TCONS_00059444 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00059444
Unique Name	TCONS_00059444
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1176

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_327:375138..381552-

transcript sequence

>TCONS_00059444 ID=TCONS_00059444|Name=TCONS_00059444|organism=Clytia hemisphaerica|type=transcript|length=1176bp
cagtgaaacctaaacaaaaaaaacgaaaaattgaaaattacaaCAACTAT
ACAACCTACTAACCGAAGAAATGTTATACACCATACCTTCTAGGAGAAGT
ACCTAGTAATGCTAAGGCGAGGCAGTATGCCCTCAGCGTTGCATAGCCAA
AGCATTCAGCCAAACTGGCCAATGAAGCAAAAATTCAGAGGGAAACGaca
ACCTGCTTACTATCTTCAACCGGATTACCGAATCCATGAATTCAATAAGC
GTTTGCAGGGCCAAAGTGATaaaaatgacCAAACATGGTGGGACGAGTTG
ATCAACGAATTCTTTGAGGAAGATGCATCTCTCCTCATCCAATACAAAGA
GAAAAACcacaacaaaaaattaaTGATCCACAGGCGGCTGATACCCCGAT
ACTTTCGCAGTCTGTTTGAAGGAGGTGTTTCAAAGATCTATTATGTGGTC
TTGGAGTCAAAAGAGAGTTACATGAATGCCACGGTATCCGTGGACTGCAA
GCATGCTAGCATGATCACTCACTTTGATCAACCCAAAAATCTAAAGGTTC
ATACGGACGGTCATTTAACGATCGAGTTTGCGTTCGATTCTTTCATGAGG
ATTCGGCATTGGAAATTCATTGTGAAGGACACTACAGAGTACCTTCCCAA
ATCTTCCTTCAACGAAAAAGACGAATCGAAAGCCGAAGAAATGGCAAAGA
ATGTCATGGAACACGGTCAACCACCAAAGTCTCTACACTATCTACgtGTT
GGAACGGTACTCGAGTCAATGTTTGAAATGATGGCAAGAGCGAAATCTGG
CACCATGACACCCAGAGAGGCTTTGAAGAGTGTGTTATATGACAAATGGC
AAGCAACTATGCTGAAAATGGAATTCGAAACAAGACATCGAATTTGGAAC
CAAAATACTCAAAGCAGACCTAACAACAAGAAGCGCAAAAACCGAAAAAC
GCCCTCCGTTTCAAACGAGCCGAAGCCGCCTCCGAAAAAGAAATCACCCT
CGACATCCGCCTTTCCACCCATGTCAACATCAGACGTGATGTTTGTCGAT
GAGCCTGTTCTGATGGGCGGCGAGCTGGGAGACGATGACGAAAGAGTCAT
TACAAGATCTATCGTATCAAATCCGAGCAGCAGGCTACTACTATCCACCA
CTTCTTCAACAAATATTCAAATGCTA

Run BLAST on NCBI

transcript from alignment at scaffold_327:375138..381552-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00059444 ID=TCONS_00059444|Name=TCONS_00059444|organism=Clytia hemisphaerica|type=transcript|length=6415bp|location=Sequence derived from alignment at scaffold_327:375138..381552- (Clytia hemisphaerica)
CAGTGAAACCTAAACAAAAAAAACGAAAAATTGAAAATTACAACAACTAT
ACAACCTACTAACCGAAGAAATGTTATACACCATACCTTCTAGGAGAAGT
ACCTAGTAATGCTAAGGCGAGGCAGTATGCCCTCAGCGTTGCATAGCCAA
AGGTGAGATAAATTTGCTACCTTTGGTAGAAATGATGATAGAATTTTGAA
GGGCCTGAGGCACATTTTAGTATTCCCAATTGAAGTACTACGCTTCTTAC
TAAAACTACCATTAAGCTCCTTGGACCAAAGGTTTTTTAACATTCGNGGA
GAACCGACATGCTGGTGATCTTGGTAACATTACAGCTGACTCAAACGGTG
TTGCTAAAGTTGATATCAAAGACAGCCAAATTCCATTGACTGGGGTAAAC
AGTATTGTTGGCAGAGCCGTTGTGGTGCACAAAGATGTTGATGATCTTGG
AGCTGGTGGTTTTGAAGACAGCAAAACAACAGGTCATGCTGGTGCTCGAT
TAGCTTGTGGTGTTGTTGGCCTTTCAAAATGACTACAACAATCTCAGCTT
TGTAGAAAATTATGTTTTTGTATTATATTATTTCAGATCACATTTGTGCA
ATCGACTCTAATGCTTTAGCAGCAGGAGCTCATATATAAGTTTTATTTTA
TATTTAATAATGAAGTCCTTCCAGGCAAATTTTGTATTACTTTTTTAACA
ATAAGATTCTTAGATTCAAAATAACTATTAGCTGTGGGTAGAAATGTTGT
TAATTTGTAGCTAGGGCTCAGTGATTGGTAAATATATAACTTACTTTTTA
GACTAAAACTTTATTCCTAGTCATCATCAACAGTTAAAATTGAAGGGACA
ATCTGATAACTCATGAAATTGAAAAGAATCATGAAAAATCTACCTCTTGA
GTTTAATTGTTAAAAAGGAAGATTTTTTGAATATTTTGGTTTTGACAAAA
CAAGATCTCCAAAAAAACGTTGCTTTTTTTTATTAGTTTTTGGAAATTTG
GTACTGAAATTAATTAGTTAAATTGTTGATCATACTGGCAAATAAGACAT
TGCACTTGACTTTGTAATATTGATCTTCCATTATATTCATCACATTGATT
TTTTTATTTTCAGTGAAACCTAAACAAAAAAAACGAAAAATTGAAAATTA
CAACAACTATACAACCTACTAACCGAAGAAATGTTATACACCATACCTTC
TAGGAGAAGTACCTAGTAATGCTAAGGCGAGGCAGTATGCCCTCAGCGTT
GCATAGCCAAAGGTGAGATAAATTTGCTACCTTTGGTAGAAATGATGATA
GAATTTTAAGGGCCTGAGGCACATTTTAGTATTCCCAATTGAAGTACTAC
GCTTCTTACTAAAACTACCATTAAGCTCCTTGGACCAAAGGCATATGGTT
TTTTTAACATTCATATGTTTCCTTTATTTACTTTTTTGTCTTTAAATTGA
ATTATGTGTATAGATGGAATGTGATAAAAAGGTCCCCTTATTTTCTTTGA
GCCATTTTTCCTATTTTTCAGATGTTTTCAAAAAATAATAAGGGGCTTTC
TTTCAAAATAATAGCTCTTTTATAGAGGTTTCTTTTTCTATTTACTTGGT
TTAACAATAACTAATGAAACAGCAGACCTTAAGCTTATGCATAATTAATT
GTTCAAATGTGCTACTGTTTTTTCTTTTGATTTTTTTTTTGAAAATTTCT
ATAGTCGTCTCTCTCTTTTTCTATCTCATCATCAATACTAGTAAGAAAGT
AGAATGGTGTACTAGTAGTCACAGGAGAGACAGTTTATATGTTTTTGATA
ATAAAGAAGAATCTTTGATTTTATTTTAAAAAGTAAAATTTGCAACGATT
ATTTTGAGGATCCTGCTTGGGTAAATTGGGTAATAACTGTTTACTGTCTT
GGCTTCATTATTTTGAATTATTTTTGGCTGTATATTTTGGACTAGAAACT
TTTATCAAATAAGGATTGTTATGAACGTTTGTTATCCTATTATAAAGTTT
CATAGAAAAGGTTTTTAGCAATAAATCAAAACAGAAGCTTGAGTTTCCTT
TCAATCTTAAAAAACACCAGACTGTGATATTTCATTGTGCTGCTGTTTGG
TATCTTAAAATTGTGAAATCTCTAGACAAACAAAGAGTTTTCATAGGTAG
ATTTAATCTTTTTTTTCTCCATGTTTTCCACCCTAATACTAATACTTTTT
TTCTGTTTTTATATATCAAGCATTCAGCCAAACTGGCCAATGAAGCAAAA
ATTCAGAGGGAAACGGTTAGTTGTCAAAAGCACTCTCGTATTATATCTAC
GTAAATCTTAATAACTTCTAATAGAAATGGCTCTTATCATACTTTTTTTG
CAGCTATTCATTAGAAATCAACAGAGTAACTTTAGGAAATAAATGAATCC
TTTCGATTCCACCTGATACATTTATTCCTTTAGATAGTCACAGGACTTGC
TATAACTGTTACTTCGATAATTTTTTTCTTCATATTTTAGCATTTAGTCT
GTTTTTTATTATATATAATTTACTTTTTTAGACAACCTGCTTACTATCTT
CAACCGGATTACCGAATCCATGAATTCAATAAGCGTTTGCAGGGCCAAAG
TGATGTAAGTTCTTGAGAGCCAAACTAACTCTTTAAAATTGACACATTTC
CAAGACTTTTTGATTAAAAAAACAACTTGGGCATGTGTTGCAACTGATTA
CTATTGAATTACAATGACTCCACTCAATCCTACTAACTTTTCTTGGTGAA
AATAAAAATTATTTCAAACTTCAACATTCCATCCAGCCATAGTATGTTGG
ATGGATTGTTGTAATTTTCTATTCCAGCCTTAAAGATATTCTTTTTCACG
GTATTGAAATTTGTGCGCCACTTATGCTGACAAGATAAAATAAACAAACT
AATTTCTCAAAATTTGTGTTCTCTCGTCGCGGGAGGGAGAAAGTTCTTCA
TTCTTTTGTTTGAACTTTGTAAGCAAGTAGTAGGAGATAAATGATGTATT
ATCGTATTCTCTTAACAGAAAAATGACCAAACATGGTGGGACGAGTTGAT
CAACGAATTCTTTGAGGAAGATGCATCTCTCCTCATCCAATACAAAGAGA
AAAACCACAACAAAAAATTAAGTGAGTCTTCTTAAGTTTAAATTGATTTG
AGATTACTTTTTTAAATCAAGTATAGCTTACCAACTCCTCGTTTCCCATG
AGATCTAATGTTTTTTGATAAATCAGTATTTCAAAGGAACTACATAGGGA
TTAACATAGTTTAGCAATATATTATTATTTATTACAGTGATCCACAGGCG
GCTGATACCCCGATACTTTCGCAGTCTGTTTGAAGGAGGTGTTTCAAAGA
TCTATTATGTGGTCTTGGAGTCAAAAGAGAGTTACATGAATGCCACGGTA
TCCGTGGACTGCAAGCATGCTAGCATGATCACTCACTTTGATCAACCCAA
AAATCTAAAGGTATGATTTATTTCGATGTACTTTAACTTTAGCTATGCTA
GAACCATATAAGAAATGTCTATGTGGTTATCTAATTATGCTTTTTGTTTC
CAGCTGAACTTTCAGGAAGAAAGGATTTTTAATCCCCTCTTACATTTATT
GGGCTTTTCCGGGAAGTAGCATCGTCAATCAAACCTCTCACAAAGTTTTC
ACAATCACCACCGAAAAACTAGATGATATAATTTCATATTTTACTTTCAA
GCATTTAGCGAAGTATAATTTTGTGAACTCAATAGCTTTGGGTCGTCAAC
ATACTGGGAATTTATGCCTGTCCAACCACTATCCTTTTGTTGGGTATATT
AGGCTGAAAACAGTATAGACTAGGTCTGTTGGTTCTTTATTGTCGTGAAA
ATAAAGGACTTCGAGATAATGTAATCCATCGAAGCTGAAATCCTGGAAAG
TAATCAAGTACATTACTTCGAGAAATTTCAAAGTAAGAAGTTTCCTACTG
AAATGAAAGACTTGAACCTATGTTGGGTTACTTTACCTGCTCAGAATAAA
TTATTTTCTATCTCTTATGTTTTTGTAGGTTCATACGGACGGTCATTTAA
CGATCGAGTTTGCGTTCGATTCTTTCATGAGGATTCGGCATTGGAAATTC
ATTGTGAAGGACACTACAGAGTACCTTCCCAAATCTTCCTTCAACGAAAA
AGACGAATCGAAAGCCGAAGAAATGGCAAAGAATGTCATGGAACACGGTC
AACCACCAAAGTCTCTACACTATCTACGTGTAAGTTTTTTTTTTTTTTTT
TTTTTTCTACACCTCAAGTCATAAAATTCCCGTTTTTCTTTGAAATTAAT
TTTATTTTTACATAAGTGTTCTCGTTTCATACCAGACACATTTTATTTCA
TATCAGAACGGTGTCTCTCTATTGTTATACATGTTGTTCTTTTTATAAGC
AAGTGTATGCCCCTTGGTCAGGCTCGTGTATGCTTAAGTTTTCAAAGCAT
TCAGGCATAGATTATGCTTATTATATGCTTATGAATCATGATTATGATTC
ACCTCGAGCCAAGTTTTTAGTGAAATTTCAGAAATTTTGTAAAAATTTGT
TCAGATTTTGGGAGCAGTGGAATGTAGGAAACCGTGGAAAGTCTTTTTTA
CATTTGACCTCTACCAAACATTTTTAAACCGATAAAAATGACAACTTGAA
AAATATTTCAGGCTGACATATATGCTTATGTTATGTTTAGGAATTCTGCA
AATCTGAGCCTTCATATGCTTATAAGCGTTATGCTTATAAAAAAATAACA
TGTATTTTGCTGAATAAACAAAAAATTGTTTTTCTTTCCTCTTTCTGACC
AATTTTGCTCCACATCCGTGTTAATTCAATGCGAAAAAGCTTGTAGATCA
AAATTGATGAGTAAACAAACGATGTCACTCTTATTCAGAAACAAAAATTT
TTAATATCTTTTTTTCAACACATCAGATAATAAACCTGTTCGTTTTAGCG
AATTCAAAATATTACATTTACAGTATTGTCAATAATCGTTGTTGTAAATG
GTCTTAATTTGATTCCTCCTCGTTAGGTTGGAACGGTACTCGAGTCAATG
TTTGAAATGATGGCAAGAGCGAAATCTGGCACCATGACACCCAGAGGTAG
CATTCAAAATTTTGAATCCTTGCAAAATTTCGAGTGTCTTCAGTTTTATC
ACAAACTTTCTTTCAATGTTTCCTTGTAATCCTACATTACTGGATCTTTA
ATCTTTTTAATAAACCTTTAAAAGGTACTGGAGTAATGACAAGTTCCTTT
TAAATTTATTAATATATTTGTGTTTTTTGCAGAGGCTTTGAAGAGTGTGT
TATATGACAAATGGCAAGCAACTATGCTGAAAATGGGTAAGTACCTTTTG
CTTTAGACTTTATTCATACGCGAGTATAAACATTAGAAAAACGAAAGCCT
ACCAGATCCGAATTTTGTACGCAGACTTTGATTTTAAGTTATCCTATTTT
TCTTCCATTTTGATACAAGAAACCCGTAATAAAATTACACCAAGGAATTT
TTCAAACTTTCTAATTGTTATATATTGAATTACTTTCTCCTTTTAAGAAT
TCGAAACAAGACATCGAATTTGGAACCAAAATACTCGTGAGTAGTTTCTC
TTCTCTTTCCATTCTTCTCAAAACGAAGCAATGGTCAGAAAGATGCCTGA
TTAGTTTCTGGAAGTTAACTTTCGGTATATTATGGAATCGAAATACGAAC
ATTTAATACATGATAACCCTATGGTAGGGTGTGTGATGAATTTTCTTTTG
AAATACGTTATCCGAATAAATTAGATAAAAATATTTTTAAAAATTCCGTT
TGCCCCACCTGTTTGTAAAATCAATTTTTATAGAAAGCCTTCCAAAGTGA
TAAATATGACAGTAAGCCATGGTTATTGCTATTGGCGGCTCTGAAATAGA
AAATTTAGGCTTGGTATAGTATCTTTCCAACTTTCATCCTCTTTCAAACA
CTTATTTGTCTTCTCTTTTAGAAAGCAGACCTAACAACAAGAAGCGCAAA
AACCGAAAAACGCCCTCCGTTTCAAACGAGCCGAAGCCGCCTCCGAAAAA
GAAATCACCCTCGACATCCGCCTTTCCACCCATGTCAACATCAGACGTGA
TGTTTGTCGATGAGCCTGTTCTGATGGGCGGCGAGCTGGGAGACGATGAC
GAAAGAGTCATTACAAGGTAGGGACTTCCTCCTGACTTAGTCCTTTACAT
TTGATGTTTTGAATACGAAGCCAGGTCCCTTTTAATTAGTCTTGCAAAAT
TTTAGCTAGGGAAGATTGGGGGCCCCGGAGTAAAAAGAACTTTTCAGACC
TAACAAAAAGTCCCATTTACACTTCTTTTTTCCATACTGCTGTAGATCTA
TCGTATCAAATCCGAGCAGCAGGCTACTACTATCCACCACTTCTTCAACA
AATATTCAAATGCTA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_037414	XLOC_037414	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_327	supercontig	scaffold_327:375138..381552 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
45.382	49.5497	45.5099	47.4812	171.072	163.229	97.7051	102.827	87.444	94.62	69.539	79.2173	60.8621	55.9459	53.0175	62.7159	84.5759	90.0598	37.7515	50.0345	50.4559	57.4954	51.6535	61.7335	50.8045	48.7422	48.0314	36.6328	52.1725	56.1761

Blast

[Close]

BLAST of TCONS_00059444 vs. Swiss-Prot (Human)
Match: LDB2 (LIM domain-binding protein 2 OS=Homo sapiens GN=LDB2 PE=1 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 2.303e-71
Identity = 122/309 (39.48%), Postives = 187/309 (60.52%), Query Frame = 1

Query:  193 KRQPAYYLQPDYRIHEFNKRLQGQSDKNDQTWWDELINEFFEEDASLLIQYKEKNHNKKLMIHRRLIPRYFRSLFEGGVSKIYYVVLESKESYMNATVSVDCKHASMITHFDQPKNLKVHTDGHLTIEFAFDSFMRIRHWKFIVKDTTEYLPKS--SFNEKDESKAEEMAKNVMEHGQPPKSLHYLRVGTVLESMFEMMARAKSGTMTPREALKSVLYDKWQATMLKMEFETRHRIWNQNTQSXXXXXXXXXXXTXXXXXXXXXXXXXXXXXXXXXXXMST--SDVMFVDEPVLMGGELGDDDERVITR 1107
            +R   Y +QP+YRI+E NKRLQ +++ +D  WWD    EFFE+DA+L + +  ++  K+  I R LIPRYF ++FEGGV+ +YY++  SKESY N++++VDC   +M+T   +P   KV T+G L +EF FD  MRI+ W F ++   E +P+S  + + +D    ++++KN+   G    +L+YLR+  +LE M E+M+R K+  ++PR+ LK+ L+ KWQ  +      TR     Q T  R   K   +  + S +         K  +T+A   +S+   DVM V EP LMGGE GD+DER+ITR
Sbjct:   19 RRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQDPQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAEPTR-----QPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPDVMVVGEPTLMGGEFGDEDERLITR 322

The following BLAST results are available for this feature:

BLAST of TCONS_00059444 vs. Swiss-Prot (Human)

BLAST of TCONS_00059444 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
LDB2	2.303e-71	39.48	LIM domain-binding protein 2 OS=Homo sapiens GN=LD...	[more]

You are here

TCONS_00059444 (transcript) - C. hemisphaerica