Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059618 ID=TCONS_00059618|Name=TCONS_00059618|organism=Clytia hemisphaerica|type=transcript|length=1504bpRun BLAST on NCBI protein sequence of TCONS_00059618-protein >TCONS_00059618-protein ID=TCONS_00059618-protein|Name=TCONS_00059618-protein|organism=Clytia hemisphaerica|type=polypeptide|length=316bp MAKRKSTEGEQAASKKSKKEDEKVDEVEKENDQKENFSLVTKTKDGRDSNRun BLAST on NCBI transcript from alignment at scaffold_329:750344..757275- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059618 ID=TCONS_00059618|Name=TCONS_00059618|organism=Clytia hemisphaerica|type=transcript|length=6932bp|location=Sequence derived from alignment at scaffold_329:750344..757275- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_329:750344..757275- >TCONS_00059618 ID=TCONS_00059618|Name=TCONS_00059618|organism=Clytia hemisphaerica|type=CDS|length=10461bp|location=Sequence derived from alignment at scaffold_329:750344..757275- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00059618 vs. Swiss-Prot (Human)
Match: APEX1 (DNA-(apurinic or apyrimidinic site) lyase OS=Homo sapiens GN=APEX1 PE=1 SV=2) HSP 1 Score: 309.301 bits (791), Expect = 1.130e-100 Identity = 146/275 (53.09%), Postives = 194/275 (70.55%), Query Frame = 2 Query: 554 TKDGRDSNLKICSWNVAGLRACLKKAGLDYIKEEDADIVCLQETKVTEKEIPGEVTQLDKKVPSILPKKDGYYMYW-YEAEKKGYSGVSLWSKTKPVSIKNGMGKEEHDNEGRLITAEFDKYYVVTSYVPNSGKKLVRLDYRRSWNTDLKDYLNKLKEKKPVVFCGDLNVAHQEIDIANPKANKRNSGFTDEERGDMTELLNE-GYIDSYRSLYPDQEKMYTFWTYMANARAKNVGWRIDYFILSKSLEEDLCDSIMRTKVMGSDHCPIVATFAI 1372 + G+ + LKICSWNV GLRA +KK GLD++KEE DI+CLQETK +E ++P E+ +L P + + YW ++K+GYSGV L S+ P+ + G+G EEHD EGR+I AEFD + +VT+YVPN+G+ LVRL+YR+ W+ + +L L +KP+V CGDLNVAH+EID+ NPK NK+N+GFT +ER ELL DS+R LYP+ YTFWTYM NAR+KNVGWR+DYF+LS SL LCDS +R+K +GSDHCPI A+ Sbjct: 54 SPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQEL----PGL------SHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL 318 The following BLAST results are available for this feature:
BLAST of TCONS_00059618 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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