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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059676 ID=TCONS_00059676|Name=TCONS_00059676|organism=Clytia hemisphaerica|type=transcript|length=407bp
GAAACTTTTTACATGTTTGTAATGTTTAATAGGTGTTCAGGAGTGTCCAT
TTTTATTTACTTGACCTATGAATGGTCTTCGATTTATTTCTTGGTTTAGC
GATTACAATACTGAGCGTTTTCCTTATTGTTTTAGGTCTTTTTATGTTGT
TAATTCCTGTAGGGGTTGTGGTCATCAATTTGTAATCAATACAATACCAC
GACGACGTCTAATCTTTCAACATTGTTTTGTATGGATTAGTGTAAGGAGA
AATCAGAACATATTACTTTCGTCAAATAGAAGAGAGTTGAGTTAAAGaTT
TAATCAATGCGCACCCCATGGTTGTTTAAATCACGGTTGTCAAAAAAAAG
ACGATATATAGATATGTTTAAATCAGAAAGgctgattttggagacatgat
GGCATAG Run BLAST on NCBI transcript from alignment at scaffold_330:195834..200683+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059676 ID=TCONS_00059676|Name=TCONS_00059676|organism=Clytia hemisphaerica|type=transcript|length=4850bp|location=Sequence derived from alignment at scaffold_330:195834..200683+ (Clytia hemisphaerica)
GAAACTTTTTACATGTTTGTAATGTTTAATAGGTGTTCAGGAGTGTCCAT
TTTTATTTACTTGACCTATGAATGGTCTTCGATTTATTTCTTGGTTTAGC
GATTACAATACTGAGCGTTTTCCTTATTGTTTTAGGTCTTTTTATGTTGT
TAATTCCTGTAGGGGTTGTGGTAAGTGGACTTTAGAtaaatgttgttttt
ctttctttttttcatccgTATTTTTNGGTATGAAAATGTAGTCTAATATT
TTTAGCTTAGCTTTATTACTTACTCACAACTTATCTTTATAGAGCTTTCA
ATGTAAATaacttgtaaacaaaaaatcaaaaacgatTTATATTAAATGGT
TACGTTTTACTTCATGTCTAGAGTCTCAAAGAAATATACGTTCGATAAAT
TAACCTGTCAAACCCCCTTTCCTAGACACGCCTCGTTATTTATCCTTGAT
ATCtcatcatttttgccactttgatcattcaaaatgtatttttcacAATA
ATTATCTTTCTTCGTTTAGCAAGAATAAGAATAATAAACTAACAAAACAA
ATGAAGAAATAACAAAATGCTGACGCTGCAAAATTACCACATCCCCATCA
TATGGTAAGTCagtcatcttcattttcaatttcattggtCATAAGAGACC
TTAGCATGTATTTATTATATATACTTCCCTCCTTCTCTCAACTCCgtggc
cgggtagctcagtcggtagagcattcgccttacaatctaagggttgtggg
ttcgatccccggtcaccgccaactcagcggatgatAGCTTAgaagcttag
attgggtaatctgatctaggcggtaagttactgggagctgagagtaggtg
tggcgcccCACCTCAgtattcgatctcccaggtctagcgcaaatagaaaa
ggggatagactccctcactcccggctccgccgacagccaacagatgaata
tacttacttacttacttctCTCCACTATTTCTCTCAGTTTGAACCACGCG
TGATTTTGTGCAGAGATGCTGGCTAAATCGATCTGGCCAGCCAGGGTGCA
GTGCGCAGTGCTGATGAGTCCAGTAAAGACGAAATTCATACACCTGTTCT
GTCCACctaatctcctgagtgaattaAGTCGGACAGAAATTCTtgatttc
ttcacatatatgtTTAATACCTTTTATTCAACATTGCAAGTTAGGACTTC
CAAAAAGTGTTGCTTTTATTTTTCTACCCCTCGAATGAGTTATTGCTTAC
ACTTTACATTACACCAGCACTTAGTATTGATTATACATTAGATAGAAGTA
TAGATAGTATAGATTGAACGATTAGGGCTCAAACTCCCGTTGAAATTCTG
CTAAGATGGTCAGACCGCTAACGCAGCATTGTGTAAAACATTATGATCAG
GAAAACATATTACAATATTTCAGTGATGACCTCTTGTGAGTGAGGTCGAA
TATTTAGTTTTTNTTTAGGTCTTTTTATGTTGTTAATTCCTGTAGGGGTT
GTGGTAAGTGGACTTTAGAtaaatgttgtttttctttctttttttcatcc
gTATTTTTGCGTACCTTTTCCCTTAGGAATCCGAATGAGTTGTGATAGCT
TACAAAATCTTTCTCTCATTTTCGTCGTTATTTCGTTTGACAACTTCTAC
AATTTCATGTTATAGGTCATCAATTTGTAATCAATACAATACCACGACGA
CGTCTAATCTTTCAACATTGTTTTGTATGGATTAGTGTAAGGAGAAATCA
GAACATATTACTTTCGTCAAATAGAAGAGAGTTGAGTTAAAGGTATGAAA
TATGTCTCTTATTTATCTTTTGGAAAATGTATGAAGGTAAATTTTTTTAA
GCTGCCTTCTTGGAACTTCTTGATCAAGCACATAAAGTTCAACATCGAAT
TAccttttcaacggtatataacTATGAAACATTCTGTACCCTTTTTGGTA
CGGTAAATTTATATAACTGGACATTCCACGTATGATCTTGATCCAGTGAC
ATGATGTTGTCAGAGGTTTTAAAAATGGAGAATATTCTTTATAGGTGATA
AGGTTCACAGTGTTTGTTCAATTTAACCCTGGCGTGTTATTAAATTAAGC
CATTTCTCTAAAATAAAACCGTGTGATAAATGATTAATTCCTTATCCCAG
TGTTTCAGTCCCTAGTTACACTTTCGCGAAATTACACATAAAGTATCCTC
TTTCCCTTCTTTTACGAATATCAgtacaaatttttaattttgtttggcCC
TTTTTCGAAGCTAATGGTGACATTATTACATAATGTTTCATACGGAAACA
GCCCGGTTTTTTACCCGTAATGACAAATCTAAACTAtacaaaaattgttc
aaaatttgcCATTGTCAGGTGTTTCCGTTTCTTCAAAAGAAATCATGAAT
TATAATATAAGCAAATAAAGGTAATACGATGCCTCGTATTGAATGTAAGT
ACTGTATTTAGTTTTCATACCGCCTTCCATAATTCTCCTACTGTAaatgc
atacacgttttttataagaatacattttataataacataaggtttcgatg
accaaaatattaaggacAACTtagaatatttcaaggcttcatggacttta
aaacacctaatttcttaggaaattgcacaaaaatactcacaaaatagtaG
AAATGCGaacagaacattttaaagcttagAACTGAGGTTAAAAACTTGCG
TTTATTTTCCTTTATGTGTCAAAGCACCACTCAAACTTGAGGGttgaaaa
atacacaaaaatctTCTCATGACAAGTGTTTTAACACTCTAACCATcgta
aaagaaaacaaactcTTTCTATCATATGTTATAAAATAAACATACAGCTT
TCTAACAAGTTCTTTCTCATGTTTTTGCACAGGCTGAATATTTCCGTAGT
TGGGTAATCAAACATTTTGACTATGTGAATGGTTGAGAGGACGAGAGCCT
ATAAATAAGTAaacttttagagaaaaaaaagcttttaaaatctCCTTACA
AGAATTAGTGATTATCCCTTATCATATTTCATTGGATGTTCGTTTATGAG
CAAATATTTACTGTTTGTTCGTGTTTCTTACACGNTTGGATGTTCGTTTA
TGAGCAAATATTTACGGTTTATTCGTGTTTCTTACACGTGAAAGCAAACA
ACATTTGTAACATGAAATTGTTGTTGTGTAGTACTACATAGTATAAAGTT
CTTCTTCTGTTTTTCGGATCTGTTAAATCTGTTAAATTGAGGGATAATAT
TTGATGGTTGGTTTTGATTGCATAAATTTCGGCTCGTTCTGATTTTTCCA
CTACATTTGAAGAATgtgcttttttcataagaaccaggGAATTCTCAGCT
GTTCTtatgtttttggtgtttttgttgcTTGGAGtgttaaattgttctta
ttcttaTCTCTTATTCCTAACACNCTTATCATATTTCATTGGATGTTCGT
TTATGAGCAAATATTTACGGTTTATTCGTGTTTCTTACACGTGAAAGCAA
ACAACATTTGTAACATGAAATTGTTGTTGTGTAGTACTACATAGTATAAA
GTTCTTCTTCTGTTTTTCGGATCTGTTAAATCGTTAAATCGAGAGATAAT
ATTTGATGATTGGTTTTAATTGTATGAATTTTGGGTCGTTTCTAATTTTT
CCACTTGTTTTGAAGAATgtgcttttttcataagaactagGAAATTCTTA
TTAAGCTCAGCTGCTCTtatgtttttggttttggtgCTTGGAGcgttaaa
ttgttcttattcctATCTTATTTTTAACGCGGAAATGGAGTTTCTTTTAA
GCTTATACCCAATTTGTACAATTTATTTTGACCCttctgacacccctgtc
tcacgtgtaccggtggaacttcttcccacagtcgggataaaaatttctat
tgaaatcccagggggtgatagaaattctattcttCCCAGGTCAGAAGATC
CAGTTtcgatggttttggagtgcaattttttccatCGAATTTCAAATTGG
gatgaaaacattttcaagtGGGTGAAATTGTAGGGCATCCTTCCCACCGG
GGAGGAACTATTAGCAAAATTTTCCATTGTGAAAGTAGCCCAACCGGGTC
TGGTACACAGGTTTGTCTTCTGCAATTAcgaaagtttcttgtttttttgG
GGGGAAATCTGGCACTCAGATTGGCTCTTTAATGCAACATtcctggatgt
tcttattttttcctaaatttcagcctaaatgttcttataaattaggTTCT
AATGAAATGATGTAAAGCCAAAAACCTTCAAACCACCATCATCGCTCAAG
TTTTCCTCCCTTCGACAGGTTCTTTCTGgacggaaaatttaaaataaaga
aatccAGTCTTCATTCAAGTTTTGTGAAACATGAATGTTTAGtatgaaaa
tttcatatttgacaaaagaatattttgttgGTACATACATTTTTAAAGAG
GGTAAGGTCGAAGTTTATCCCCTTCTTCAAAAGTTTTTCCgtaaatattg
atattttacaATAACTTAGAGGCTCGAAAAAGTAAAGTGAAACGTTGAAA
GGCTagacaaaaaaaatgtttttcgagaGACTTTAATCAAACCTTCTTTA
TGGCTTGCCTGCctgtgatattttttggattccTTCATTGTTTGGTTGGT
ATAGTTGTCAGACCTtgcattttgataaaaacatgaCGACCACGGTCAAT
TCCAATGGATTTATgccaatctttttttttgtacttttagaTTTAATCAA
TGCGCACCCCATGGTTGTTTAAATCACGGTTGTCAAAAAAAAGACGATAT
ATAGATATGTTTAAATCAGAAAGgctgattttggagacatgatGGCATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059676-exon-scaffold_330-1491911889:195834..196003 | TCONS_00059676-exon-scaffold_330-1491911889:195834..196003 | Clytia hemisphaerica | exon |
| TCONS_00059676-exon-scaffold_330-1510915933:195834..196003 | TCONS_00059676-exon-scaffold_330-1510915933:195834..196003 | Clytia hemisphaerica | exon |
| TCONS_00059676-exon-scaffold_330-1575043694:195834..196003 | TCONS_00059676-exon-scaffold_330-1575043694:195834..196003 | Clytia hemisphaerica | exon |
| TCONS_00059676-exon-scaffold_330-1491911889:197499..197625 | TCONS_00059676-exon-scaffold_330-1491911889:197499..197625 | Clytia hemisphaerica | exon |
| TCONS_00059676-exon-scaffold_330-1510915933:197499..197625 | TCONS_00059676-exon-scaffold_330-1510915933:197499..197625 | Clytia hemisphaerica | exon |
| TCONS_00059676-exon-scaffold_330-1575043694:197499..197625 | TCONS_00059676-exon-scaffold_330-1575043694:197499..197625 | Clytia hemisphaerica | exon |
| TCONS_00059676-exon-scaffold_330-1491911889:200574..200683 | TCONS_00059676-exon-scaffold_330-1491911889:200574..200683 | Clytia hemisphaerica | exon |
| TCONS_00059676-exon-scaffold_330-1510915933:200574..200683 | TCONS_00059676-exon-scaffold_330-1510915933:200574..200683 | Clytia hemisphaerica | exon |
| TCONS_00059676-exon-scaffold_330-1575043694:200574..200683 | TCONS_00059676-exon-scaffold_330-1575043694:200574..200683 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_330 | supercontig | scaffold_330:195834..200683 + |
Blast
The following BLAST results are available for this feature:
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