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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059722 ID=TCONS_00059722|Name=TCONS_00059722|organism=Clytia hemisphaerica|type=transcript|length=1482bp
CCTGACCACCAATAgaaatatcaaagaaaacaaCTGGATTTGATGGATTC
GTTGCTCCCGTCGCCATCTTTCTTTTTCCCGCGAGTGATTCTATTTGAGC
AGAGTGGATAAATTCTCTGTGAAATATAGAGaaagttaataatatttttc
actttatgGTAAAATTTAGGAAGAATtgcattcaaaattcaaaagaattc
tttgaaatttgttttataactTTTCCAgtcaaatattcttcaaaatagAT
GTAGTGAATTCAATGAAATAAACATCTTCAATGATCTTTGTGGTTCTAGT
TTATGACTTTTAGAAAGTTGCGGGCGTTTTCGCGCCAAATTTTTCACTGA
ACAGCTGATGATCAGTTGACATTTTTCGGCTAGATTTTTTGAAAATAATC
TCTAAAATATGGATGAGAGTGAAGAAAGGAAAATTAAAAGGGCTGCTGCT
AATGTCAACGAGAGAAGGCGGATGCAAAATATCAATTGTGGATTTGAAGC
TTTGAGAGTAATTTTGAATGTGGAAAACTCGTCCAAACTTAGTAAAagTG
CAATCTTACGTCATGCTGTTGAAATGTTGAGGAACTTGATGTCTGAAAAT
CAACAATTACGTGATCAAAATCAGTTCATGCGCAATCTTTATTGTAATAA
CAACTACAATTCTCAAACAATGCCTCCCTTTCTTCAAACACCAACTTCAA
CTCGTAATCACAAGAAATCAGAATCATCAGAAGAAAGCCCTCGTAAAAGG
TTGAGACTTAATAAAACAGACATCACTGAAAATACTGATCAAAACCAAAC
TACACCAACAGTTCGTTTTAAATTACCAGAAACATCCGAATCACCGGCCA
AATCACCTAAGTCACCTCGCAAATATTCTGCCAACATCAACAAGTTATTA
GCTTCTCCAAAACGCATTACCAGGTCTTCCGTCATTCAACAAAACCTTGC
TTACACATCACCGACACAACCCATTTCTCCACACAAGTTACAACAAACAC
CAATCAGTAGTATTCTTGAATCACCAAGTCGACGATCCTTGCGTTTGATG
GAGAAAGACCAACAACAACTTTATCCCAGTCCCTCACAACCATTAGAAAC
CCCTCCTGCCATCAGATTTACCGACAGTTTCTCTCACCAACCATTCTTCT
ATCCAAGTTCTTCAGCTAAATCGAAATTAGATTTTGAAGATTATCGCAAC
TTGATCTTAACTCCTGAATCAATGAAGATGATGCCACCAAGGAGCGCTAA
GAGAAGTTTGGATGCTATAATTCATGCTATTGATCAGATAGAAAAGTCAT
GAACGAAAATTAATTGATTGTTTAAAAGACATGTCCAGATGGATTTAAAC
CTGCGATTTCAACCACTTTATGTGAAAAGAGAAGGTGGAAATAGAAGTTT
Gcatctaccttaaaggaaggccaaaaaagttttttcagagggaatttgat
ttggcggatggacgaaaaaactaaatttggcg Run BLAST on NCBI protein sequence of AP4 >TCONS_00059722-protein ID=TCONS_00059722-protein|Name=AP4|organism=Clytia hemisphaerica|type=polypeptide|length=297bp
MDESEERKIKRAAANVNERRRMQNINCGFEALRVILNVENSSKLSKSAIL
RHAVEMLRNLMSENQQLRDQNQFMRNLYCNNNYNSQTMPPFLQTPTSTRN
HKKSESSEESPRKRLRLNKTDITENTDQNQTTPTVRFKLPETSESPAKSP
KSPRKYSANINKLLASPKRITRSSVIQQNLAYTSPTQPISPHKLQQTPIS
SILESPSRRSLRLMEKDQQQLYPSPSQPLETPPAIRFTDSFSHQPFFYPS
SSAKSKLDFEDYRNLILTPESMKMMPPRSAKRSLDAIIHAIDQIEKS Run BLAST on NCBI transcript from alignment at scaffold_330:114935..122738- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059722 ID=TCONS_00059722|Name=TCONS_00059722|organism=Clytia hemisphaerica|type=transcript|length=7804bp|location=Sequence derived from alignment at scaffold_330:114935..122738- (Clytia hemisphaerica)
CCTGACCACCAATAGAAATATCAAAGAAAACAACTGGATTTGATGGATTC
GTTGCTCCCGTCGCCATCTTTCTTTTTCCCGCGAGTGATTCTATTTGAGC
AGAGTGGATAAATTCTCTGTGAAATATAGAGAAAGTTAATAATATTTTTC
ACTTTATGGTAAAATTTAGGAAGAATTGCATTCAAAATTCAAAAGAATTC
TTTGAAATTTGTTTTATAACTTTTCCAGTCAAATATTCTTCAAAATAGAT
GTAGTGAATTCAATGAAATAAACATCTTCAATGATCTTTGTGGTTCTAGT
TTATGACTTTTAGAAAGTTGCGGGCGTTTTCGCGCCAAATTTTTCACTGA
ACAGCTGATGATCAGTTGACATTTTTCGGCTAGATTTTTTGGTAAGTAAG
TTCTTTATTCAGCTAGAATTATAGATACTAGCGCTTGTCCATGCGTTCTA
TTTGACTTTTATTTTTCTACTGGTTAAAGAAATCTTTGTTGTATGTATAC
AGTTCCTTGTACTTAGTTTTGAAGCCATCAACAGCATCTTTCCTCCAATC
TTTTATAAAGCCATTAGCATTACTGTCAACTGCTCTAACTTGGGAGGATT
GGTCAAAACATGGGACTGTTGCATATCTGGTCTGTATTTTCACTTACTGT
AAAATCGAAAGAGAAATCGTGCATTTTTTAATACGCCGTTCCTTTAACTC
AAATCTAATGACTTTGGAGGTTCAGTGAAATGGTGGCCGAATTGCCGTCC
CATGTTTTGTCCCAAGTTAGGGGTCATGTCACGTCAAATTGACGCTAAGG
GGTGGGTGGGTTAGAGTCTTTGACGCTAAGAAATTTCACCAGAAATATCG
ATTTTTAATAGGTTTATTCCGTGACAAATGTTACTTTCCATATTTCTTTT
CCTCCTTTTACGTAATAGTTATCGGACAGTTGCGAGTACAATATGAGAAA
TATTTTACGAGTTCCGAGATTTTTCTGTACAATATTTTCTGAGCCTTTAG
GCAAGGAAAATATACGGAAAATTCGGAACGAGTGAAATATTTCCATATTG
TACGAGCAGATATCTGATAACTATAATCTGATAATCAAGAAACTGTGAAA
ATCAATTACAAAACCTACGTCACAACCACAGAGTGCTGACTTTTAGTTTT
AATGACTTGTTCTCACTTGTTTGGTTTCCGTAATAAAAAGAAAGTCGTTA
TTGTGAAATTTGAACATGCTTTAAATGGAGGTATTTCCACTAACTGTCAG
TGCCTGGCACAACGGGCAGCTGTAAAATCCCACCCTTCATATATTTGTTT
CAATAAGTGATCCTAAGGCTTAGGTTTTTTCTCATCTTCAATTTACTGAA
GAAAGAATTTGATGGTGAGAGTTAGATTGTCAACAAAGTCAACAAAATCA
TTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NGAAGCAATCAACGTGGAGAAAACGTAAATAAACAAAGCTGTTGCAAGTT
AAGTCCGTGTTGCAAGTTATGGCCGTTTACGGTACATTGAATAAAAGAAG
AACTTTAAATCTTAAATATTTTCATTTTGAAGAATTGTTGCAAAAATGTG
AAACATGGAAAAGTTTCATTTTTTATTGGTTCAATCGAAATAGGTGATTT
GGAAAACTTTCTATGTTAGGTTTTTTGCACAAACCCGTTGCTAAGATCGA
AATTGAAACTACTGAAAATGCAAGTAAAATCAGCCCGCACTCCAAGTCCC
GTAATCTTGATGTAGGAGTTTAAGCATAGACTGTCAGTGGTTAGGTTTCA
TTTTCGATTTCAAGCCAACATCTTAGCAACAGGGTGCTCGCCCATAATTA
CAGGGGTTTGTGCAAAATAACAAACATAGAAAGTTTTTTCAAAATTCCCC
ATTTTGATTAAAGCAATAAAAAAATTAAACTTTTCCATGTCCAGGCATCG
GTTAATGAATTGTACGCTGCCAGAGGCCAAATCCATTGAACACAATTGAT
CACAATCAAATAATTGGTTGCCATTCAATTGTCCGAAACAACCTTTTCAC
CTGTTGACTTGAAGCATCAAAAATCTCAAACTCATCAAAATGAAAATTCA
ATACCACCAGACAAAAGCTCTCAAAGATTGACTTTTCTGATTACCTTCAA
ATTTACAGATGGGTACACTCTTTTTTTATAAGCATGCTTAGGCTCAAAAT
TGCCAAAAAGTAAGCATAATGCTAAGCATAGCTTGAGGCTGAGGAAACTC
ATCAAATTGCAAAAATAGGGTCAGCGAGACAGTGAGGTAGACAAATGAAT
GAATGAATCTTTTGCTCTATTTGCATAATAATGCATTTGTGTTTATTTAT
CTTTTTATTTTTCCCTCCTCTCCCAATATCCAAATTTTAAATTTACAAAC
CCAAAGAAGCCAGGGGGATTTGATGGCTTACAGGAACTTGTCGCTGAATT
GTTTGAAAAGTGGACCCTGTCAGATATGAATTTTTGGTAAATTTGAGACC
TGGGTGGTCAGAATGAACCATTTTCACCCTGAATAGGGCCAAAAATGACT
AAAAGTAGACCAAAAATTGAAAATATTTCTAATTTTCACCCTGAAAATTG
TCCAAATAACAAAAAGTTGACCCTGTCAGATACACATCTTGAAAATTAGT
AAATTTGGGACATTGTAAGATATTTTTAGAGCCTAAATAAGGGACCCTAA
CCTGGCATGTCCCGTACCCAACTAAGTACATAAGCTAACATCAATAGTTG
TTTCATTTATATGATAAACCCATCAAGAATACAATAAATTAAACATTGGT
ATTATTCAATTAATCAAAGTAGCCCTCACCAGCTATGATCAAGAATTAAA
AGTTAAAAGCTAACCTTGACCATTTTGTACTTTTTATTTATAGAAAATAA
TCTCTAAAATATGGATGAGAGTGAAGAAAGGAAAATTAAAAGGGCTGCTG
CTAATGTCAACGAGAGAAGGCGGATGCAAAATATCAATTGTGGATTTGAA
GCTTTGAGAGTAATTTTGAATGTGGAAAACTCGTCCAAACTTAGTAAAGT
AAGTCAGTGTTTTGTCTATGATTGTTGTCTATGTACGTGTATATCTTCTT
TCATCAAATTTACTTTTTAGACAGGCAGCTGAGGTCACAAAAAAATTGGA
CGGGGTGCGAACAATCCCAAACCACTTTTAATTGAAAATATACAACCTAA
ATATCTAGAAACCATCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAGTACCTGATGACGTC
ATGCGTGCCCATAGGCTAACTGAAAAAAATTTGAGAACCAACATAGACAT
ATTATATACCGATCGAAGCGTTTTTTAACGTAGATTTAGGAAATGGTCAG
TAACCATATCTGAAAATTTTGCTATAAAAAGTTAGAACGCTTTTCTTTTA
TGTCCGTAACGTCAATTTTACCTGTCCGAGACGAAAAAAAAATCAAAAAT
TCAAACTTATCAAAATTGAAATCTAAGACCTCCATTCAAAAGCTCTCAAA
AATCGATATAGAAGACTTTTAAGTGGATATATATGATTTCTCAACTTAAC
TCGAGAAAATCGATCCTAAAGAAAGTGTAAATATGACGTCATCAAAACTT
TGGAAGCTTGTAACTTTTTATTATCAAATTTTCAGACATAGTTACTGACC
TTTTTCTTAATCTACGTCAAAAAACGCGTCGATTGGTATATAATATGTCT
ATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTTCAGAAAGGTCGTATCTATTGAAAACAACTG
TTTAAAGTTTGTTCGCAAACTTTGTAGCTACTGCACTTTTTTATGTGACC
TCAGCTGCCTGACTATTTTTCCAGAGTTGATATTGTAAATAATGTTCAAT
GTTTATATTTTTTTCTAGAGTGCAATCTTACGTCATGCTGTTGAAATGTT
GAGGAACTTGATGTCTGAAAATCAACAATTACGTGATCAAAATCAGTTCA
TGCGCAATCTTTATTGTAATAACAACTACAATTCTCAAACAATGCCTCCC
TTTCTTCAAACACCAACTTCAACTCGTAATCACAAGAAATCAGAATCATC
AGAAGAAAGCCCTCGTAAAAGGTTGAGACTTAATAAAACAGACATCACTG
AAAATACTGATCAAAACCAAACTACACCAACAGTTCGTTTTAAATTACCA
GAAACATCCGAATCACCGGCCAAATCACCTAAGTCACCTCGCAAATATTC
TGCCAACATCAACAAGTTATTAGCTTCTCCAAAACGCATTACCAGGTCTT
CCGTCATTCAACAAAACCTTGCTTACACATCACCGACACAACCCATTTCT
CCACACAAGTTACAACAAACACCAATCAGTAGTATTCTTGAATCACCAAG
TCGACGATCCTTGCGTTTGATGGAGAAAGACCAACAACAACTTTATCCCA
GTCCCTCACAACCATTAGAAACCCCTCCTGCCATCAGATTTACCGACAGT
TTCTCTCACCAACCATTCTTCTATCCAAGTTCTTCAGCTAAATCGAAATT
AGATTTTGAAGATTATCGCAACTTGATCTTAACTCCTGAATCAATGAAGA
TGATGCCACCAAGGAGCGCTAAGAGAAGTTTGGATGCTATAATTCATGCT
ATTGATCAGATAGAAAAGTCATGAACGAAAATTAATTGATTGTTTAAAAG
ACATGTCCAGATGGATTTAAACCTGCGATTTCAACCACTTTATGTGAAAA
GAGAAGGTGGAAATAGAAGTTTGCATCTACCTTAAAGGAAGGCCAAAAAA
GTTTTTTCAGAGGGAATTTGATTTGGCGGATGGACGAAAAAACTAAATTT
GGCG Coding sequence (CDS) from alignment at scaffold_330:114935..122738- >TCONS_00059722 ID=TCONS_00059722|Name=TCONS_00059722|organism=Clytia hemisphaerica|type=CDS|length=1788bp|location=Sequence derived from alignment at scaffold_330:114935..122738- (Clytia hemisphaerica)
AGTGCAATCTTACGTCATGCTGTTGAAATGTTGAGGAACTTGATGTCTGA
AAATCAACAATTACGTGATCAAAATCAGTTCATGCGCAATCTTTATTGTA
ATAACAACTACAATTCTCAAACAATGCCTCCCTTTCTTCAAACACCAACT
TCAACTCGTAATCACAAGAAATCAGAATCATCAGAAGAAAGCCCTCGTAA
AAGGTTGAGACTTAATAAAACAGACATCACTGAAAATACTGATCAAAACC
AAACTACACCAACAGTTCGTTTTAAATTACCAGAAACATCCGAATCACCG
GCCAAATCACCTAAGTCACCTCGCAAATATTCTGCCAACATCAACAAGTT
ATTAGCTTCTCCAAAACGCATTACCAGGTCTTCCGTCATTCAACAAAACC
TTGCTTACACATCACCGACACAACCCATTTCTCCACACAAGTTACAACAA
ACACCAATCAGTAGTATTCTTGAATCACCAAGTCGACGATCCTTGCGTTT
GATGGAGAAAGACCAACAACAACTTTATCCCAGTCCCTCACAACCATTAG
AAACCCCTCCTGCCATCAGATTTACCGACAGTTTCTCTCACCAACCATTC
TTCTATCCAAGTTCTTCAGCTAAATCGAAATTAGATTTTGAAGATTATCG
CAACTTGATCTTAACTCCTGAATCAATGAAGATGATGCCACCAAGGAGCG
CTAAGAGAAGTTTGGATGCTATAATTCATGCTATTGATCAGATAGAAAAG
TCATGAATGGATGAGAGTGAAGAAAGGAAAATTAAAAGGGCTGCTGCTAA
TGTCAACGAGAGAAGGCGGATGCAAAATATCAATTGTGGATTTGAAGCTT
TGAGAGTAATTTTGAATGTGGAAAACTCGTCCAAACTTAGTAAAAGTGCA
ATCTTACGTCATGCTGTTGAAATGTTGAGGAACTTGATGTCTGAAAATCA
ACAATTACGTGATCAAAATCAGTTCATGCGCAATCTTTATTGTAATAACA
ACTACAATTCTCAAACAATGCCTCCCTTTCTTCAAACACCAACTTCAACT
CGTAATCACAAGAAATCAGAATCATCAGAAGAAAGCCCTCGTAAAAGGTT
GAGACTTAATAAAACAGACATCACTGAAAATACTGATCAAAACCAAACTA
CACCAACAGTTCGTTTTAAATTACCAGAAACATCCGAATCACCGGCCAAA
TCACCTAAGTCACCTCGCAAATATTCTGCCAACATCAACAAGTTATTAGC
TTCTCCAAAACGCATTACCAGGTCTTCCGTCATTCAACAAAACCTTGCTT
ACACATCACCGACACAACCCATTTCTCCACACAAGTTACAACAAACACCA
ATCAGTAGTATTCTTGAATCACCAAGTCGACGATCCTTGCGTTTGATGGA
GAAAGACCAACAACAACTTTATCCCAGTCCCTCACAACCATTAGAAACCC
CTCCTGCCATCAGATTTACCGACAGTTTCTCTCACCAACCATTCTTCTAT
CCAAGTTCTTCAGCTAAATCGAAATTAGATTTTGAAGATTATCGCAACTT
GATCTTAACTCCTGAATCAATGAAGATGATGCCACCAAGGAGCGCTAAGA
GAAGTTTGGATGCTATAATTCATGCTATTGATCAGATAGAAAAGTCATGA
ATGGATGAGAGTGAAGAAAGGAAAATTAAAAGGGCTGCTGCTAATGTCAA
CGAGAGAAGGCGGATGCAAAATATCAATTGTGGATTTGAAGCTTTGAGAG
TAATTTTGAATGTGGAAAACTCGTCCAAACTTAGTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059722-exon-scaffold_330-1575043694:122348..122738 | TCONS_00059722-exon-scaffold_330-1575043694:122348..122738 | Clytia hemisphaerica | exon |
| TCONS_00059722-exon-scaffold_330-1575043694:117441..117595 | TCONS_00059722-exon-scaffold_330-1575043694:117441..117595 | Clytia hemisphaerica | exon |
| TCONS_00059722-exon-scaffold_330-1575043694:114935..115870 | TCONS_00059722-exon-scaffold_330-1575043694:114935..115870 | Clytia hemisphaerica | exon |
| TCONS_00059722-exon-scaffold_330-1510915933:122348..122738 | TCONS_00059722-exon-scaffold_330-1510915933:122348..122738 | Clytia hemisphaerica | exon |
| TCONS_00059722-exon-scaffold_330-1510915933:117441..117595 | TCONS_00059722-exon-scaffold_330-1510915933:117441..117595 | Clytia hemisphaerica | exon |
| TCONS_00059722-exon-scaffold_330-1510915933:114935..115870 | TCONS_00059722-exon-scaffold_330-1510915933:114935..115870 | Clytia hemisphaerica | exon |
| TCONS_00059722-exon-scaffold_330-1491911889:122348..122738 | TCONS_00059722-exon-scaffold_330-1491911889:122348..122738 | Clytia hemisphaerica | exon |
| TCONS_00059722-exon-scaffold_330-1491911889:117441..117595 | TCONS_00059722-exon-scaffold_330-1491911889:117441..117595 | Clytia hemisphaerica | exon |
| TCONS_00059722-exon-scaffold_330-1491911889:114935..115870 | TCONS_00059722-exon-scaffold_330-1491911889:114935..115870 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_330 | supercontig | scaffold_330:114935..122738 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011598 | bHLH_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046983 | protein dimerization activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0046983 |
protein dimerization activity |
Blast
The following BLAST results are available for this feature:
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