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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059663 ID=TCONS_00059663|Name=TCONS_00059663|organism=Clytia hemisphaerica|type=transcript|length=2284bp GTTGATACTAGCCTGACACAGTAGTAATGGATTCCATCTTATATTTCTCA ACAGCCATATAAAGTTGAATAATTTATTAGCCTGGGCATGCAAATTTAGA GTTTTCTTTTGTAGCTACATTAGAGTATAGGCTAAATAATTCATTATATG AACTGCAGCGTTTCATGCGTTTTTACACTTTTTCGTgaatgtgaaaaagt gaaagaagAGGCTTTTCTTAATGTAATATTATCgctattgggctcttcca gaaaaaaaccattcatggggggtggaggatatattgtccaggggtattgg aaaaaaccctgaaaaactgccatgcCCATGGGGTAAATCTgcgatgtcca ggggtaaatattTGTGTCCAGGGAGTCAacttgatgcttgtccaggggta aaacacgtgtccagggggtgaaaaatcgaaatgtccaggggtagatcaca gaaaaaataatatatcctccaccccccatgaaggaattttttctggaaaa gcccattgaaaCATTTTATGAAGCTTGGTTGATTGAGTGAGATCTTTTGT GGATTTGACTTGCGATGGAAGAGGTTGAGAAGGAATATGTTGGAAAAGCG AGAGAGATGATCTCCTCTCCAGAGATCGATGAAGATTATTATAAAGAAGT GTCTGAACTCGAAAATCATGAACGTGACGCTGAAGAAGAGGGGGAGAGGA ATAATAACAATGATTTACCCAACCGAAATGAACTGATTAAGGATGATAAA ACTGTCGAAAAAACTGTTGATGATCTTCTACGTCGTGACGATGAAAACAA AGATGAAGATTATATCATGTGGGATTTGAAGACATCGATTCGTTCAGGAG AGCAGAAGAATAAATTTGTAACGGAGAACATCGAAAAGATCGAAAACCAT TTTCCGCAGATGGTACAAGACATCAACCTCTACACTGTTCGATCTGCGAA ACTCCGCGATGCTGGCGatcaattctctaaatcattANTACACTGTTCGA TCTGCAAAACTCCGCGATGCTGGCGATCAATTCTCGAAATCATTGCGCCA ATACGCGGGCACAGAAGTCCCTGCATTGCAACAAGGATTAGGCGCGTTTG CTGAATGTTTTGCCGCGGTTCAAGATCACCGAAACGCGCTTGTAACACGT TTAGAGAATCGTGTTGTTCAAGGATTCGCTGTGTATGAAACGCGATGTAA ACAAGCGCGTGTGGATGTCAAACAACACAACACAGCCCACACAAAGGAAG TCAGGGAACACAAAtcctttgaaaatgtcaaatcCAAAAGCACACAACAA TTTGAACTCGCAAAAGCTGAAACGAAATTCAAAAAAGCTGCCGAAGAAGC GAACCGGTCCGCCAACACTTTGAAAGATCAAATTTCCGATTTCGAAAGAC AGAAAACTCGAGATTTGAAGAAAGTGTTTGGTGAATTTATGTTGAGCGAG ATGATGTTTTACGCGAAAGCGCTCGAAATTTACACGCGGGCTTACCAAGA ACTGAACGAAATAGATGAAGAAGAGGGAATCGATCAGCTACATCAATCAT TGAAATTATCGCAACCACAACTGACGCCTGGTGGTGGTGGCGGAGGTTAT ATGTATGGCGGATCCGCCCCCACCCTAGCCACGCCTCAACATCAACCCCA TCGCTCACATTCCGCTTCGACGCCGCAGCTTGAGCGGACTTTTTAGAAGA CTAGACGAAAGATGATATTAAGAACTACCTTTGgtgttttagttttttaa gattttaggtTTCACAAATTATTACAAATTTTTATTAGCAACCCAGATTT ATGGCTCAGGGCTTAAATTGCTAGGTCAATCTCTGAGAAATTTCCCATAA CGACCCCCTATAGTATACCATAATAAAGATTATTAGGCCAAGGGCGATAG TTAGCTTCTTCATTAGttagattttttctaaaaaagtttcttttttacgA GATGGTGAAATTCATTTGGCTGACTTCAGGACCCTCGAGCCATGATTGCT TAAAAAAGTGTTCTCAGATTTTCTCACGTTCCATATTTTGAGGGTTTGAT CGAGATGAACTGTaggattcaaattttttttacaatgtaaaatttttatt tattttgctaACTTCCTTTGTGCTTGATTATTACAGGGCATTCTCGTACT CTTacgttccaaataaacggggagggggccctaattgccggggggttgga taTTGttcttctgaaaacccaaaatacGGTTAATATAGCCTAAAATCAGG ttatctggaaggtttacattacggaattttgcga Run BLAST on NCBI protein sequence of TCONS_00059663-protein >TCONS_00059663-protein ID=TCONS_00059663-protein|Name=TCONS_00059663-protein|organism=Clytia hemisphaerica|type=polypeptide|length=245bp
MLAINSLNHXYTVRSAKLRDAGDQFSKSLRQYAGTEVPALQQGLGAFAEC FAAVQDHRNALVTRLENRVVQGFAVYETRCKQARVDVKQHNTAHTKEVRE HKSFENVKSKSTQQFELAKAETKFKKAAEEANRSANTLKDQISDFERQKT RDLKKVFGEFMLSEMMFYAKALEIYTRAYQELNEIDEEEGIDQLHQSLKL SQPQLTPGGGGGGYMYGGSAPTLATPQHQPHRSHSASTPQLERTF Run BLAST on NCBI transcript from alignment at scaffold_330:37331..39847+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059663 ID=TCONS_00059663|Name=TCONS_00059663|organism=Clytia hemisphaerica|type=transcript|length=2517bp|location=Sequence derived from alignment at scaffold_330:37331..39847+ (Clytia hemisphaerica) GTTGATACTAGCCTGACACAGTAGTAATGGATTCCATCTTATATTTCTCA
ACAGCCATATAAAGTTGAATAATTTATTAGCCTGGGCATGCAAATTTAGA
GTTTTCTTTTGTAGCTACATTAGAGTATAGGCTAAATAATTCATTATATG
AACTGCAGCGTTTCATGCGTTTTTACACTTTTTCGTgaatgtgaaaaagt
gaaagaagAGGCTTTTCTTAATGTAATATTATCgctattgggctcttcca
gaaaaaaaccattcatggggggtggaggatatattgtccaggggtattgg
aaaaaaccctgaaaaactgccatgcCCATGGGGTAAATCTgcgatgtcca
ggggtaaatattTGTGTCCAGGGAGTCAacttgatgcttgtccaggggta
aaacacgtgtccagggggtgaaaaatcgaaatgtccaggggtagatcaca
gaaaaaataatatatcctccaccccccatgaaggaattttttctggaaaa
gcccattgaaaCATTTTATGAAGCTTGGTTGATTGAGTGAGATCTTTTGT
GGATTTGACTTGCGATGGAAGAGGTTGAGAAGGAATATGTTGGAAAAGCG
AGAGAGATGATCTCCTCTCCAGAGATCGATGAAGATTATTATAAAGAAGT
GTCTGAACTCGAAAATCATGAACGTGACGCTGAAGAAGAGGGGGAGAGGA
ATAATAACAATGATTTACCCAACCGAAATGAACTGATTAAGGATGATAAA
ACTGTCGAAAAAACTGTTGATGATCTTCTACGTCGTGACGATGAAAACAA
AGATGAAGATTATATCATGTGTACACGTCTACCTCTTCACCTTCTCTGCA
AAATGTTTAAATTTGTTATCTGCTTCTTCGTCCTCTccttctctctctct
ctacgAGATAGAAAGAAGGAATAGATGGGTATTTTGATTTAGATAAGAAT
AACTTCAAGTTTTTTTGCCAGCAGGGAAAGATTTTTGACGTTTACTTGGG
TCTAACGCTGAAAGAAATCTGCTTTCTATCACAAATCTTCTTTATCTTTA
CAGGGGATTTGAAGACATCGATTCGTTCAGGAGAGCAGAAGAATAAATTT
GTAACGGAGAACATCGAAAAGATCGAAAACCATTTTCCGCAGATGGTACA
AGACATCAACCTCTACACTGTTCGATCTGCGAAACTCCGCGATGCTGGCG
atcaattctctaaatcattANTACACTGTTCGATCTGCAAAACTCCGCGA
TGCTGGCGATCAATTCTCGAAATCATTGCGCCAATACGCGGGCACAGAAG
TCCCTGCATTGCAACAAGGATTAGGCGCGTTTGCTGAATGTTTTGCCGCG
GTTCAAGATCACCGAAACGCGCTTGTAACACGTTTAGAGAATCGTGTTGT
TCAAGGATTCGCTGTGTATGAAACGCGATGTAAACAAGCGCGTGTGGATG
TCAAACAACACAACACAGCCCACACAAAGGAAGTCAGGGAACACAAAtcc
tttgaaaatgtcaaatcCAAAAGCACACAACAATTTGAACTCGCAAAAGC
TGAAACGAAATTCAAAAAAGCTGCCGAAGAAGCGAACCGGTCCGCCAACA
CTTTGAAAGATCAAATTTCCGATTTCGAAAGACAGAAAACTCGAGATTTG
AAGAAAGTGTTTGGTGAATTTATGTTGAGCGAGATGATGTTTTACGCGAA
AGCGCTCGAAATTTACACGCGGGCTTACCAAGAACTGAACGAAATAGATG
AAGAAGAGGGAATCGATCAGCTACATCAATCATTGAAATTATCGCAACCA
CAACTGACGCCTGGTGGTGGTGGCGGAGGTTATATGTATGGCGGATCCGC
CCCCACCCTAGCCACGCCTCAACATCAACCCCATCGCTCACATTCCGCTT
CGACGCCGCAGCTTGAGCGGACTTTTTAGAAGACTAGACGAAAGATGATA
TTAAGAACTACCTTTGgtgttttagttttttaagattttaggtTTCACAA
ATTATTACAAATTTTTATTAGCAACCCAGATTTATGGCTCAGGGCTTAAA
TTGCTAGGTCAATCTCTGAGAAATTTCCCATAACGACCCCCTATAGTATA
CCATAATAAAGATTATTAGGCCAAGGGCGATAGTTAGCTTCTTCATTAGt
tagattttttctaaaaaagtttcttttttacgAGATGGTGAAATTCATTT
GGCTGACTTCAGGACCCTCGAGCCATGATTGCTTAAAAAAGTGTTCTCAG
ATTTTCTCACGTTCCATATTTTGAGGGTTTGATCGAGATGAACTGTagga
ttcaaattttttttacaatgtaaaatttttatttattttgctaACTTCCT
TTGTGCTTGATTATTACAGGGCATTCTCGTACTCTTacgttccaaataaa
cggggagggggccctaattgccggggggttggataTTGttcttctgaaaa
cccaaaatacGGTTAATATAGCCTAAAATCAGGttatctggaaggtttac
attacggaattttgcga Coding sequence (CDS) from alignment at scaffold_330:37331..39847+ >TCONS_00059663 ID=TCONS_00059663|Name=TCONS_00059663|organism=Clytia hemisphaerica|type=CDS|length=738bp|location=Sequence derived from alignment at scaffold_330:37331..39847+ (Clytia hemisphaerica) ATGCTGGCGatcaattctctaaatcattANTACACTGTTCGATCTGCAAA ACTCCGCGATGCTGGCGATCAATTCTCGAAATCATTGCGCCAATACGCGG GCACAGAAGTCCCTGCATTGCAACAAGGATTAGGCGCGTTTGCTGAATGT TTTGCCGCGGTTCAAGATCACCGAAACGCGCTTGTAACACGTTTAGAGAA TCGTGTTGTTCAAGGATTCGCTGTGTATGAAACGCGATGTAAACAAGCGC GTGTGGATGTCAAACAACACAACACAGCCCACACAAAGGAAGTCAGGGAA CACAAAtcctttgaaaatgtcaaatcCAAAAGCACACAACAATTTGAACT CGCAAAAGCTGAAACGAAATTCAAAAAAGCTGCCGAAGAAGCGAACCGGT CCGCCAACACTTTGAAAGATCAAATTTCCGATTTCGAAAGACAGAAAACT CGAGATTTGAAGAAAGTGTTTGGTGAATTTATGTTGAGCGAGATGATGTT TTACGCGAAAGCGCTCGAAATTTACACGCGGGCTTACCAAGAACTGAACG AAATAGATGAAGAAGAGGGAATCGATCAGCTACATCAATCATTGAAATTA TCGCAACCACAACTGACGCCTGGTGGTGGTGGCGGAGGTTATATGTATGG CGGATCCGCCCCCACCCTAGCCACGCCTCAACATCAACCCCATCGCTCAC ATTCCGCTTCGACGCCGCAGCTTGAGCGGACTTTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00059663-exon-scaffold_330-1491911889:37331..38150 | TCONS_00059663-exon-scaffold_330-1491911889:37331..38150 | Clytia hemisphaerica | exon |
TCONS_00059663-exon-scaffold_330-1510915933:37331..38150 | TCONS_00059663-exon-scaffold_330-1510915933:37331..38150 | Clytia hemisphaerica | exon |
TCONS_00059663-exon-scaffold_330-1575043694:37331..38150 | TCONS_00059663-exon-scaffold_330-1575043694:37331..38150 | Clytia hemisphaerica | exon |
TCONS_00059663-exon-scaffold_330-1491911889:38384..39847 | TCONS_00059663-exon-scaffold_330-1491911889:38384..39847 | Clytia hemisphaerica | exon |
TCONS_00059663-exon-scaffold_330-1510915933:38384..39847 | TCONS_00059663-exon-scaffold_330-1510915933:38384..39847 | Clytia hemisphaerica | exon |
TCONS_00059663-exon-scaffold_330-1575043694:38384..39847 | TCONS_00059663-exon-scaffold_330-1575043694:38384..39847 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_330 | supercontig | scaffold_330:37331..39847 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00059663 vs. Swiss-Prot (Human)
Match: FA92A (Protein FAM92A OS=Homo sapiens GN=FAM92A PE=1 SV=2) HSP 1 Score: 127.102 bits (318), Expect = 7.984e-32 Identity = 75/189 (39.68%), Postives = 119/189 (62.96%), Query Frame = 2
Query: 989 YTVRSAKLRDAGDQFSKSLRQYAGTEVPALQQGLGAFAECFAAVQDHRNALVTRLENRVVQGFAVYETRCKQARVDVKQHNTAHTKEVREHKSFENVKSKS-TQQFXXXXXXXXXXXXXXXXNRSANTLKDQISDFERQKTRDLKKVFGEFMLSEMMFYAKALEIYTRAYQELNEIDEEEGIDQLHQSL 1552
Y ++A+LRD D + YA TE P L+ GL FA+ FA +QD+R A V RLE +VV+ Y T K R D+K TA +E ++ E + ++ + + +++AET+ ++AA +A+R++ L++ I++FERQK +D+K +F EF+ EM+F+ KALE+YT AYQ + IDE+E ++ SL
Sbjct: 37 YVRKTARLRDKADLLVNEINAYAATETPHLKLGLMNFADEFAKLQDYRQAEVERLEAKVVEPLKTYGTIVKMKRDDLKATLTARNREAKQLTQLERTRQRNPSDRHVISQAETELQRAAMDASRTSRHLEETINNFERQKMKDIKTIFSEFITIEMLFHGKALEVYTAAYQNIQNIDEDEDLEVFRNSL 225
The following BLAST results are available for this feature:
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