggaagaAGTTCGAAAGAA
tatggaaaattttgagaacattttggaatttcagtcccattcaggatcac
tttttccaaaataatgagtctcacgtagggtccatttttcaaacttcagC
GGCACACCCCTTATcagtcggcaagggtagtacccctcCCCCTCCTGGGG
AAGAAACAAATTAGAAGGGTTTTCTTGTCCTCAAATTACACACTCAAATC
GTGATTACCATTGTCATTCTTTTGTGTTCTTTTACCAAAACTTTAAATTG
TTTATGGCAGACTTCATCCatttaaattgcttttttattCCTGTAGATTC
TTCTTTGTGACCAGCATAAAATGGATTCAACTCGATATAATCCCAAATAA
TACCAGATTTCCATGACTTGTTCTCAATATCCAAAAATTGGGAGAAGACT
TCATTTGTATTACTCTTCAAAACAATTGGTTCATCCATTACCAAATCAAA
CCAACCAGACGCTTTATCATGATTTTGGAAGGAACAGCCGACaggaaaac
catcaaaaacttCTCCATCATCTaaatactttttaatttttacccAATCA
CCTGATTTGAATCGAACTTCATTTTCACAAGGAGGTGAATCTTTATTATT
TTTCCATGAGGTTCTGAATTTCACTAACTTATCATCTCCATAATAACTTG
GCCAACGaaagttttcaccaaatttcATTCTCATAATATATTTATATCGA
CCAGGGTTGACATTTTTGAAAGTATGTTTGATCTCTAGCCAACAGACTGA
TGTAAGCCTCAAAACGTCATGTTCCAGCAAAGTATCCTGTTCTTTCGAAA
AATATGATGGGTTACTAGAATGTGGAAAGAAATCAACATCCGCACATGAT
ATTCGAACACGATCATTGTATAGCTTAGCCAATTTGTAACTTAGCAAAGG
TGATTCAAATGTTGTCAATTGATTTTTTAGCTTGATTTCTTTTGGTGAAA
GATAATGtgttctttcaaaaaattcatgatTCTTTAATTTCTTGGTttca
caaaatttgtaaatgttGCCTTTCATTTCTTGGCAAGTGAGAGCAAAAGC
AAAAAGATCATTTGGGTGCAAAAAACCAAGCATATGAAATAAATCATCTC
CATTTAGTGTTCCAATTGTAGAGCTTTCCATTTTCCTGTTATATGTTTAG
TTTCAGTGACTTGATTTTTCAATGTTTCCTGATTAATGAAAAAGAGAGAA
TTTAGGTTTGAAATATCAAGATTGACCAGATTTAATCTTTGTTCATTCTT
AGGAAAGTAAAGGTGACTTTAGGCCTGACCTGATCAGTCGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060162-exon-scaffold_336-1491911889:203472..206514 | TCONS_00060162-exon-scaffold_336-1491911889:203472..206514 | Clytia hemisphaerica | exon |
| TCONS_00060162-exon-scaffold_336-1510915933:203472..206514 | TCONS_00060162-exon-scaffold_336-1510915933:203472..206514 | Clytia hemisphaerica | exon |
| TCONS_00060162-exon-scaffold_336-1575043694:203472..206514 | TCONS_00060162-exon-scaffold_336-1575043694:203472..206514 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_336 | supercontig | scaffold_336:203472..206514 + |
Blast
The following BLAST results are available for this feature:
|
