TCONS_00059443 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059443
Unique NameTCONS_00059443
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2839

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059443 ID=TCONS_00059443|Name=TCONS_00059443|organism=Clytia hemisphaerica|type=transcript|length=2839bp
tttcagtgaaacctaaacaaaaaaaacgaaaaattgaaaattacaaCAAC
TATACAACCTACTAACCGAAGAAATGTTATACACCATACCTTCTAGGAGA
AGTACCTAGTAATGCTAAGGCGAGGCAGTATGCCCTCAGCGTTGCATAGC
CAAAGCATTCAGCCAAACTGGCCAATGAAGCAAAAATTCAGAGGGAAACG
acaACCTGCTTACTATCTTCAACCGGATTACCGAATCCATGAATTCAATA
AGCGTTTGCAGGGCCAAAGTGATaaaaatgacCAAACATGGTGGGACGAG
TTGATCAACGAATTCTTTGAGGAAGATGCATCTCTCCTCATCCAATACAA
AGAGAAAAACcacaacaaaaaattaaTGATCCACAGGCGGCTGATACCCC
GATACTTTCGCAGTCTGTTTGAAGGAGGTGTTTCAAAGATCTATTATGTG
GTCTTGGAGTCAAAAGAGAGTTACATGAATGCCACGGTATCCGTGGACTG
CAAGCATGCTAGCATGATCACTCACTTTGATCAACCCAAAAATCTAAAGG
TTCATACGGACGGTCATTTAACGATCGAGTTTGCGTTCGATTCTTTCATG
AGGATTCGGCATTGGAAATTCATTGTGAAGGACACTACAGAGTACCTTCC
CAAATCTTCCTTCAACGAAAAAGACGAATCGAAAGCCGAAGAAATGGCAA
AGAATGTCATGGAACACGGTCAACCACCAAAGTCTCTACACTATCTACgt
GTTGGAACGGTACTCGAGTCAATGTTTGAAATGATGGCAAGAGCGAAATC
TGGCACCATGACACCCAGAGAGGCTTTGAAGAGTGTGTTATATGACAAAT
GGCAAGCAACTATGCTGAAAATGGAATTCGAAACAAGACATCGAATTTGG
AACCAAAATACTCAAAGCAGACCTAACAACAAGAAGCGCAAAAACCGAAA
AACGCCCTCCGTTTCAAACGAGCCGAAGCCGCCTCCGAAAAAGAAATCAC
CCTCGACATCCGCCTTTCCACCCATGTCAACATCAGACGTGATGTTTGTC
GATGAGCCTGTTCTGATGGGCGGCGAGCTGGGAGACGATGACGAAAGAGT
CATTACAAGGTTGGAGAACGCTCAATTCGACACGCCCAACGGGATGGTCC
CTGGCACTGGCCCTGGTGGCCCGACGGACGATATTGATGATGCTTTTGCA
CCGAGTGGTGGCATCGATCCGTCCTTGATGGGTGACTCACAACCGTGGAA
GAACGAGGTCAAACCCCAGTTACCTCCTCCCAACCAAATGGTCACTCAAT
CCATGTCTCAGGTGATGAGTCAATCGATGGCACACATGGCAGCTGCGGTC
AGTCAGCATCAACAGAACATGAACAACGCACAATCGATGGGTCAAGCTAT
GATTCATCATCatcaacagcaacaacaacagcaacaagcGGCTAATCAGC
AACAGCAGAATCATaatcaacaacaacagcagcaaCAAGTGAACAACGCA
CAGCAACAGAatcagcaacaacaacaacctcaACAGCAAGGACAACcgcc
acaacaacaacaaaatcaaaatcccAACCAACAGAATCAGCAAGTGGCTC
AAATTAAAACTGAGGATCAAAACTCGTAGAGAAAATGTTTACCGAAAGTA
ACCTCTCTTTAGAAGAACATTAGTTTTCCGTTTAAATCGAACAATGTCTC
CCATTATTTTGACTCGAATTAACTTGTAGCTTGAGTCATTATTGATGACA
TTCTTTTCTATGACTGTGTTTAAATCGTCGTAAGTgagctcaaattttga
aaaatattgtctaCTGGTTTTTGCCTAAAATAAGCTCAATTTTTAACTCT
TTGATGAAACTTTTGGCCCCTTCACGTCATTGTCCAACTTTGTCTTCCGC
TGTATTTTGGCGTCCTAACATACAAGTTTATTGTAGCAATATATTGATAA
CAATaatgataatatttttaaaccttttaaaattttggtttttacttttc
atttttatatgaaTGTCACGTGAGCGTCTTGGTTATTTAATGTTATGTAG
TAGTAATGCCCAATTTCTTTTATTCGTCTATCGTTTATTTTTTATCTCAA
ACAATTAATTTTAATCCGTCTTTTGTCAACGAAGTGTATTTCCTtataat
gttttttataatatttaCTAGTATTATTTTGTCTCCAATATTACGTGTAT
TGCTTTATTTTTgatttgacccttttttaaagtcaattttGTTTTCACTG
GTAGATCAGCAATGACCTAAGAGATCAACAGATACTTGCTCAGGTTTGCT
AATACACTATTTTTTAACCTTACCGAAAATGTCTTCTTTGAAATATGTTT
TAGAAACGTTTGCATATATTTTTCTGATGGTCTCTCTCTACCTTTGTTTG
TCTTTCCTTGTTTTCGTGGAGAATTATTTATTGAACTTGCATTAATCCCA
AACATCTCAAATATAAATTAAGCAGTTTTTCGTTAGAAGATGAACCTAGC
CTAAGTCATCTACGTTCATAATTTTCAGTGGTACCGATATCTTTTTACCG
ATATCATTTTGCAATTCCatggttttttcattttttcaaccaaATCTATC
AATGTCATCAATGTATGTGTAAATCCTCAGGCTTATTTTTAAAGATATAT
AATGGTAATTTTTACTTGATTactttttaatctttttgtttattttttgt
gaGAAATTGTGGTAAAAGAACTATTTTcacagtttttttttctcaacatg
tattatatattttttgagtaAGTGTCATCTTTACTGCGCGCTAACAAAGG
tgcaaggaaagaaaaattgaaagtctttttcattgatga
Run BLAST on NCBI

transcript from alignment at scaffold_327:373289..381555-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059443 ID=TCONS_00059443|Name=TCONS_00059443|organism=Clytia hemisphaerica|type=transcript|length=8267bp|location=Sequence derived from alignment at scaffold_327:373289..381555- (Clytia hemisphaerica)
TTTCAGTGAAACCTAAACAAAAAAAACGAAAAATTGAAAATTACAACAAC
TATACAACCTACTAACCGAAGAAATGTTATACACCATACCTTCTAGGAGA
AGTACCTAGTAATGCTAAGGCGAGGCAGTATGCCCTCAGCGTTGCATAGC
CAAAGGTGAGATAAATTTGCTACCTTTGGTAGAAATGATGATAGAATTTT
GAAGGGCCTGAGGCACATTTTAGTATTCCCAATTGAAGTACTACGCTTCT
TACTAAAACTACCATTAAGCTCCTTGGACCAAAGGTTTTTTAACATTCGN
GGAGAACCGACATGCTGGTGATCTTGGTAACATTACAGCTGACTCAAACG
GTGTTGCTAAAGTTGATATCAAAGACAGCCAAATTCCATTGACTGGGGTA
AACAGTATTGTTGGCAGAGCCGTTGTGGTGCACAAAGATGTTGATGATCT
TGGAGCTGGTGGTTTTGAAGACAGCAAAACAACAGGTCATGCTGGTGCTC
GATTAGCTTGTGGTGTTGTTGGCCTTTCAAAATGACTACAACAATCTCAG
CTTTGTAGAAAATTATGTTTTTGTATTATATTATTTCAGATCACATTTGT
GCAATCGACTCTAATGCTTTAGCAGCAGGAGCTCATATATAAGTTTTATT
TTATATTTAATAATGAAGTCCTTCCAGGCAAATTTTGTATTACTTTTTTA
ACAATAAGATTCTTAGATTCAAAATAACTATTAGCTGTGGGTAGAAATGT
TGTTAATTTGTAGCTAGGGCTCAGTGATTGGTAAATATATAACTTACTTT
TTAGACTAAAACTTTATTCCTAGTCATCATCAACAGTTAAAATTGAAGGG
ACAATCTGATAACTCATGAAATTGAAAAGAATCATGAAAAATCTACCTCT
TGAGTTTAATTGTTAAAAAGGAAGATTTTTTGAATATTTTGGTTTTGACA
AAACAAGATCTCCAAAAAAACGTTGCTTTTTTTTATTAGTTTTTGGAAAT
TTGGTACTGAAATTAATTAGTTAAATTGTTGATCATACTGGCAAATAAGA
CATTGCACTTGACTTTGTAATATTGATCTTCCATTATATTCATCACATTG
ATTTTTTTATTTTCAGTGAAACCTAAACAAAAAAAACGAAAAATTGAAAA
TTACAACAACTATACAACCTACTAACCGAAGAAATGTTATACACCATACC
TTCTAGGAGAAGTACCTAGTAATGCTAAGGCGAGGCAGTATGCCCTCAGC
GTTGCATAGCCAAAGGTGAGATAAATTTGCTACCTTTGGTAGAAATGATG
ATAGAATTTTAAGGGCCTGAGGCACATTTTAGTATTCCCAATTGAAGTAC
TACGCTTCTTACTAAAACTACCATTAAGCTCCTTGGACCAAAGGCATATG
GTTTTTTTAACATTCATATGTTTCCTTTATTTACTTTTTTGTCTTTAAAT
TGAATTATGTGTATAGATGGAATGTGATAAAAAGGTCCCCTTATTTTCTT
TGAGCCATTTTTCCTATTTTTCAGATGTTTTCAAAAAATAATAAGGGGCT
TTCTTTCAAAATAATAGCTCTTTTATAGAGGTTTCTTTTTCTATTTACTT
GGTTTAACAATAACTAATGAAACAGCAGACCTTAAGCTTATGCATAATTA
ATTGTTCAAATGTGCTACTGTTTTTTCTTTTGATTTTTTTTTTGAAAATT
TCTATAGTCGTCTCTCTCTTTTTCTATCTCATCATCAATACTAGTAAGAA
AGTAGAATGGTGTACTAGTAGTCACAGGAGAGACAGTTTATATGTTTTTG
ATAATAAAGAAGAATCTTTGATTTTATTTTAAAAAGTAAAATTTGCAACG
ATTATTTTGAGGATCCTGCTTGGGTAAATTGGGTAATAACTGTTTACTGT
CTTGGCTTCATTATTTTGAATTATTTTTGGCTGTATATTTTGGACTAGAA
ACTTTTATCAAATAAGGATTGTTATGAACGTTTGTTATCCTATTATAAAG
TTTCATAGAAAAGGTTTTTAGCAATAAATCAAAACAGAAGCTTGAGTTTC
CTTTCAATCTTAAAAAACACCAGACTGTGATATTTCATTGTGCTGCTGTT
TGGTATCTTAAAATTGTGAAATCTCTAGACAAACAAAGAGTTTTCATAGG
TAGATTTAATCTTTTTTTTCTCCATGTTTTCCACCCTAATACTAATACTT
TTTTTCTGTTTTTATATATCAAGCATTCAGCCAAACTGGCCAATGAAGCA
AAAATTCAGAGGGAAACGGTTAGTTGTCAAAAGCACTCTCGTATTATATC
TACGTAAATCTTAATAACTTCTAATAGAAATGGCTCTTATCATACTTTTT
TTGCAGCTATTCATTAGAAATCAACAGAGTAACTTTAGGAAATAAATGAA
TCCTTTCGATTCCACCTGATACATTTATTCCTTTAGATAGTCACAGGACT
TGCTATAACTGTTACTTCGATAATTTTTTTCTTCATATTTTAGCATTTAG
TCTGTTTTTTATTATATATAATTTACTTTTTTAGACAACCTGCTTACTAT
CTTCAACCGGATTACCGAATCCATGAATTCAATAAGCGTTTGCAGGGCCA
AAGTGATGTAAGTTCTTGAGAGCCAAACTAACTCTTTAAAATTGACACAT
TTCCAAGACTTTTTGATTAAAAAAACAACTTGGGCATGTGTTGCAACTGA
TTACTATTGAATTACAATGACTCCACTCAATCCTACTAACTTTTCTTGGT
GAAAATAAAAATTATTTCAAACTTCAACATTCCATCCAGCCATAGTATGT
TGGATGGATTGTTGTAATTTTCTATTCCAGCCTTAAAGATATTCTTTTTC
ACGGTATTGAAATTTGTGCGCCACTTATGCTGACAAGATAAAATAAACAA
ACTAATTTCTCAAAATTTGTGTTCTCTCGTCGCGGGAGGGAGAAAGTTCT
TCATTCTTTTGTTTGAACTTTGTAAGCAAGTAGTAGGAGATAAATGATGT
ATTATCGTATTCTCTTAACAGAAAAATGACCAAACATGGTGGGACGAGTT
GATCAACGAATTCTTTGAGGAAGATGCATCTCTCCTCATCCAATACAAAG
AGAAAAACCACAACAAAAAATTAAGTGAGTCTTCTTAAGTTTAAATTGAT
TTGAGATTACTTTTTTAAATCAAGTATAGCTTACCAACTCCTCGTTTCCC
ATGAGATCTAATGTTTTTTGATAAATCAGTATTTCAAAGGAACTACATAG
GGATTAACATAGTTTAGCAATATATTATTATTTATTACAGTGATCCACAG
GCGGCTGATACCCCGATACTTTCGCAGTCTGTTTGAAGGAGGTGTTTCAA
AGATCTATTATGTGGTCTTGGAGTCAAAAGAGAGTTACATGAATGCCACG
GTATCCGTGGACTGCAAGCATGCTAGCATGATCACTCACTTTGATCAACC
CAAAAATCTAAAGGTATGATTTATTTCGATGTACTTTAACTTTAGCTATG
CTAGAACCATATAAGAAATGTCTATGTGGTTATCTAATTATGCTTTTTGT
TTCCAGCTGAACTTTCAGGAAGAAAGGATTTTTAATCCCCTCTTACATTT
ATTGGGCTTTTCCGGGAAGTAGCATCGTCAATCAAACCTCTCACAAAGTT
TTCACAATCACCACCGAAAAACTAGATGATATAATTTCATATTTTACTTT
CAAGCATTTAGCGAAGTATAATTTTGTGAACTCAATAGCTTTGGGTCGTC
AACATACTGGGAATTTATGCCTGTCCAACCACTATCCTTTTGTTGGGTAT
ATTAGGCTGAAAACAGTATAGACTAGGTCTGTTGGTTCTTTATTGTCGTG
AAAATAAAGGACTTCGAGATAATGTAATCCATCGAAGCTGAAATCCTGGA
AAGTAATCAAGTACATTACTTCGAGAAATTTCAAAGTAAGAAGTTTCCTA
CTGAAATGAAAGACTTGAACCTATGTTGGGTTACTTTACCTGCTCAGAAT
AAATTATTTTCTATCTCTTATGTTTTTGTAGGTTCATACGGACGGTCATT
TAACGATCGAGTTTGCGTTCGATTCTTTCATGAGGATTCGGCATTGGAAA
TTCATTGTGAAGGACACTACAGAGTACCTTCCCAAATCTTCCTTCAACGA
AAAAGACGAATCGAAAGCCGAAGAAATGGCAAAGAATGTCATGGAACACG
GTCAACCACCAAAGTCTCTACACTATCTACGTGTAAGTTTTTTTTTTTTT
TTTTTTTTTCTACACCTCAAGTCATAAAATTCCCGTTTTTCTTTGAAATT
AATTTTATTTTTACATAAGTGTTCTCGTTTCATACCAGACACATTTTATT
TCATATCAGAACGGTGTCTCTCTATTGTTATACATGTTGTTCTTTTTATA
AGCAAGTGTATGCCCCTTGGTCAGGCTCGTGTATGCTTAAGTTTTCAAAG
CATTCAGGCATAGATTATGCTTATTATATGCTTATGAATCATGATTATGA
TTCACCTCGAGCCAAGTTTTTAGTGAAATTTCAGAAATTTTGTAAAAATT
TGTTCAGATTTTGGGAGCAGTGGAATGTAGGAAACCGTGGAAAGTCTTTT
TTACATTTGACCTCTACCAAACATTTTTAAACCGATAAAAATGACAACTT
GAAAAATATTTCAGGCTGACATATATGCTTATGTTATGTTTAGGAATTCT
GCAAATCTGAGCCTTCATATGCTTATAAGCGTTATGCTTATAAAAAAATA
ACATGTATTTTGCTGAATAAACAAAAAATTGTTTTTCTTTCCTCTTTCTG
ACCAATTTTGCTCCACATCCGTGTTAATTCAATGCGAAAAAGCTTGTAGA
TCAAAATTGATGAGTAAACAAACGATGTCACTCTTATTCAGAAACAAAAA
TTTTTAATATCTTTTTTTCAACACATCAGATAATAAACCTGTTCGTTTTA
GCGAATTCAAAATATTACATTTACAGTATTGTCAATAATCGTTGTTGTAA
ATGGTCTTAATTTGATTCCTCCTCGTTAGGTTGGAACGGTACTCGAGTCA
ATGTTTGAAATGATGGCAAGAGCGAAATCTGGCACCATGACACCCAGAGG
TAGCATTCAAAATTTTGAATCCTTGCAAAATTTCGAGTGTCTTCAGTTTT
ATCACAAACTTTCTTTCAATGTTTCCTTGTAATCCTACATTACTGGATCT
TTAATCTTTTTAATAAACCTTTAAAAGGTACTGGAGTAATGACAAGTTCC
TTTTAAATTTATTAATATATTTGTGTTTTTTGCAGAGGCTTTGAAGAGTG
TGTTATATGACAAATGGCAAGCAACTATGCTGAAAATGGGTAAGTACCTT
TTGCTTTAGACTTTATTCATACGCGAGTATAAACATTAGAAAAACGAAAG
CCTACCAGATCCGAATTTTGTACGCAGACTTTGATTTTAAGTTATCCTAT
TTTTCTTCCATTTTGATACAAGAAACCCGTAATAAAATTACACCAAGGAA
TTTTTCAAACTTTCTAATTGTTATATATTGAATTACTTTCTCCTTTTAAG
AATTCGAAACAAGACATCGAATTTGGAACCAAAATACTCGTGAGTAGTTT
CTCTTCTCTTTCCATTCTTCTCAAAACGAAGCAATGGTCAGAAAGATGCC
TGATTAGTTTCTGGAAGTTAACTTTCGGTATATTATGGAATCGAAATACG
AACATTTAATACATGATAACCCTATGGTAGGGTGTGTGATGAATTTTCTT
TTGAAATACGTTATCCGAATAAATTAGATAAAAATATTTTTAAAAATTCC
GTTTGCCCCACCTGTTTGTAAAATCAATTTTTATAGAAAGCCTTCCAAAG
TGATAAATATGACAGTAAGCCATGGTTATTGCTATTGGCGGCTCTGAAAT
AGAAAATTTAGGCTTGGTATAGTATCTTTCCAACTTTCATCCTCTTTCAA
ACACTTATTTGTCTTCTCTTTTAGAAAGCAGACCTAACAACAAGAAGCGC
AAAAACCGAAAAACGCCCTCCGTTTCAAACGAGCCGAAGCCGCCTCCGAA
AAAGAAATCACCCTCGACATCCGCCTTTCCACCCATGTCAACATCAGACG
TGATGTTTGTCGATGAGCCTGTTCTGATGGGCGGCGAGCTGGGAGACGAT
GACGAAAGAGTCATTACAAGGTAGGGACTTCCTCCTGACTTAGTCCTTTA
CATTTGATGTTTTGAATACGAAGCCAGGTCCCTTTTAATTAGTCTTGCAA
AATTTTAGCTAGGGAAGATTGGGGGCCCCGGAGTAAAAAGAACTTTTCAG
ACCTAACAAAAAGTCCCATTTACACTTCTTTTTTCCATACTGCTGTAGAT
CTATCGTATCAAATCCGAGCAGCAGGCTACTACTATCCACCACTTCTTCA
ACAAATATTCAAATGCTACAGCAGTTCACAAAACAAACTACTCAACAATT
AACACAAATGCACAGTTAGGAAGCCTTCACACTTCACAACTCCGCCTCAC
ACCCCTTCATCAATATGGTTTTGTTTTGTTTTGCTAGGTTGGAGAACGCT
CAATTCGACACGCCCAACGGGATGGTCCCTGGCACTGGCCCTGGTGGCCC
GACGGACGATATTGATGATGCTTTTGCACCGAGTGGTGGCATCGATCCGT
CCTTGATGGGTGACTCACAACCGTGGAAGAACGAGGTCAAACCCCAGTTA
CCTCCTCCCAACCAAATGGTCACTCAATCCATGTCTCAGGTGATGAGTCA
ATCGATGGCACACATGGCAGCTGCGGTCAGTCAGCATCAACAGAACATGA
ACAACGCACAATCGATGGGTCAAGCTATGATTCATCATCATCAACAGCAA
CAACAACAGCAACAAGCGGCTAATCAGCAACAGCAGAATCATAATCAACA
ACAACAGCAGCAACAAGTGAACAACGCACAGCAACAGAATCAGCAACAAC
AACAACCTCAACAGCAAGGACAACCGCCACAACAACAACAAAATCAAAAT
CCCAACCAACAGAATCAGCAAGTGGCTCAAATTAAAACTGAGGATCAAAA
CTCGTAGAGAAAATGTTTACCGAAAGTAACCTCTCTTTAGAAGAACATTA
GTTTTCCGTTTAAATCGAACAATGTCTCCCATTATTTTGACTCGAATTAA
CTTGTAGCTTGAGTCATTATTGATGACATTCTTTTCTATGACTGTGTTTA
AATCGTCGTAAGTGAGCTCAAATTTTGAAAAATATTGTCTACTGGTTTTT
GCCTAAAATAAGCTCAATTTTTAACTCTTTGATGAAACTTTTGGCCCCTT
CACGTCATTGTCCAACTTTGTCTTCCGCTGTATTTTGGCGTCCTAACATA
CAAGTTTATTGTAGCAATATATTGATAACAATAATGATAATATTTTTAAA
CCTTTTAAAATTTTGGTTTTTACTTTTCATTTTTATATGAATGTCACGTG
AGCGTCTTGGTTATTTAATGTTATGTAGTAGTAATGCCCAATTTCTTTTA
TTCGTCTATCGTTTATTTTTTATCTCAAACAATTAATTTTAATCCGTCTT
TTGTCAACGAAGTGTATTTCCTTATAATGTTTTTTATAATATTTACTAGT
ATTATTTTGTCTCCAATATTACGTGTATTGCTTTATTTTTGATTTGACCC
TTTTTTAAAGTCAATTTTGTTTTCACTGGTAGATCAGCAATGACCTAAGA
GATCAACAGATACTTGCTCAGGTTTGCTAATACACTATTTTTTAACCTTA
CCGAAAATGTCTTCTTTGAAATATGTTTTAGAAACGTTTGCATATATTTT
TCTGATGGTCTCTCTCTACCTTTGTTTGTCTTTCCTTGTTTTCGTGGAGA
ATTATTTATTGAACTTGCATTAATCCCAAACATCTCAAATATAAATTAAG
CAGTTTTTCGTTAGAAGATGAACCTAGCCTAAGTCATCTACGTTCATAAT
TTTCAGTGGTACCGATATCTTTTTACCGATATCATTTTGCAATTCCATGG
TTTTTTCATTTTTTCAACCAAATCTATCAATGTCATCAATGTATGTGTAA
ATCCTCAGGCTTATTTTTAAAGATATATAATGGTAATTTTTACTTGATTA
CTTTTTAATCTTTTTGTTTATTTTTTGTGAGAAATTGTGGTAAAAGAACT
ATTTTCACAGTTTTTTTTTCTCAACATGTATTATATATTTTTTGAGTAAG
TGTCATCTTTACTGCGCGCTAACAAAGGTGCAAGGAAAGAAAAATTGAAA
GTCTTTTTCATTGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037414XLOC_037414Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059443-exon-scaffold_327-1575043694:381432..381555TCONS_00059443-exon-scaffold_327-1575043694:381432..381555Clytia hemisphaericaexon
TCONS_00059443-exon-scaffold_327-1575043694:380291..380321TCONS_00059443-exon-scaffold_327-1575043694:380291..380321Clytia hemisphaericaexon
TCONS_00059443-exon-scaffold_327-1575043694:379288..379332TCONS_00059443-exon-scaffold_327-1575043694:379288..379332Clytia hemisphaericaexon
TCONS_00059443-exon-scaffold_327-1575043694:378949..379021TCONS_00059443-exon-scaffold_327-1575043694:378949..379021Clytia hemisphaericaexon
TCONS_00059443-exon-scaffold_327-1575043694:378432..378534TCONS_00059443-exon-scaffold_327-1575043694:378432..378534Clytia hemisphaericaexon
TCONS_00059443-exon-scaffold_327-1575043694:378093..378265TCONS_00059443-exon-scaffold_327-1575043694:378093..378265Clytia hemisphaericaexon
TCONS_00059443-exon-scaffold_327-1575043694:377324..377524TCONS_00059443-exon-scaffold_327-1575043694:377324..377524Clytia hemisphaericaexon
TCONS_00059443-exon-scaffold_327-1575043694:376457..376526TCONS_00059443-exon-scaffold_327-1575043694:376457..376526Clytia hemisphaericaexon
TCONS_00059443-exon-scaffold_327-1575043694:376217..376270TCONS_00059443-exon-scaffold_327-1575043694:376217..376270Clytia hemisphaericaexon
TCONS_00059443-exon-scaffold_327-1575043694:375967..376005TCONS_00059443-exon-scaffold_327-1575043694:375967..376005Clytia hemisphaericaexon
TCONS_00059443-exon-scaffold_327-1575043694:375386..375581TCONS_00059443-exon-scaffold_327-1575043694:375386..375581Clytia hemisphaericaexon
TCONS_00059443-exon-scaffold_327-1575043694:373289..375018TCONS_00059443-exon-scaffold_327-1575043694:373289..375018Clytia hemisphaericaexon
TCONS_00059443-exon-scaffold_327-1510915933:381432..381555TCONS_00059443-exon-scaffold_327-1510915933:381432..381555Clytia hemisphaericaexon
TCONS_00059443-exon-scaffold_327-1510915933:380291..380321TCONS_00059443-exon-scaffold_327-1510915933:380291..380321Clytia hemisphaericaexon
TCONS_00059443-exon-scaffold_327-1510915933:379288..379332TCONS_00059443-exon-scaffold_327-1510915933:379288..379332Clytia hemisphaericaexon
TCONS_00059443-exon-scaffold_327-1510915933:378949..379021TCONS_00059443-exon-scaffold_327-1510915933:378949..379021Clytia hemisphaericaexon
TCONS_00059443-exon-scaffold_327-1510915933:378432..378534TCONS_00059443-exon-scaffold_327-1510915933:378432..378534Clytia hemisphaericaexon
TCONS_00059443-exon-scaffold_327-1510915933:378093..378265TCONS_00059443-exon-scaffold_327-1510915933:378093..378265Clytia hemisphaericaexon
TCONS_00059443-exon-scaffold_327-1510915933:377324..377524TCONS_00059443-exon-scaffold_327-1510915933:377324..377524Clytia hemisphaericaexon
TCONS_00059443-exon-scaffold_327-1510915933:376457..376526TCONS_00059443-exon-scaffold_327-1510915933:376457..376526Clytia hemisphaericaexon
TCONS_00059443-exon-scaffold_327-1510915933:376217..376270TCONS_00059443-exon-scaffold_327-1510915933:376217..376270Clytia hemisphaericaexon
TCONS_00059443-exon-scaffold_327-1510915933:375967..376005TCONS_00059443-exon-scaffold_327-1510915933:375967..376005Clytia hemisphaericaexon
TCONS_00059443-exon-scaffold_327-1510915933:375386..375581TCONS_00059443-exon-scaffold_327-1510915933:375386..375581Clytia hemisphaericaexon
TCONS_00059443-exon-scaffold_327-1510915933:373289..375018TCONS_00059443-exon-scaffold_327-1510915933:373289..375018Clytia hemisphaericaexon
TCONS_00059443-exon-scaffold_327-1491911889:381432..381555TCONS_00059443-exon-scaffold_327-1491911889:381432..381555Clytia hemisphaericaexon
TCONS_00059443-exon-scaffold_327-1491911889:380291..380321TCONS_00059443-exon-scaffold_327-1491911889:380291..380321Clytia hemisphaericaexon
TCONS_00059443-exon-scaffold_327-1491911889:379288..379332TCONS_00059443-exon-scaffold_327-1491911889:379288..379332Clytia hemisphaericaexon
TCONS_00059443-exon-scaffold_327-1491911889:378949..379021TCONS_00059443-exon-scaffold_327-1491911889:378949..379021Clytia hemisphaericaexon
TCONS_00059443-exon-scaffold_327-1491911889:378432..378534TCONS_00059443-exon-scaffold_327-1491911889:378432..378534Clytia hemisphaericaexon
TCONS_00059443-exon-scaffold_327-1491911889:378093..378265TCONS_00059443-exon-scaffold_327-1491911889:378093..378265Clytia hemisphaericaexon
TCONS_00059443-exon-scaffold_327-1491911889:377324..377524TCONS_00059443-exon-scaffold_327-1491911889:377324..377524Clytia hemisphaericaexon
TCONS_00059443-exon-scaffold_327-1491911889:376457..376526TCONS_00059443-exon-scaffold_327-1491911889:376457..376526Clytia hemisphaericaexon
TCONS_00059443-exon-scaffold_327-1491911889:376217..376270TCONS_00059443-exon-scaffold_327-1491911889:376217..376270Clytia hemisphaericaexon
TCONS_00059443-exon-scaffold_327-1491911889:375967..376005TCONS_00059443-exon-scaffold_327-1491911889:375967..376005Clytia hemisphaericaexon
TCONS_00059443-exon-scaffold_327-1491911889:375386..375581TCONS_00059443-exon-scaffold_327-1491911889:375386..375581Clytia hemisphaericaexon
TCONS_00059443-exon-scaffold_327-1491911889:373289..375018TCONS_00059443-exon-scaffold_327-1491911889:373289..375018Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_327supercontigscaffold_327:373289..381555 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
20.6863	19.8495	20.1017	39.7223	299.393	203.143	137.375	152.629	23.8351	28.8058	22.2496	25.2127	40.4673	42.9121	44.8075	52.4993	31.6721	50.607	30.4065	19.1969	23.2998	26.8037	25.0448	24.6144	53.5613	53.4925	52.6104	39.6629	37.0377	22.8844
Blast
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BLAST of TCONS_00059443 vs. Swiss-Prot (Human)
Match: LDB2 (LIM domain-binding protein 2 OS=Homo sapiens GN=LDB2 PE=1 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 1.480e-71
Identity = 127/316 (40.19%), Postives = 193/316 (61.08%), Query Frame = 1 
Query:  196 KRQPAYYLQPDYRIHEFNKRLQGQSDKNDQTWWDELINEFFEEDASLLIQYKEKNHNKKLMIHRRLIPRYFRSLFEGGVSKIYYVVLESKESYMNATVSVDCKHASMITHFDQPKNLKVHTDGHLTIEFAFDSFMRIRHWKFIVKDTTEYLPKS--SFNEKDESKAEEMAKNVMEHGQPPKSLHYLRVGTVLESMFEMMARAKSGTMTPREALKSVLYDKWQATMLKMEFETRHRIWNQNTQSXXXXXXXXXXXTXXXXXXXXXXXXXXXXXXXXXXXMSTS--DVMFVDEPVLMGGELGDDDERVITRLENAQFD 1131
            +R   Y +QP+YRI+E NKRLQ +++ +D  WWD    EFFE+DA+L + +  ++  K+  I R LIPRYF ++FEGGV+ +YY++  SKESY N++++VDC   +M+T   +P   KV T+G L +EF FD  MRI+ W F ++   E +P+S  + + +D    ++++KN+   G    +L+YLR+  +LE M E+M+R K+  ++PR+ LK+ L+ KWQ  +      TR     Q T  R   K   +  + S +         K  +T+A   +S+   DVM V EP LMGGE GD+DER+ITRLEN Q+D
Sbjct:   19 RRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQDPQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAEPTR-----QPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPDVMVVGEPTLMGGEFGDEDERLITRLENTQYD 329
The following BLAST results are available for this feature:
BLAST of TCONS_00059443 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LDB21.480e-7140.19LIM domain-binding protein 2 OS=Homo sapiens GN=LD... [more]
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