TCONS_00059600 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059600
Unique NameTCONS_00059600
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2888

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059600 ID=TCONS_00059600|Name=TCONS_00059600|organism=Clytia hemisphaerica|type=transcript|length=2888bp
AAAATATGGAAGAGAATAATTTAAAACACAAAATCATGGATAATTTTGCA
TCTTTGAGCAGGCATCCTGGTTCATCACCCTGCCCAAAACGTTTACCTCC
AAAGCCACCACCAAACTTCAAGAGAAGGAAAATAGAAGCTCCCCAAGGAA
TGCATGGGCAAATGGTAGATGACTTCCTCAAGAAGACGCCATTAGAAGAA
GAGCGAGCAGCTGGGATGACATTACGCTTAACTCATCATCGTATCCAAGG
TACTTTGGAACCCAATGTTGCAGATTTCACTGTGAGAGAAGTGTGTCAGG
AAGCTCATAATAGACCCATGAGGCACATCCATTTCACCAATATGGAGATT
GACAATCAGAAGCATCCAGAGAAACCATGTCCTATTGTTGACCCTGGGTT
AAAAGAGAGCATTGATGATTTGGCATTTGGTGCAGTTGATTATGCGAAAG
AAGTGCGATTCATGAAAAATGATCCCAAACAACGAGCTCTACACTGAAAA
AGACGAAACTGGCAACACTTGGATGGTCGCTAAACATAAAACTTCAGAAG
ACACGATTAAAGAGCAAATAAAACAAAGGAAGTGTCTGAACATTGGGCTA
AGACTGGTTTTATAAACTATTTTGGATTTGATTACTATGGCAGTGGCAAG
GTAAATCTAGGAAAATTCATGCTACACTGTGCTGATACTACTCTGCAAAT
GAAGCTTCCGAATAGAGAAAGACAATTCCATTTGAAAGCTTATCAAGCGG
TCACTTGGAATAAATTTGCTTCCTATAGAATCAAACAATATGGATTACAG
CCAATCATTGGTGATTTGGTTTTAACAAAAGGAAAAGACAGTACTGGAAT
ATCAATCGTCAAATCCATAACTGCTGAGGATATCAACCAAAAACAATACA
CTGTTGAACAAGTAGTTTTACCTTATCCTGGACACGGGTTGAAGTACCCT
GAAAATTTGTGCTTGAATTACATGTCAAACATCTTGCAACAGGATGGGAT
AGAATTGATCAATATCCCACGGCGTAGAGGTGACATGAGTTTGATATGTG
GGTATAGacCCATCATTTCAAAGCCTCAAAATGTAGAATGGGATCTGGTT
TCATACGATGATCCAACTCTTCCATTAATAGAAAACGATTATGAACATCT
TTTCCGATTAGCTGCTCACAATTTTAAATATAGAcagatgaaaattaaat
atgagGAAGCCGTACGCAAGAAGACTTTAAATGGTGCAAGTGAGGCCATG
TCGAAACCAGATAATGAAGAGTCTGGTACTAGTGGTCTCGAATGCAAAGA
AACTGAAGAGAGTGATGAAGACTTAGCCAAAGGTATTGATGTTGACGAGC
TTTACCAAGGAATTGGTTTAGAATCTGAAGAACAACCTTCATCATCTGAT
GGTTTACCAGAAAAACCACCTTCGTTCGAGTTTAGACCTCAACTTGGAGT
TGAAAATGGACTGTACAAAGCTCTTAGATTGAGATTTATGTTAAGCCAGG
AGGCATTTGGTACTTCAGCTTTGAGAGAGATTATGAGTACTTGCCCACCT
TATGATCCTGTCAACGTTTCGCAACCGCCCATACAAAGTTGTACTGCTCA
AACATCGCTGCAGAATCCTATTGCTCCCCTGTTGCAAGTGTCTACGGCTC
AGCCATTGCCTGAAAATCCTCAACCACCATTGCAAAACTATACTGCTCCA
CCATTGCTGATAAATCCTACTTCAACAACACCTCTGCGGAATCCTACCGC
TCCACTAAtagtaaaaaatgctgtcactcAACCGATGCAACAAAGTCTTA
CTGTTCTACCACTACTGCAAAATCCCACTGCTAAACCACTTTTAATTAAT
CCTGCTGCTCAACCACTGGTGCGGCCATTAGTGCGGATTCTTACTGCTCC
GCCAGTCCTTCCCACCCCAAGACTGCTACATAATCCTACTGTTCAACTGG
TTCAACCACTACAGAAAAGCCATAATATTCTACCACTACAGCAAATTCCT
ACCCCTCCACCAAATCTACTAAACCCTATCCAGATTCTTGTCGCTCAACC
ACCTCCGCAAAACGCTCCTGCTCCAACACTGCTGCTAAATCCTACAGCTC
AACCAACTCTACCGAACCCTATCGCTCCACCACCATTGAGAAACCATATC
GCTCCACCATCGCTGCTGAACCCTACCCCTCCACCATCCCTGCAGAATAC
TACCCCTTTACCTCCGCTGCAGAGTTCTACAATTCAACCACTGATGGACA
TTTCTACAACTCAACCACCTCTGCGGAATCCTACCTCTCAACCATCTCTG
CGGAATTTTAACAGGCCAACATTGTCACAAAATCCTAACAGGCCACTATT
TCTACGTAATCCTATCAGACCACCTCTTCTTACAAATCCTAATGGGCCAC
CATTACTACCAAACCCTAATGGGCCACCATTACTACCAAACCCTAATGGG
CCACCATTACTACCAAACCCTAATGGGCCACCATTGCTACCAAATCCTAA
TAGGCCACCATTGCTACTAAATCCTAATGGGCCAGCACTACTACCAAATC
CTAATGGGCCACCACTACTACCAATTCCTAATGGACCACCACTACTACCA
ATTCCTAATGGACCACCACTACTACCAAATCCTAACGGGCCACCACTGCT
ACCTAATCCTAATGGACCTCAACCGCAAAATCTTCCTATTCCTGATGAAA
GAATATATCTTCAGGATAGGTTTAGTGATGAACTAGTAGCACCTATAGGT
TTTAGTCAACCATCATCAAACCCGCCTTCATTAATGGAAATCGAAATAAA
AGATCATTTTTACAAATAATACTTCTGTTGTTATAAAGCCTCTTAATTAT
CTTGGTTGAAAAATCAACCTGTAAATATGTAAACTGCA
Run BLAST on NCBI

protein sequence of TCONS_00059600-protein

>TCONS_00059600-protein ID=TCONS_00059600-protein|Name=TCONS_00059600-protein|organism=Clytia hemisphaerica|type=polypeptide|length=716bp
MLHCADTTLQMKLPNRERQFHLKAYQAVTWNKFASYRIKQYGLQPIIGDL
VLTKGKDSTGISIVKSITAEDINQKQYTVEQVVLPYPGHGLKYPENLCLN
YMSNILQQDGIELINIPRRRGDMSLICGYRPIISKPQNVEWDLVSYDDPT
LPLIENDYEHLFRLAAHNFKYRQMKIKYEEAVRKKTLNGASEAMSKPDNE
ESGTSGLECKETEESDEDLAKGIDVDELYQGIGLESEEQPSSSDGLPEKP
PSFEFRPQLGVENGLYKALRLRFMLSQEAFGTSALREIMSTCPPYDPVNV
SQPPIQSCTAQTSLQNPIAPLLQVSTAQPLPENPQPPLQNYTAPPLLINP
TSTTPLRNPTAPLIVKNAVTQPMQQSLTVLPLLQNPTAKPLLINPAAQPL
VRPLVRILTAPPVLPTPRLLHNPTVQLVQPLQKSHNILPLQQIPTPPPNL
LNPIQILVAQPPPQNAPAPTLLLNPTAQPTLPNPIAPPPLRNHIAPPSLL
NPTPPPSLQNTTPLPPLQSSTIQPLMDISTTQPPLRNPTSQPSLRNFNRP
TLSQNPNRPLFLRNPIRPPLLTNPNGPPLLPNPNGPPLLPNPNGPPLLPN
PNGPPLLPNPNRPPLLLNPNGPALLPNPNGPPLLPIPNGPPLLPIPNGPP
LLPNPNGPPLLPNPNGPQPQNLPIPDERIYLQDRFSDELVAPIGFSQPSS
NPPSLMEIEIKDHFYK
Run BLAST on NCBI

transcript from alignment at scaffold_329:572732..578039-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059600 ID=TCONS_00059600|Name=TCONS_00059600|organism=Clytia hemisphaerica|type=transcript|length=5308bp|location=Sequence derived from alignment at scaffold_329:572732..578039- (Clytia hemisphaerica)
AAAATATGGAAGAGAATAATTTAAAACACAAAATCATGGATAATTTTGCA
TCTTTGAGCAGGCATCCTGGTTCATCACCCTGCCCAAAACGTTTACCTCC
AAAGGTTAAATTTCTATCTAGATTCTATATTTCTTGAACAAGTCTTTTTA
ATTACTAAATGAAAATGTGAAAACCTCAAAAAGCTGTAAGCTTAGTTCGG
GTTTTGATTGATGAATTTTTCATTGTTTGTAACTTTCTTTCACAAACTTT
GAACCTCTGATGTAAGCAAACTTGTAAACTACCTCAGATTTTTGAGTTTT
TATCGGGGTGCAACAACGTCAAACATTTAACAATTGTCTGAGTTTTTTAT
ACTGACACTCTCACAGGTGTATACTTTTATAATTCACTCCTTTTGACATC
CACCCTAAAGCGAACTAAAACCAAACTGTTTGTCAAATTAAGGTTGATAC
TATGTTTCCCAAACTACTTTCAGCCACCACCAAACTTCAAGAGAAGGAAA
ATAGAAGCTCCCCAAGGAATGCATGGGCAAATGGTAGATGACTTCCTCAA
GAAGACGCCATTAGAAGAAGAGCGAGCAGCTGGGATGACATTACGCTTAA
CTCATCATCGTATCCAAGGTACTTTGGAACCCAATGTTGCAGATTTCACT
GTGAGAGAAGTGTGTCAGGAAGCTCATAATAGACCCATGAGGCACATCCA
TTTCACCAATATGGAGATTGACAATCAGAAGCATCCAGAGAAACCATGTC
CTATTGTTGACCCTGGGTTAAAAGAGAGCATTGATGATTTGGCATTTGGT
GCAGTTGATTATGCGAAAGAAGTGCGATTCATGAAAAATGATCCCAAACA
ACGGTATTTGTATTGGAATTATTTTGAAAAGAAATTAACTAGAAAGTAAC
TAATTAGTTTTCATTGTGTTTCATGTTTGCGCCTGCCATTTTATACTAGC
CAGAAATAACGTTATCAAAATGTCAAAACATGAGTTGTTTTTATGAAATA
TTTTTTAATTTTGGTATTTAATATTACTGTATACAAACTATAGGCGTACA
AAGTTTCGCGATCAGAAACTTTCGCGATTTTCACGAATTTTGGCCTTTTT
CGCAAAAGTAAATGTCTTTGAGAATTCTTAACAGGGCAATTCGCGAAAGT
TTATGCTTGCGAAAAATTCTCAAAAAAAGTGGAAATCTATAAAACCTTGA
AATCGTAATAAATATCAAAATTTCCGCATTATCCTTTAATGCCTGTTTAA
AGTCGAAGAGCAACCATTTTTATCAGATTTAAGGAATATTTTTCATTTTT
AAGGCAATCTTCATTCGAAAATCCTCATTTTTATCCAACGATTCGCGAAA
GTTTATGCTCGCGAAAAACATTTTTTAATCAAATTTGCGAAAGTAAATGT
CGTGAATTTCGTGATTTTTCGTCCTCGCGAAAGTTTCTGATCGCGAAAGT
TTGTACGCCAAAAGTATTTGTAACAAGTTTCTTTCACAATAGAGCTCTAC
ACTGAAAAAGACGAAACTGGCAACACTTGGATGGTCGCTAAACATAAAAC
TTCAGAAGACACGATTAAAGAGCAAATAAAACAAGTATCAAAGCTATACT
GTCACTTTGTGATATTCAGACAGAATGTTGACCCTTATGACATTGTAACT
ACACTCTGTCGAAAATTGCATTTTCAAAGACATGATTTTTCTTTACCCAC
AAAATTGAATTATCAAAATTCAACCATGGTACAGAAAGTCTCCGTTAGAT
TCAAACCAAGCGATTCTAGAGACCGCTTACTGCAATTGAACAATGAAGTA
CAAAATTTTAAAATTGGGAATTGTATTTTGAAAAAACATGGTAGATCTGG
TTCTTTAATTGGGAATCATTTTGAAGTAGTTATTCGCAATGTTTCCAACC
CTTATGACTATTTTATAGAGGAAGTGTCTGAACATTGGGCTAAGACTGGT
TTTATAAACTATTTTGGATTTGATTACTATGGCAGTGGCAAGGTAAATCT
AGGTATAGTATGTGTCATTTTTCATTTTTTTCGTGATTTTAATTTAAAAA
TTGTTTTATTTCCACCATTTGGTAGAAAGCTAGGAAAAAGGGAGCTTTCA
GGTCGCCCTCCAGCGCCCTCAAATGCAGTCTCATACTTACTTAGTTGACA
GTCATTGAAATAGTTTAAATAGATTGAAAAAGCAGCTGTTTTTAAATTCC
TTTTTGTTTTACTTTCAGGAAAATTCATGCTACACTGTGCTGATACTACT
CTGCAAATGAAGCTTCCGAATAGAGAAAGACAATTCCATTTGAAAGCTTA
TCAAGCGGTCACTTGGAATAAATTTGCTTCCTATAGAATCAAAGTAAAGT
GTTGTCTTTGAAATATTTTTTATAATAGTTTACTTTGGATGAATGTAGTA
TTCTTAAAAATCAACCTAAATTTAGAATTTTTTTTGGACAAATTTCTTTC
ATTTTCCTACAGCTAGGGATTTTTCAAATTTTTCTTGCAGGTTCAAATTT
TCGCGGTTTTGCCAAAAAAACACAAAAAACGCTAAAATTGATTCTCGCAA
AAATTAGTTCCAATAAGTAAGTTTTTCCACGTTTTCTCATGGCTTTTGTT
GATTCTAATCAGTTTTAAATGATTCGAATCAGTCACAGAGCTAATAACTT
AGAACATTTCATTTTTACACTTCTTGGTCTTCTTTTCAGCAATATGGATT
ACAGCCAATCATTGGTGATTTGGTTTTAACAAAAGGAAAAGGTATAACCT
AACAATATTTATCTTATTTTTGCCATAAGCTTTCCCTTTTTTATCCTGGC
AATATAAATAACATTAATCTAGTTTGTGGACGTTTGACTGCTTGAATACA
AAGGAAGTTACTTTAATTAGATAAGAAGGATACAAGTGCTTATGTAAAAC
CTGGNGACGTTTGACTGCTTGAATACAAAGGAAGTTTTACTTTAATTTTT
TTTTTTACTTTTAATTATTTTAACGTAAAACTTTGAGGATTAACAATATT
TGAAAACTTCTCATCCACAGACAGTACTGGAATATCAATCGTCAAATCCA
TAACTGCTGAGGATATCAACCAAAAACAATACACTGTTGAACAAGTAGTT
TTACCTTATCCTGGACACGGGTTGAAGTACCCTGAAAATTTGTGCTTGAA
TTACATGTCAAACATCTTGCAACAGGATGGGATAGAATTGATCAATATCC
CACGGCGTAGAGGTGACATGAGTTTGATATGTGGGTATAGGTAAGTATTT
CTTCTGACTTTTGAACTGATCCATTTTCACCAAAAAAAACTCAGGCCTTT
GAAAAAAAACTTTCATCTGCAAAAAAGAAATTTCACTTGCCAAGCTAATG
AGTTTTCAATCTTTGAAAGCCAACCTAGCCTTCATTTAGTTTTCAATTTG
CCTTGTAAATGAAGTTTTTTTATCTTTTTTGAAAGTAATTGGCTTCATCT
TTCTGATTATATTTATTTCTTTTTCAGACCCATCATTTCAAAGCCTCAAA
ATGTAGAATGGGATCTGGTTTCATACGATGATCCAACTCTTCCATTAATA
GAAAACGATTATGAACATCTTTTCCGATTAGCTGCTCACAATTTTAAATA
TAGACAGATGAAAATTAAATATGAGGAAGCCGTACGCAAGAAGACTTTAA
ATGGTGCAAGTGAGGCCATGTCGAAACCAGATAATGAAGAGTCTGGTACT
AGTGGTCTCGAATGCAAAGAAACTGAAGAGAGTGATGAAGACTTAGCCAA
AGGTATTGATGTTGACGAGCTTTACCAAGGAATTGGTTTAGAATCTGAAG
AACAACCTTCATCATCTGATGGTTTACCAGAAAAACCACCTTCGTTCGAG
TTTAGACCTCAACTTGGAGTTGAAAATGGACTGTACAAAGCTCTTAGATT
GAGATTTATGTTAAGCCAGGAGGCATTTGGTACTTCAGCTTTGAGAGAGA
TTATGAGTACTTGCCCACCTTATGATCCTGTCAACGTTTCGCAACCGCCC
ATACAAAGTTGTACTGCTCAAACATCGCTGCAGAATCCTATTGCTCCCCT
GTTGCAAGTGTCTACGGCTCAGCCATTGCCTGAAAATCCTCAACCACCAT
TGCAAAACTATACTGCTCCACCATTGCTGATAAATCCTACTTCAACAACA
CCTCTGCGGAATCCTACCGCTCCACTAATAGTAAAAAATGCTGTCACTCA
ACCGATGCAACAAAGTCTTACTGTTCTACCACTACTGCAAAATCCCACTG
CTAAACCACTTTTAATTAATCCTGCTGCTCAACCACTGGTGCGGCCATTA
GTGCGGATTCTTACTGCTCCGCCAGTCCTTCCCACCCCAAGACTGCTACA
TAATCCTACTGTTCAACTGGTTCAACCACTACAGAAAAGCCATAATATTC
TACCACTACAGCAAATTCCTACCCCTCCACCAAATCTACTAAACCCTATC
CAGATTCTTGTCGCTCAACCACCTCCGCAAAACGCTCCTGCTCCAACACT
GCTGCTAAATCCTACAGCTCAACCAACTCTACCGAACCCTATCGCTCCAC
CACCATTGAGAAACCATATCGCTCCACCATCGCTGCTGAACCCTACCCCT
CCACCATCCCTGCAGAATACTACCCCTTTACCTCCGCTGCAGAGTTCTAC
AATTCAACCACTGATGGACATTTCTACAACTCAACCACCTCTGCGGAATC
CTACCTCTCAACCATCTCTGCGGAATTTTAACAGGCCAACATTGTCACAA
AATCCTAACAGGCCACTATTTCTACGTAATCCTATCAGACCACCTCTTCT
TACAAATCCTAATGGGCCACCATTACTACCAAACCCTAATGGGCCACCAT
TACTACCAAACCCTAATGGGCCACCATTACTACCAAACCCTAATGGGCCA
CCATTGCTACCAAATCCTAATAGGCCACCATTGCTACTAAATCCTAATGG
GCCAGCACTACTACCAAATCCTAATGGGCCACCACTACTACCAATTCCTA
ATGGACCACCACTACTACCAATTCCTAATGGACCACCACTACTACCAAAT
CCTAACGGGCCACCACTGCTACCTAATCCTAATGGACCTCAACCGCAAAA
TCTTCCTATTCCTGATGAAAGAATATATCTTCAGGATAGGTTTAGTGATG
AACTAGTAGCACCTATAGGTTTTAGTCAACCATCATCAAACCCGCCTTCA
TTAATGGAAATCGAAATAAAAGATCATTTTTACAAATAATACTTCTGTTG
TTATAAAGCCTCTTAATTATCTTGGTTGAAAAATCAACCTGTAAATATGT
AAACTGCA

Coding sequence (CDS) from alignment at scaffold_329:572732..578039-

>TCONS_00059600 ID=TCONS_00059600|Name=TCONS_00059600|organism=Clytia hemisphaerica|type=CDS|length=8604bp|location=Sequence derived from alignment at scaffold_329:572732..578039- (Clytia hemisphaerica)
ACCCATCATTTCAAAGCCTCAAAATGTAGAATGGGATCTGGTTTCATACG
ATGATCCAACTCTTCCATTAATAGAAAACGATTATGAACATCTTTTCCGA
TTAGCTGCTCACAATTTTAAATATAGACAGATGAAAATTAAATATGAGGA
AGCCGTACGCAAGAAGACTTTAAATGGTGCAAGTGAGGCCATGTCGAAAC
CAGATAATGAAGAGTCTGGTACTAGTGGTCTCGAATGCAAAGAAACTGAA
GAGAGTGATGAAGACTTAGCCAAAGGTATTGATGTTGACGAGCTTTACCA
AGGAATTGGTTTAGAATCTGAAGAACAACCTTCATCATCTGATGGTTTAC
CAGAAAAACCACCTTCGTTCGAGTTTAGACCTCAACTTGGAGTTGAAAAT
GGACTGTACAAAGCTCTTAGATTGAGATTTATGTTAAGCCAGGAGGCATT
TGGTACTTCAGCTTTGAGAGAGATTATGAGTACTTGCCCACCTTATGATC
CTGTCAACGTTTCGCAACCGCCCATACAAAGTTGTACTGCTCAAACATCG
CTGCAGAATCCTATTGCTCCCCTGTTGCAAGTGTCTACGGCTCAGCCATT
GCCTGAAAATCCTCAACCACCATTGCAAAACTATACTGCTCCACCATTGC
TGATAAATCCTACTTCAACAACACCTCTGCGGAATCCTACCGCTCCACTA
ATAGTAAAAAATGCTGTCACTCAACCGATGCAACAAAGTCTTACTGTTCT
ACCACTACTGCAAAATCCCACTGCTAAACCACTTTTAATTAATCCTGCTG
CTCAACCACTGGTGCGGCCATTAGTGCGGATTCTTACTGCTCCGCCAGTC
CTTCCCACCCCAAGACTGCTACATAATCCTACTGTTCAACTGGTTCAACC
ACTACAGAAAAGCCATAATATTCTACCACTACAGCAAATTCCTACCCCTC
CACCAAATCTACTAAACCCTATCCAGATTCTTGTCGCTCAACCACCTCCG
CAAAACGCTCCTGCTCCAACACTGCTGCTAAATCCTACAGCTCAACCAAC
TCTACCGAACCCTATCGCTCCACCACCATTGAGAAACCATATCGCTCCAC
CATCGCTGCTGAACCCTACCCCTCCACCATCCCTGCAGAATACTACCCCT
TTACCTCCGCTGCAGAGTTCTACAATTCAACCACTGATGGACATTTCTAC
AACTCAACCACCTCTGCGGAATCCTACCTCTCAACCATCTCTGCGGAATT
TTAACAGGCCAACATTGTCACAAAATCCTAACAGGCCACTATTTCTACGT
AATCCTATCAGACCACCTCTTCTTACAAATCCTAATGGGCCACCATTACT
ACCAAACCCTAATGGGCCACCATTACTACCAAACCCTAATGGGCCACCAT
TACTACCAAACCCTAATGGGCCACCATTGCTACCAAATCCTAATAGGCCA
CCATTGCTACTAAATCCTAATGGGCCAGCACTACTACCAAATCCTAATGG
GCCACCACTACTACCAATTCCTAATGGACCACCACTACTACCAATTCCTA
ATGGACCACCACTACTACCAAATCCTAACGGGCCACCACTGCTACCTAAT
CCTAATGGACCTCAACCGCAAAATCTTCCTATTCCTGATGAAAGAATATA
TCTTCAGGATAGGTTTAGTGATGAACTAGTAGCACCTATAGGTTTTAGTC
AACCATCATCAAACCCGCCTTCATTAATGGAAATCGAAATAAAAGATCAT
TTTTACAAATAAACAGTACTGGAATATCAATCGTCAAATCCATAACTGCT
GAGGATATCAACCAAAAACAATACACTGTTGAACAAGTAGTTTTACCTTA
TCCTGGACACGGGTTGAAGTACCCTGAAAATTTGTGCTTGAATTACATGT
CAAACATCTTGCAACAGGATGGGATAGAATTGATCAATATCCCACGGCGT
AGAGGTGACATGAGTTTGATATGTGGGTATAGCAATATGGATTACAGCCA
ATCATTGGTGATTTGGTTTTAACAAAAGGAAAAGATGCTACACTGTGCTG
ATACTACTCTGCAAATGAAGCTTCCGAATAGAGAAAGACAATTCCATTTG
AAAGCTTATCAAGCGGTCACTTGGAATAAATTTGCTTCCTATAGAATCAA
AACCCATCATTTCAAAGCCTCAAAATGTAGAATGGGATCTGGTTTCATAC
GATGATCCAACTCTTCCATTAATAGAAAACGATTATGAACATCTTTTCCG
ATTAGCTGCTCACAATTTTAAATATAGACAGATGAAAATTAAATATGAGG
AAGCCGTACGCAAGAAGACTTTAAATGGTGCAAGTGAGGCCATGTCGAAA
CCAGATAATGAAGAGTCTGGTACTAGTGGTCTCGAATGCAAAGAAACTGA
AGAGAGTGATGAAGACTTAGCCAAAGGTATTGATGTTGACGAGCTTTACC
AAGGAATTGGTTTAGAATCTGAAGAACAACCTTCATCATCTGATGGTTTA
CCAGAAAAACCACCTTCGTTCGAGTTTAGACCTCAACTTGGAGTTGAAAA
TGGACTGTACAAAGCTCTTAGATTGAGATTTATGTTAAGCCAGGAGGCAT
TTGGTACTTCAGCTTTGAGAGAGATTATGAGTACTTGCCCACCTTATGAT
CCTGTCAACGTTTCGCAACCGCCCATACAAAGTTGTACTGCTCAAACATC
GCTGCAGAATCCTATTGCTCCCCTGTTGCAAGTGTCTACGGCTCAGCCAT
TGCCTGAAAATCCTCAACCACCATTGCAAAACTATACTGCTCCACCATTG
CTGATAAATCCTACTTCAACAACACCTCTGCGGAATCCTACCGCTCCACT
AATAGTAAAAAATGCTGTCACTCAACCGATGCAACAAAGTCTTACTGTTC
TACCACTACTGCAAAATCCCACTGCTAAACCACTTTTAATTAATCCTGCT
GCTCAACCACTGGTGCGGCCATTAGTGCGGATTCTTACTGCTCCGCCAGT
CCTTCCCACCCCAAGACTGCTACATAATCCTACTGTTCAACTGGTTCAAC
CACTACAGAAAAGCCATAATATTCTACCACTACAGCAAATTCCTACCCCT
CCACCAAATCTACTAAACCCTATCCAGATTCTTGTCGCTCAACCACCTCC
GCAAAACGCTCCTGCTCCAACACTGCTGCTAAATCCTACAGCTCAACCAA
CTCTACCGAACCCTATCGCTCCACCACCATTGAGAAACCATATCGCTCCA
CCATCGCTGCTGAACCCTACCCCTCCACCATCCCTGCAGAATACTACCCC
TTTACCTCCGCTGCAGAGTTCTACAATTCAACCACTGATGGACATTTCTA
CAACTCAACCACCTCTGCGGAATCCTACCTCTCAACCATCTCTGCGGAAT
TTTAACAGGCCAACATTGTCACAAAATCCTAACAGGCCACTATTTCTACG
TAATCCTATCAGACCACCTCTTCTTACAAATCCTAATGGGCCACCATTAC
TACCAAACCCTAATGGGCCACCATTACTACCAAACCCTAATGGGCCACCA
TTACTACCAAACCCTAATGGGCCACCATTGCTACCAAATCCTAATAGGCC
ACCATTGCTACTAAATCCTAATGGGCCAGCACTACTACCAAATCCTAATG
GGCCACCACTACTACCAATTCCTAATGGACCACCACTACTACCAATTCCT
AATGGACCACCACTACTACCAAATCCTAACGGGCCACCACTGCTACCTAA
TCCTAATGGACCTCAACCGCAAAATCTTCCTATTCCTGATGAAAGAATAT
ATCTTCAGGATAGGTTTAGTGATGAACTAGTAGCACCTATAGGTTTTAGT
CAACCATCATCAAACCCGCCTTCATTAATGGAAATCGAAATAAAAGATCA
TTTTTACAAATAAACAGTACTGGAATATCAATCGTCAAATCCATAACTGC
TGAGGATATCAACCAAAAACAATACACTGTTGAACAAGTAGTTTTACCTT
ATCCTGGACACGGGTTGAAGTACCCTGAAAATTTGTGCTTGAATTACATG
TCAAACATCTTGCAACAGGATGGGATAGAATTGATCAATATCCCACGGCG
TAGAGGTGACATGAGTTTGATATGTGGGTATAGCAATATGGATTACAGCC
AATCATTGGTGATTTGGTTTTAACAAAAGGAAAAGATGCTACACTGTGCT
GATACTACTCTGCAAATGAAGCTTCCGAATAGAGAAAGACAATTCCATTT
GAAAGCTTATCAAGCGGTCACTTGGAATAAATTTGCTTCCTATAGAATCA
AAACCCATCATTTCAAAGCCTCAAAATGTAGAATGGGATCTGGTTTCATA
CGATGATCCAACTCTTCCATTAATAGAAAACGATTATGAACATCTTTTCC
GATTAGCTGCTCACAATTTTAAATATAGACAGATGAAAATTAAATATGAG
GAAGCCGTACGCAAGAAGACTTTAAATGGTGCAAGTGAGGCCATGTCGAA
ACCAGATAATGAAGAGTCTGGTACTAGTGGTCTCGAATGCAAAGAAACTG
AAGAGAGTGATGAAGACTTAGCCAAAGGTATTGATGTTGACGAGCTTTAC
CAAGGAATTGGTTTAGAATCTGAAGAACAACCTTCATCATCTGATGGTTT
ACCAGAAAAACCACCTTCGTTCGAGTTTAGACCTCAACTTGGAGTTGAAA
ATGGACTGTACAAAGCTCTTAGATTGAGATTTATGTTAAGCCAGGAGGCA
TTTGGTACTTCAGCTTTGAGAGAGATTATGAGTACTTGCCCACCTTATGA
TCCTGTCAACGTTTCGCAACCGCCCATACAAAGTTGTACTGCTCAAACAT
CGCTGCAGAATCCTATTGCTCCCCTGTTGCAAGTGTCTACGGCTCAGCCA
TTGCCTGAAAATCCTCAACCACCATTGCAAAACTATACTGCTCCACCATT
GCTGATAAATCCTACTTCAACAACACCTCTGCGGAATCCTACCGCTCCAC
TAATAGTAAAAAATGCTGTCACTCAACCGATGCAACAAAGTCTTACTGTT
CTACCACTACTGCAAAATCCCACTGCTAAACCACTTTTAATTAATCCTGC
TGCTCAACCACTGGTGCGGCCATTAGTGCGGATTCTTACTGCTCCGCCAG
TCCTTCCCACCCCAAGACTGCTACATAATCCTACTGTTCAACTGGTTCAA
CCACTACAGAAAAGCCATAATATTCTACCACTACAGCAAATTCCTACCCC
TCCACCAAATCTACTAAACCCTATCCAGATTCTTGTCGCTCAACCACCTC
CGCAAAACGCTCCTGCTCCAACACTGCTGCTAAATCCTACAGCTCAACCA
ACTCTACCGAACCCTATCGCTCCACCACCATTGAGAAACCATATCGCTCC
ACCATCGCTGCTGAACCCTACCCCTCCACCATCCCTGCAGAATACTACCC
CTTTACCTCCGCTGCAGAGTTCTACAATTCAACCACTGATGGACATTTCT
ACAACTCAACCACCTCTGCGGAATCCTACCTCTCAACCATCTCTGCGGAA
TTTTAACAGGCCAACATTGTCACAAAATCCTAACAGGCCACTATTTCTAC
GTAATCCTATCAGACCACCTCTTCTTACAAATCCTAATGGGCCACCATTA
CTACCAAACCCTAATGGGCCACCATTACTACCAAACCCTAATGGGCCACC
ATTACTACCAAACCCTAATGGGCCACCATTGCTACCAAATCCTAATAGGC
CACCATTGCTACTAAATCCTAATGGGCCAGCACTACTACCAAATCCTAAT
GGGCCACCACTACTACCAATTCCTAATGGACCACCACTACTACCAATTCC
TAATGGACCACCACTACTACCAAATCCTAACGGGCCACCACTGCTACCTA
ATCCTAATGGACCTCAACCGCAAAATCTTCCTATTCCTGATGAAAGAATA
TATCTTCAGGATAGGTTTAGTGATGAACTAGTAGCACCTATAGGTTTTAG
TCAACCATCATCAAACCCGCCTTCATTAATGGAAATCGAAATAAAAGATC
ATTTTTACAAATAAACAGTACTGGAATATCAATCGTCAAATCCATAACTG
CTGAGGATATCAACCAAAAACAATACACTGTTGAACAAGTAGTTTTACCT
TATCCTGGACACGGGTTGAAGTACCCTGAAAATTTGTGCTTGAATTACAT
GTCAAACATCTTGCAACAGGATGGGATAGAATTGATCAATATCCCACGGC
GTAGAGGTGACATGAGTTTGATATGTGGGTATAGCAATATGGATTACAGC
CAATCATTGGTGATTTGGTTTTAACAAAAGGAAAAGATGCTACACTGTGC
TGATACTACTCTGCAAATGAAGCTTCCGAATAGAGAAAGACAATTCCATT
TGAAAGCTTATCAAGCGGTCACTTGGAATAAATTTGCTTCCTATAGAATC
AAAACCCATCATTTCAAAGCCTCAAAATGTAGAATGGGATCTGGTTTCAT
ACGATGATCCAACTCTTCCATTAATAGAAAACGATTATGAACATCTTTTC
CGATTAGCTGCTCACAATTTTAAATATAGACAGATGAAAATTAAATATGA
GGAAGCCGTACGCAAGAAGACTTTAAATGGTGCAAGTGAGGCCATGTCGA
AACCAGATAATGAAGAGTCTGGTACTAGTGGTCTCGAATGCAAAGAAACT
GAAGAGAGTGATGAAGACTTAGCCAAAGGTATTGATGTTGACGAGCTTTA
CCAAGGAATTGGTTTAGAATCTGAAGAACAACCTTCATCATCTGATGGTT
TACCAGAAAAACCACCTTCGTTCGAGTTTAGACCTCAACTTGGAGTTGAA
AATGGACTGTACAAAGCTCTTAGATTGAGATTTATGTTAAGCCAGGAGGC
ATTTGGTACTTCAGCTTTGAGAGAGATTATGAGTACTTGCCCACCTTATG
ATCCTGTCAACGTTTCGCAACCGCCCATACAAAGTTGTACTGCTCAAACA
TCGCTGCAGAATCCTATTGCTCCCCTGTTGCAAGTGTCTACGGCTCAGCC
ATTGCCTGAAAATCCTCAACCACCATTGCAAAACTATACTGCTCCACCAT
TGCTGATAAATCCTACTTCAACAACACCTCTGCGGAATCCTACCGCTCCA
CTAATAGTAAAAAATGCTGTCACTCAACCGATGCAACAAAGTCTTACTGT
TCTACCACTACTGCAAAATCCCACTGCTAAACCACTTTTAATTAATCCTG
CTGCTCAACCACTGGTGCGGCCATTAGTGCGGATTCTTACTGCTCCGCCA
GTCCTTCCCACCCCAAGACTGCTACATAATCCTACTGTTCAACTGGTTCA
ACCACTACAGAAAAGCCATAATATTCTACCACTACAGCAAATTCCTACCC
CTCCACCAAATCTACTAAACCCTATCCAGATTCTTGTCGCTCAACCACCT
CCGCAAAACGCTCCTGCTCCAACACTGCTGCTAAATCCTACAGCTCAACC
AACTCTACCGAACCCTATCGCTCCACCACCATTGAGAAACCATATCGCTC
CACCATCGCTGCTGAACCCTACCCCTCCACCATCCCTGCAGAATACTACC
CCTTTACCTCCGCTGCAGAGTTCTACAATTCAACCACTGATGGACATTTC
TACAACTCAACCACCTCTGCGGAATCCTACCTCTCAACCATCTCTGCGGA
ATTTTAACAGGCCAACATTGTCACAAAATCCTAACAGGCCACTATTTCTA
CGTAATCCTATCAGACCACCTCTTCTTACAAATCCTAATGGGCCACCATT
ACTACCAAACCCTAATGGGCCACCATTACTACCAAACCCTAATGGGCCAC
CATTACTACCAAACCCTAATGGGCCACCATTGCTACCAAATCCTAATAGG
CCACCATTGCTACTAAATCCTAATGGGCCAGCACTACTACCAAATCCTAA
TGGGCCACCACTACTACCAATTCCTAATGGACCACCACTACTACCAATTC
CTAATGGACCACCACTACTACCAAATCCTAACGGGCCACCACTGCTACCT
AATCCTAATGGACCTCAACCGCAAAATCTTCCTATTCCTGATGAAAGAAT
ATATCTTCAGGATAGGTTTAGTGATGAACTAGTAGCACCTATAGGTTTTA
GTCAACCATCATCAAACCCGCCTTCATTAATGGAAATCGAAATAAAAGAT
CATTTTTACAAATAAACAGTACTGGAATATCAATCGTCAAATCCATAACT
GCTGAGGATATCAACCAAAAACAATACACTGTTGAACAAGTAGTTTTACC
TTATCCTGGACACGGGTTGAAGTACCCTGAAAATTTGTGCTTGAATTACA
TGTCAAACATCTTGCAACAGGATGGGATAGAATTGATCAATATCCCACGG
CGTAGAGGTGACATGAGTTTGATATGTGGGTATAGCAATATGGATTACAG
CCAATCATTGGTGATTTGGTTTTAACAAAAGGAAAAGATGCTACACTGTG
CTGATACTACTCTGCAAATGAAGCTTCCGAATAGAGAAAGACAATTCCAT
TTGAAAGCTTATCAAGCGGTCACTTGGAATAAATTTGCTTCCTATAGAAT
CAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037489XLOC_037489Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059600-exon-scaffold_329-1575043694:577936..578039TCONS_00059600-exon-scaffold_329-1575043694:577936..578039Clytia hemisphaericaexon
TCONS_00059600-exon-scaffold_329-1575043694:577187..577566TCONS_00059600-exon-scaffold_329-1575043694:577187..577566Clytia hemisphaericaexon
TCONS_00059600-exon-scaffold_329-1575043694:576456..576547TCONS_00059600-exon-scaffold_329-1575043694:576456..576547Clytia hemisphaericaexon
TCONS_00059600-exon-scaffold_329-1575043694:576038..576121TCONS_00059600-exon-scaffold_329-1575043694:576038..576121Clytia hemisphaericaexon
TCONS_00059600-exon-scaffold_329-1575043694:575697..575821TCONS_00059600-exon-scaffold_329-1575043694:575697..575821Clytia hemisphaericaexon
TCONS_00059600-exon-scaffold_329-1575043694:575299..575350TCONS_00059600-exon-scaffold_329-1575043694:575299..575350Clytia hemisphaericaexon
TCONS_00059600-exon-scaffold_329-1575043694:574800..575019TCONS_00059600-exon-scaffold_329-1575043694:574800..575019Clytia hemisphaericaexon
TCONS_00059600-exon-scaffold_329-1575043694:572732..574562TCONS_00059600-exon-scaffold_329-1575043694:572732..574562Clytia hemisphaericaexon
TCONS_00059600-exon-scaffold_329-1510915933:577936..578039TCONS_00059600-exon-scaffold_329-1510915933:577936..578039Clytia hemisphaericaexon
TCONS_00059600-exon-scaffold_329-1510915933:577187..577566TCONS_00059600-exon-scaffold_329-1510915933:577187..577566Clytia hemisphaericaexon
TCONS_00059600-exon-scaffold_329-1510915933:576456..576547TCONS_00059600-exon-scaffold_329-1510915933:576456..576547Clytia hemisphaericaexon
TCONS_00059600-exon-scaffold_329-1510915933:576038..576121TCONS_00059600-exon-scaffold_329-1510915933:576038..576121Clytia hemisphaericaexon
TCONS_00059600-exon-scaffold_329-1510915933:575697..575821TCONS_00059600-exon-scaffold_329-1510915933:575697..575821Clytia hemisphaericaexon
TCONS_00059600-exon-scaffold_329-1510915933:575299..575350TCONS_00059600-exon-scaffold_329-1510915933:575299..575350Clytia hemisphaericaexon
TCONS_00059600-exon-scaffold_329-1510915933:574800..575019TCONS_00059600-exon-scaffold_329-1510915933:574800..575019Clytia hemisphaericaexon
TCONS_00059600-exon-scaffold_329-1510915933:572732..574562TCONS_00059600-exon-scaffold_329-1510915933:572732..574562Clytia hemisphaericaexon
TCONS_00059600-exon-scaffold_329-1491911889:577936..578039TCONS_00059600-exon-scaffold_329-1491911889:577936..578039Clytia hemisphaericaexon
TCONS_00059600-exon-scaffold_329-1491911889:577187..577566TCONS_00059600-exon-scaffold_329-1491911889:577187..577566Clytia hemisphaericaexon
TCONS_00059600-exon-scaffold_329-1491911889:576456..576547TCONS_00059600-exon-scaffold_329-1491911889:576456..576547Clytia hemisphaericaexon
TCONS_00059600-exon-scaffold_329-1491911889:576038..576121TCONS_00059600-exon-scaffold_329-1491911889:576038..576121Clytia hemisphaericaexon
TCONS_00059600-exon-scaffold_329-1491911889:575697..575821TCONS_00059600-exon-scaffold_329-1491911889:575697..575821Clytia hemisphaericaexon
TCONS_00059600-exon-scaffold_329-1491911889:575299..575350TCONS_00059600-exon-scaffold_329-1491911889:575299..575350Clytia hemisphaericaexon
TCONS_00059600-exon-scaffold_329-1491911889:574800..575019TCONS_00059600-exon-scaffold_329-1491911889:574800..575019Clytia hemisphaericaexon
TCONS_00059600-exon-scaffold_329-1491911889:572732..574562TCONS_00059600-exon-scaffold_329-1491911889:572732..574562Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059600-proteinTCONS_00059600-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_329supercontigscaffold_329:572732..578039 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	2.41187e-09	1.15604e-09	0	2.85593e-07	1.13782	0	0.743832	4.03778e-10	0.856009	0	1.11781	0.58693	0.763019	0.849044	1.08384	0.0856479	1.09095	0.514003	0	0.483531	0.128052	0	1.11346	1.2228	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001656PsdUridine_synth_TruD
IPR011760PsdUridine_synth_TruD_insert
IPR020103PsdUridine_synth_cat_dom
Vocabulary: Biological Process
TermDefinition
GO:0001522pseudouridine synthesis
GO:0009451RNA modification
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0009982pseudouridine synthase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001522 pseudouridine synthesis
biological_process GO:0009451 RNA modification
molecular_function GO:0009982 pseudouridine synthase activity
molecular_function GO:0003723 RNA binding
Blast
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BLAST of TCONS_00059600 vs. Swiss-Prot (Human)
Match: PUS7 (Pseudouridylate synthase 7 homolog OS=Homo sapiens GN=PUS7 PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.445e-25
Identity = 61/170 (35.88%), Postives = 95/170 (55.88%), Query Frame = 3 
Query:  705 LPNRERQFHLKAYQAVTWNKFASYRIKQYGLQPIIGDLVLTKGKDSTGISIVKSITAEDINQKQYTVEQVVLPYPGHGLKYPENLCLNYMSNILQQDGIELINIPRRRGDMSLICGYRPIISKPQNVEWDLVSYDDPTLPLIENDYEHLFR----LAAHNFKYRQMKIKY 1202
            +P   R  ++ +YQ+  WN   S RI+ YGL+P+ GDLVL KG  +T       I  +D+N   Y++  VV+P PG  + YP++        +L  D +++ N+  +  D SL   YR II +PQNV W++V+YDDP +PL   D ++L      + A   KYR +K+ +
Sbjct:  467 IPRNNRLMYIHSYQSYVWNNMVSKRIEDYGLKPVPGDLVL-KGATAT------YIEEDDVNN--YSIHDVVMPLPGFDVIYPKHKIQEAYREMLTADNLDIDNMRHKIRDYSLSGAYRKIIIRPQNVSWEVVAYDDPKIPLFNTDVDNLEGKTPPVFASEGKYRALKMDF 627
The following BLAST results are available for this feature:
BLAST of TCONS_00059600 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PUS72.445e-2535.88Pseudouridylate synthase 7 homolog OS=Homo sapiens... [more]
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