TCONS_00059600-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00059600-protein
Unique NameTCONS_00059600-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length716

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00059600-protein ID=TCONS_00059600-protein|Name=TCONS_00059600-protein|organism=Clytia hemisphaerica|type=polypeptide|length=716bp
MLHCADTTLQMKLPNRERQFHLKAYQAVTWNKFASYRIKQYGLQPIIGDL
VLTKGKDSTGISIVKSITAEDINQKQYTVEQVVLPYPGHGLKYPENLCLN
YMSNILQQDGIELINIPRRRGDMSLICGYRPIISKPQNVEWDLVSYDDPT
LPLIENDYEHLFRLAAHNFKYRQMKIKYEEAVRKKTLNGASEAMSKPDNE
ESGTSGLECKETEESDEDLAKGIDVDELYQGIGLESEEQPSSSDGLPEKP
PSFEFRPQLGVENGLYKALRLRFMLSQEAFGTSALREIMSTCPPYDPVNV
SQPPIQSCTAQTSLQNPIAPLLQVSTAQPLPENPQPPLQNYTAPPLLINP
TSTTPLRNPTAPLIVKNAVTQPMQQSLTVLPLLQNPTAKPLLINPAAQPL
VRPLVRILTAPPVLPTPRLLHNPTVQLVQPLQKSHNILPLQQIPTPPPNL
LNPIQILVAQPPPQNAPAPTLLLNPTAQPTLPNPIAPPPLRNHIAPPSLL
NPTPPPSLQNTTPLPPLQSSTIQPLMDISTTQPPLRNPTSQPSLRNFNRP
TLSQNPNRPLFLRNPIRPPLLTNPNGPPLLPNPNGPPLLPNPNGPPLLPN
PNGPPLLPNPNRPPLLLNPNGPALLPNPNGPPLLPIPNGPPLLPIPNGPP
LLPNPNGPPLLPNPNGPQPQNLPIPDERIYLQDRFSDELVAPIGFSQPSS
NPPSLMEIEIKDHFYK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037489XLOC_037489Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00059600TCONS_00059600Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001656PsdUridine_synth_TruD
IPR011760PsdUridine_synth_TruD_insert
IPR020103PsdUridine_synth_cat_dom
Vocabulary: Biological Process
TermDefinition
GO:0001522pseudouridine synthesis
GO:0009451RNA modification
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0009982pseudouridine synthase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001522 pseudouridine synthesis
biological_process GO:0009451 RNA modification
molecular_function GO:0009982 pseudouridine synthase activity
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePIRSFPIRSF037016Pseudouridin_synth_eukcoord: 6..293
e-value: 3.4E-44
score: 149.1
NoneNo IPR availableGENE3D3.30.2340.10coord: 5..133
e-value: 8.7E-23
score: 80.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 189..222
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 474..674
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 235..257
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 693..716
IPR001656Pseudouridine synthase, TruDPFAMPF01142TruDcoord: 12..117
e-value: 1.1E-6
score: 27.7
IPR011760Pseudouridine synthase, TruD, insertion domainPROSITEPS50984TRUDcoord: 1..135
score: 14.787
IPR020103Pseudouridine synthase, catalytic domainSUPERFAMILY55120Pseudouridine synthasecoord: 13..147
coord: 268..290

Blast
[Close]
BLAST of TCONS_00059600-protein vs. Swiss-Prot (Human)
Match: PUS7 (Pseudouridylate synthase 7 homolog OS=Homo sapiens GN=PUS7 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 2.229e-24
Identity = 61/170 (35.88%), Postives = 95/170 (55.88%), Query Frame = 0 
Query:   13 LPNRERQFHLKAYQAVTWNKFASYRIKQYGLQPIIGDLVLTKGKDSTGISIVKSITAEDINQKQYTVEQVVLPYPGHGLKYPENLCLNYMSNILQQDGIELINIPRRRGDMSLICGYRPIISKPQNVEWDLVSYDDPTLPLIENDYEHLFR----LAAHNFKYRQMKIKY 178
            +P   R  ++ +YQ+  WN   S RI+ YGL+P+ GDLVL KG  +T       I  +D+N   Y++  VV+P PG  + YP++        +L  D +++ N+  +  D SL   YR II +PQNV W++V+YDDP +PL   D ++L      + A   KYR +K+ +
Sbjct:  467 IPRNNRLMYIHSYQSYVWNNMVSKRIEDYGLKPVPGDLVL-KGATAT------YIEEDDVNN--YSIHDVVMPLPGFDVIYPKHKIQEAYREMLTADNLDIDNMRHKIRDYSLSGAYRKIIIRPQNVSWEVVAYDDPKIPLFNTDVDNLEGKTPPVFASEGKYRALKMDF 627
The following BLAST results are available for this feature:
BLAST of TCONS_00059600-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PUS72.229e-2435.88Pseudouridylate synthase 7 homolog OS=Homo sapiens... [more]
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