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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059663 ID=TCONS_00059663|Name=TCONS_00059663|organism=Clytia hemisphaerica|type=transcript|length=2284bp
GTTGATACTAGCCTGACACAGTAGTAATGGATTCCATCTTATATTTCTCA
ACAGCCATATAAAGTTGAATAATTTATTAGCCTGGGCATGCAAATTTAGA
GTTTTCTTTTGTAGCTACATTAGAGTATAGGCTAAATAATTCATTATATG
AACTGCAGCGTTTCATGCGTTTTTACACTTTTTCGTgaatgtgaaaaagt
gaaagaagAGGCTTTTCTTAATGTAATATTATCgctattgggctcttcca
gaaaaaaaccattcatggggggtggaggatatattgtccaggggtattgg
aaaaaaccctgaaaaactgccatgcCCATGGGGTAAATCTgcgatgtcca
ggggtaaatattTGTGTCCAGGGAGTCAacttgatgcttgtccaggggta
aaacacgtgtccagggggtgaaaaatcgaaatgtccaggggtagatcaca
gaaaaaataatatatcctccaccccccatgaaggaattttttctggaaaa
gcccattgaaaCATTTTATGAAGCTTGGTTGATTGAGTGAGATCTTTTGT
GGATTTGACTTGCGATGGAAGAGGTTGAGAAGGAATATGTTGGAAAAGCG
AGAGAGATGATCTCCTCTCCAGAGATCGATGAAGATTATTATAAAGAAGT
GTCTGAACTCGAAAATCATGAACGTGACGCTGAAGAAGAGGGGGAGAGGA
ATAATAACAATGATTTACCCAACCGAAATGAACTGATTAAGGATGATAAA
ACTGTCGAAAAAACTGTTGATGATCTTCTACGTCGTGACGATGAAAACAA
AGATGAAGATTATATCATGTGGGATTTGAAGACATCGATTCGTTCAGGAG
AGCAGAAGAATAAATTTGTAACGGAGAACATCGAAAAGATCGAAAACCAT
TTTCCGCAGATGGTACAAGACATCAACCTCTACACTGTTCGATCTGCGAA
ACTCCGCGATGCTGGCGatcaattctctaaatcattANTACACTGTTCGA
TCTGCAAAACTCCGCGATGCTGGCGATCAATTCTCGAAATCATTGCGCCA
ATACGCGGGCACAGAAGTCCCTGCATTGCAACAAGGATTAGGCGCGTTTG
CTGAATGTTTTGCCGCGGTTCAAGATCACCGAAACGCGCTTGTAACACGT
TTAGAGAATCGTGTTGTTCAAGGATTCGCTGTGTATGAAACGCGATGTAA
ACAAGCGCGTGTGGATGTCAAACAACACAACACAGCCCACACAAAGGAAG
TCAGGGAACACAAAtcctttgaaaatgtcaaatcCAAAAGCACACAACAA
TTTGAACTCGCAAAAGCTGAAACGAAATTCAAAAAAGCTGCCGAAGAAGC
GAACCGGTCCGCCAACACTTTGAAAGATCAAATTTCCGATTTCGAAAGAC
AGAAAACTCGAGATTTGAAGAAAGTGTTTGGTGAATTTATGTTGAGCGAG
ATGATGTTTTACGCGAAAGCGCTCGAAATTTACACGCGGGCTTACCAAGA
ACTGAACGAAATAGATGAAGAAGAGGGAATCGATCAGCTACATCAATCAT
TGAAATTATCGCAACCACAACTGACGCCTGGTGGTGGTGGCGGAGGTTAT
ATGTATGGCGGATCCGCCCCCACCCTAGCCACGCCTCAACATCAACCCCA
TCGCTCACATTCCGCTTCGACGCCGCAGCTTGAGCGGACTTTTTAGAAGA
CTAGACGAAAGATGATATTAAGAACTACCTTTGgtgttttagttttttaa
gattttaggtTTCACAAATTATTACAAATTTTTATTAGCAACCCAGATTT
ATGGCTCAGGGCTTAAATTGCTAGGTCAATCTCTGAGAAATTTCCCATAA
CGACCCCCTATAGTATACCATAATAAAGATTATTAGGCCAAGGGCGATAG
TTAGCTTCTTCATTAGttagattttttctaaaaaagtttcttttttacgA
GATGGTGAAATTCATTTGGCTGACTTCAGGACCCTCGAGCCATGATTGCT
TAAAAAAGTGTTCTCAGATTTTCTCACGTTCCATATTTTGAGGGTTTGAT
CGAGATGAACTGTaggattcaaattttttttacaatgtaaaatttttatt
tattttgctaACTTCCTTTGTGCTTGATTATTACAGGGCATTCTCGTACT
CTTacgttccaaataaacggggagggggccctaattgccggggggttgga
taTTGttcttctgaaaacccaaaatacGGTTAATATAGCCTAAAATCAGG
ttatctggaaggtttacattacggaattttgcga Run BLAST on NCBI protein sequence of TCONS_00059663-protein >TCONS_00059663-protein ID=TCONS_00059663-protein|Name=TCONS_00059663-protein|organism=Clytia hemisphaerica|type=polypeptide|length=245bp
MLAINSLNHXYTVRSAKLRDAGDQFSKSLRQYAGTEVPALQQGLGAFAEC
FAAVQDHRNALVTRLENRVVQGFAVYETRCKQARVDVKQHNTAHTKEVRE
HKSFENVKSKSTQQFELAKAETKFKKAAEEANRSANTLKDQISDFERQKT
RDLKKVFGEFMLSEMMFYAKALEIYTRAYQELNEIDEEEGIDQLHQSLKL
SQPQLTPGGGGGGYMYGGSAPTLATPQHQPHRSHSASTPQLERTF Run BLAST on NCBI transcript from alignment at scaffold_330:37331..39847+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059663 ID=TCONS_00059663|Name=TCONS_00059663|organism=Clytia hemisphaerica|type=transcript|length=2517bp|location=Sequence derived from alignment at scaffold_330:37331..39847+ (Clytia hemisphaerica)
GTTGATACTAGCCTGACACAGTAGTAATGGATTCCATCTTATATTTCTCA
ACAGCCATATAAAGTTGAATAATTTATTAGCCTGGGCATGCAAATTTAGA
GTTTTCTTTTGTAGCTACATTAGAGTATAGGCTAAATAATTCATTATATG
AACTGCAGCGTTTCATGCGTTTTTACACTTTTTCGTgaatgtgaaaaagt
gaaagaagAGGCTTTTCTTAATGTAATATTATCgctattgggctcttcca
gaaaaaaaccattcatggggggtggaggatatattgtccaggggtattgg
aaaaaaccctgaaaaactgccatgcCCATGGGGTAAATCTgcgatgtcca
ggggtaaatattTGTGTCCAGGGAGTCAacttgatgcttgtccaggggta
aaacacgtgtccagggggtgaaaaatcgaaatgtccaggggtagatcaca
gaaaaaataatatatcctccaccccccatgaaggaattttttctggaaaa
gcccattgaaaCATTTTATGAAGCTTGGTTGATTGAGTGAGATCTTTTGT
GGATTTGACTTGCGATGGAAGAGGTTGAGAAGGAATATGTTGGAAAAGCG
AGAGAGATGATCTCCTCTCCAGAGATCGATGAAGATTATTATAAAGAAGT
GTCTGAACTCGAAAATCATGAACGTGACGCTGAAGAAGAGGGGGAGAGGA
ATAATAACAATGATTTACCCAACCGAAATGAACTGATTAAGGATGATAAA
ACTGTCGAAAAAACTGTTGATGATCTTCTACGTCGTGACGATGAAAACAA
AGATGAAGATTATATCATGTGTACACGTCTACCTCTTCACCTTCTCTGCA
AAATGTTTAAATTTGTTATCTGCTTCTTCGTCCTCTccttctctctctct
ctacgAGATAGAAAGAAGGAATAGATGGGTATTTTGATTTAGATAAGAAT
AACTTCAAGTTTTTTTGCCAGCAGGGAAAGATTTTTGACGTTTACTTGGG
TCTAACGCTGAAAGAAATCTGCTTTCTATCACAAATCTTCTTTATCTTTA
CAGGGGATTTGAAGACATCGATTCGTTCAGGAGAGCAGAAGAATAAATTT
GTAACGGAGAACATCGAAAAGATCGAAAACCATTTTCCGCAGATGGTACA
AGACATCAACCTCTACACTGTTCGATCTGCGAAACTCCGCGATGCTGGCG
atcaattctctaaatcattANTACACTGTTCGATCTGCAAAACTCCGCGA
TGCTGGCGATCAATTCTCGAAATCATTGCGCCAATACGCGGGCACAGAAG
TCCCTGCATTGCAACAAGGATTAGGCGCGTTTGCTGAATGTTTTGCCGCG
GTTCAAGATCACCGAAACGCGCTTGTAACACGTTTAGAGAATCGTGTTGT
TCAAGGATTCGCTGTGTATGAAACGCGATGTAAACAAGCGCGTGTGGATG
TCAAACAACACAACACAGCCCACACAAAGGAAGTCAGGGAACACAAAtcc
tttgaaaatgtcaaatcCAAAAGCACACAACAATTTGAACTCGCAAAAGC
TGAAACGAAATTCAAAAAAGCTGCCGAAGAAGCGAACCGGTCCGCCAACA
CTTTGAAAGATCAAATTTCCGATTTCGAAAGACAGAAAACTCGAGATTTG
AAGAAAGTGTTTGGTGAATTTATGTTGAGCGAGATGATGTTTTACGCGAA
AGCGCTCGAAATTTACACGCGGGCTTACCAAGAACTGAACGAAATAGATG
AAGAAGAGGGAATCGATCAGCTACATCAATCATTGAAATTATCGCAACCA
CAACTGACGCCTGGTGGTGGTGGCGGAGGTTATATGTATGGCGGATCCGC
CCCCACCCTAGCCACGCCTCAACATCAACCCCATCGCTCACATTCCGCTT
CGACGCCGCAGCTTGAGCGGACTTTTTAGAAGACTAGACGAAAGATGATA
TTAAGAACTACCTTTGgtgttttagttttttaagattttaggtTTCACAA
ATTATTACAAATTTTTATTAGCAACCCAGATTTATGGCTCAGGGCTTAAA
TTGCTAGGTCAATCTCTGAGAAATTTCCCATAACGACCCCCTATAGTATA
CCATAATAAAGATTATTAGGCCAAGGGCGATAGTTAGCTTCTTCATTAGt
tagattttttctaaaaaagtttcttttttacgAGATGGTGAAATTCATTT
GGCTGACTTCAGGACCCTCGAGCCATGATTGCTTAAAAAAGTGTTCTCAG
ATTTTCTCACGTTCCATATTTTGAGGGTTTGATCGAGATGAACTGTagga
ttcaaattttttttacaatgtaaaatttttatttattttgctaACTTCCT
TTGTGCTTGATTATTACAGGGCATTCTCGTACTCTTacgttccaaataaa
cggggagggggccctaattgccggggggttggataTTGttcttctgaaaa
cccaaaatacGGTTAATATAGCCTAAAATCAGGttatctggaaggtttac
attacggaattttgcga Coding sequence (CDS) from alignment at scaffold_330:37331..39847+ >TCONS_00059663 ID=TCONS_00059663|Name=TCONS_00059663|organism=Clytia hemisphaerica|type=CDS|length=738bp|location=Sequence derived from alignment at scaffold_330:37331..39847+ (Clytia hemisphaerica)
ATGCTGGCGatcaattctctaaatcattANTACACTGTTCGATCTGCAAA
ACTCCGCGATGCTGGCGATCAATTCTCGAAATCATTGCGCCAATACGCGG
GCACAGAAGTCCCTGCATTGCAACAAGGATTAGGCGCGTTTGCTGAATGT
TTTGCCGCGGTTCAAGATCACCGAAACGCGCTTGTAACACGTTTAGAGAA
TCGTGTTGTTCAAGGATTCGCTGTGTATGAAACGCGATGTAAACAAGCGC
GTGTGGATGTCAAACAACACAACACAGCCCACACAAAGGAAGTCAGGGAA
CACAAAtcctttgaaaatgtcaaatcCAAAAGCACACAACAATTTGAACT
CGCAAAAGCTGAAACGAAATTCAAAAAAGCTGCCGAAGAAGCGAACCGGT
CCGCCAACACTTTGAAAGATCAAATTTCCGATTTCGAAAGACAGAAAACT
CGAGATTTGAAGAAAGTGTTTGGTGAATTTATGTTGAGCGAGATGATGTT
TTACGCGAAAGCGCTCGAAATTTACACGCGGGCTTACCAAGAACTGAACG
AAATAGATGAAGAAGAGGGAATCGATCAGCTACATCAATCATTGAAATTA
TCGCAACCACAACTGACGCCTGGTGGTGGTGGCGGAGGTTATATGTATGG
CGGATCCGCCCCCACCCTAGCCACGCCTCAACATCAACCCCATCGCTCAC
ATTCCGCTTCGACGCCGCAGCTTGAGCGGACTTTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059663-exon-scaffold_330-1491911889:37331..38150 | TCONS_00059663-exon-scaffold_330-1491911889:37331..38150 | Clytia hemisphaerica | exon |
| TCONS_00059663-exon-scaffold_330-1510915933:37331..38150 | TCONS_00059663-exon-scaffold_330-1510915933:37331..38150 | Clytia hemisphaerica | exon |
| TCONS_00059663-exon-scaffold_330-1575043694:37331..38150 | TCONS_00059663-exon-scaffold_330-1575043694:37331..38150 | Clytia hemisphaerica | exon |
| TCONS_00059663-exon-scaffold_330-1491911889:38384..39847 | TCONS_00059663-exon-scaffold_330-1491911889:38384..39847 | Clytia hemisphaerica | exon |
| TCONS_00059663-exon-scaffold_330-1510915933:38384..39847 | TCONS_00059663-exon-scaffold_330-1510915933:38384..39847 | Clytia hemisphaerica | exon |
| TCONS_00059663-exon-scaffold_330-1575043694:38384..39847 | TCONS_00059663-exon-scaffold_330-1575043694:38384..39847 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_330 | supercontig | scaffold_330:37331..39847 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00059663 vs. Swiss-Prot (Human)
Match: FA92A (Protein FAM92A OS=Homo sapiens GN=FAM92A PE=1 SV=2) HSP 1 Score: 127.102 bits (318), Expect = 7.984e-32 Identity = 75/189 (39.68%), Postives = 119/189 (62.96%), Query Frame = 2
Query: 989 YTVRSAKLRDAGDQFSKSLRQYAGTEVPALQQGLGAFAECFAAVQDHRNALVTRLENRVVQGFAVYETRCKQARVDVKQHNTAHTKEVREHKSFENVKSKS-TQQFXXXXXXXXXXXXXXXXNRSANTLKDQISDFERQKTRDLKKVFGEFMLSEMMFYAKALEIYTRAYQELNEIDEEEGIDQLHQSL 1552
Y ++A+LRD D + YA TE P L+ GL FA+ FA +QD+R A V RLE +VV+ Y T K R D+K TA +E ++ E + ++ + + +++AET+ ++AA +A+R++ L++ I++FERQK +D+K +F EF+ EM+F+ KALE+YT AYQ + IDE+E ++ SL
Sbjct: 37 YVRKTARLRDKADLLVNEINAYAATETPHLKLGLMNFADEFAKLQDYRQAEVERLEAKVVEPLKTYGTIVKMKRDDLKATLTARNREAKQLTQLERTRQRNPSDRHVISQAETELQRAAMDASRTSRHLEETINNFERQKMKDIKTIFSEFITIEMLFHGKALEVYTAAYQNIQNIDEDEDLEVFRNSL 225
The following BLAST results are available for this feature:
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