|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059440 ID=TCONS_00059440|Name=TCONS_00059440|organism=Clytia hemisphaerica|type=transcript|length=2413bp
TtagtgaaaatgaataaaaatgaaacgaaAATTGTTATTATGAGTCCTAA
ATCTTAAACACCGATAGAGCATGGATGTTGATGTCAACATCAATTTAAAG
AAGGTCTTTATCAGGGAAAGCCAAATGCATCCATTTCAACAACACAGATC
GTTCAGCAAGTTGCTAATTGTTGTAAAGAAAGATGtggAGACAAAAAATG
TGGATAATTTTCCatcggggacgatattttggccaattgtTGGTTATACC
AAATTTAGCGAGTGTACGAAAGGAAATGCAGGTGTTCTGAAGATGGACCT
CAATTCATTTTGATCCATATCGATTTACTGGgTTGGCTTTACCGTCGATT
GAAAGCAATAAAGCAGTGCCTATTATCAATAACGACCAGACAAAACCATC
TCTTCTGAAACATCATAATGATGGTTCTAATACCATCACAAAAGAGTTCC
CAACAAATGATAGTACTGATGACAAGGTTTCTTCAAAATCCAACATCTTT
ACTGAATACGTGAAATATTTACGAGAAAAAGAAGTGAGGGAGAATGGCTA
CCTTCAGCAGATTATTTCAACGAACAATCCTGTCAATGAACTATCACCAC
AATCTGGCAATCTTAATGTGCTCGCACAAACTGGCTACAAACAGACGACA
CAACGCTTCATTAATGAGCTACTGGCCGCTGATCAAGCGACATCAACATC
TACTACACAACGACAAATTGTTGTCAACAAGCTCAAAAACAAGATGACGC
TTTTCATGAGCAAACCATACGATACAGGAGGACCCTTATTATCACCCGTC
AACCTTCAAAAAGAATTCATTGCTCTTAAACAGGAACGTGATTCAAACGA
TCGCCAATCGGGATACAtccatgatgacgtcattattggaGGACACCATA
TTGGGGACCATGATAAAGTTCTTTTTCATGACGACATCCGAGATCGTAAT
TTATTTGACATGCCGATCGTCACGACCAACGAATGTTCTATAAACTCTCT
CTATCACACTAACGAACCTCAAACACCGACAGGCCCACATAATCACCATA
CAACCCCTAGTTTCGTCACATACCAAATCTCTTCAAACACGAACCAATCA
AATGGCTGGAACAACCTTATGGATGATTACTCGCATCCTGGAGGCGACAC
GAATGACCTTCACGATTCATCGGAGACTTTCTCTTCTTTCAATGATCCTG
TCTTCACGTTTAAAGACACGGGCGACCAACACAACGCTGATCCAACCTCG
CCACCACACCTTTCAAAACCACATTCGCTTCCAGCTCTTATCCTTACTGA
TAAATCGCCATCTCGTTACAGCGATCATACTTCACCCACAGGTGTTCCGT
TAACGCCCTTGACGCCTCTTGGCGGTGTCGTTCCATTCGGAAGCCCCCCT
CACAACAGTGCTTTCTCTCAACCGACCACTAATCGTGATTTATACAAAGA
CTTATGTTACGCGACCAATCGGCAACAAGAATACCCGCCCATCTCACCAA
ATGAAGAAATTCCGCCTCAGCTCCCACCCCCGATGATTCATCATCAGCAA
CGAAGCCCGAGTTTCAACGAAATCCTACCGTCCTCTCAAAATCAAGTTGG
TCGTCCAAATAACACtcaagaaaatgatattttcataCAACAACAGACTC
CTCGAGGAGGCGGTGGCGGGCTTTGTAGTCCTAATGGTCCGCCTACCCAA
TACATCAAATTGAATTCGTCTTATCAGCAACCGTGTGGAAATAACACAAG
TTCAGTTTTAAATAGTTTATACCAACAGGAACATAACATTAACATGCAAT
TCGGTGGTAACATGTCAGGAGTTAGTTTCCTAACCACTGGACCCCCACCT
AATGATAATATCGACATTAGCGCAGGTATGGGACCCATATCGCCGCACAA
CGGTGGCCCATTTATGccagaaaaaatcaaagttagTTGTAATGAAGACA
TAGTCAATGATTTGAATTCAAAGAAAGTTGGAAATAAAGGATATTTATGT
GAGTTGTGTGGGAAGTTGTACACAAGGAAGTACGGACTGAAAATTCATAT
GCGAATCCATACCGGTTTTAAACCTTTACGATGTCAGTATTGTCAAAAAC
GTTTTGGAGACCCTTCGAACATGGCTAAACATATTAGACTACACGCTGTT
GGTGATACTCCGTATAAATGCCCTTATTGCGCAAAGGTTTTAGTACGACG
CCGAGATTTAGAGCGCCACATTAAATCGCGTCATCCGCAGGGGTGATGTC
TTTCTTGTATATATAAAAGAATTTTATTAGATTTATTGGGGATTTATATT
cccttgatttttttatttttaaccctttaagtgccgatgtcgtatatata
cgacatgggctatataggagggcgaagccctcctgtaatgcccagtttga
gttagaaatcgtt Run BLAST on NCBI protein sequence of TCONS_00059440-protein >TCONS_00059440-protein ID=TCONS_00059440-protein|Name=TCONS_00059440-protein|organism=Clytia hemisphaerica|type=polypeptide|length=500bp
MTLFMSKPYDTGGPLLSPVNLQKEFIALKQERDSNDRQSGYIHDDVIIGG
HHIGDHDKVLFHDDIRDRNLFDMPIVTTNECSINSLYHTNEPQTPTGPHN
HHTTPSFVTYQISSNTNQSNGWNNLMDDYSHPGGDTNDLHDSSETFSSFN
DPVFTFKDTGDQHNADPTSPPHLSKPHSLPALILTDKSPSRYSDHTSPTG
VPLTPLTPLGGVVPFGSPPHNSAFSQPTTNRDLYKDLCYATNRQQEYPPI
SPNEEIPPQLPPPMIHHQQRSPSFNEILPSSQNQVGRPNNTQENDIFIQQ
QTPRGGGGGLCSPNGPPTQYIKLNSSYQQPCGNNTSSVLNSLYQQEHNIN
MQFGGNMSGVSFLTTGPPPNDNIDISAGMGPISPHNGGPFMPEKIKVSCN
EDIVNDLNSKKVGNKGYLCELCGKLYTRKYGLKIHMRIHTGFKPLRCQYC
QKRFGDPSNMAKHIRLHAVGDTPYKCPYCAKVLVRRRDLERHIKSRHPQG Run BLAST on NCBI transcript from alignment at scaffold_327:325479..341544- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059440 ID=TCONS_00059440|Name=TCONS_00059440|organism=Clytia hemisphaerica|type=transcript|length=16066bp|location=Sequence derived from alignment at scaffold_327:325479..341544- (Clytia hemisphaerica)
TTAGTGAAAATGAATAAAAATGAAACGAAAATTGTTATTATGAGTCCTAA
ATCTTAAACACCGATAGAGCATGGATGTTGATGTCAACATCAATTTAAAG
AAGGTCTTTATCAGGGAAAGCCAAATGCATCCATTTCAACAACACAGATC
GTTCAGCAAGTTGCTAATTGTTGTAAAGAAAGATGGTAAGTCCACACATA
GCGTCAGAAGCTTTCATTATCTTTGTATCAAAATTTTCACATACCTTATA
ACACCCACTTCTCACAGACCCGGTAGGGTTTTTTTTCAGCCAGTGAGTAT
AAAAATGTCGGACTGAAACTCGATGGGGATTGATAATCCAATAATTTTAT
GATTGGTGATATCAATTCTTTTGTTTTCAGGTCAGAAAATTCAGTTGGGA
TGGGAAAAATAGCATGATATTTTGCAGTGAGGATGTGGTTATTTGATTAT
TTTTAGTGGAGACAAAAAATGTGGATAATTTTCCATCGGGGACGATATTT
TGGCCAATTGTTGGTTATACCAAATTTAGCGAGTGTACGAAAGGAAATGC
AGGTGTTCTGAAGATGGACCTCAATTCATTTTGATCCATATCGATTTACT
GGGTGAGATTGAATTGTTCTTCCTCTTTTTGGTATTTTTTATACAGAGAC
TTGTTTCAATTGAGCTCTTTCTCTAATCACAAGGATATTAATTTGTGCTC
TTTCCTACAAAAATCTAATTGATTTACTACCGTTATTGTACCTTAACAAT
ATTTTAGAAGCCATGAAACTCTGGGGCATACATTATATAAATTTTACCAA
ATACTAATCAAAGTACTTTAGGGGAGTGAATCACTCTAATCATAAATACT
TTAAACATATAACTAGTTTCTGTCTAGTGCTCGATTGCACAGACCATTAA
CAATTGACAATCCACTTGATTCAACAACTTGATCTAATAAAGTCTTGCAA
GGCCTTCCAGGTTTTGTATAAATTGTCACAGTTTACTGATCGATCAAGTN
TTGAAAAGCAAGAACTGAAGTTAAAACCTGCTAGATAAACAAAGTGTAAG
CCTTTCAAAAATATTACAGCATAAATACTGTGTAAATCTCAACAAATACA
GCAGGTGAGTCCTTCCCCCTTCGCTGTAAAAATTTTGAATGAATCACCAA
CAACGATTATTGAATCAATTATTTCACAGACTATTCGTAGATTTTAATGA
GAGATGTTAAAAAATAAATAAATAAAACTGTCCAGAGTGCACACACTCAC
CAAATCAACTTACAGAAAAACATTCGAAAGTTTCCCGCGCGCGTGTGACN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNGCTAAAGGAAGCAAAAATTCCCGAGTTAAAAAAT
GAAAAATAACTCGGAAAGTTAAAGGAAGCAAAAATTCCCGAGTTAAAAAA
TGGAAAATAACTCGGGAAGTTAAAGGAAGCAAAAATTCCCGAGTTAAAAA
ATGGAAAATAACTCGGGAAGTTAAAGGAAGCAAAAATTCCCGAGTTAAAA
AATGAAAAATAACTCGGAAAGTTAAAGGAAGCAAAAATTCCCGAGTTAAA
AAATGAAAAATGACGTCACTAAATTCCAAAAATGACGTCATAACTCGGGA
TAACTCGGTTTTTTTTTAATTCGGTTTTTTTAACTCGGAAAAAATAACTC
GGGAATTCCGGGCCTCATCGATCAAGGGGCATTCTAATCAGATATTTCAT
AGAGTTATGTGCTGGTTGTTGTGTCAACACTTCCACAGAGGTTGTGCAGT
TGTTCATTACTAATACGATAACGGTAGTCATTCTCACTTTCATTGACGAA
ACGAAAGCCACCTCAAACGATACATCTGAGGAAACCACGGTAGTATCAAT
TGACGGCAAATACAAAACTGAACGGTTGTCGTCTGAAAAATGCACAAAGA
TGACGGAAACAATTCAAGAAAATAATCAATAATCACCATCAATAAACGAC
TTTTGCAGCCCGTCAAAGTGCATCATAAGTGAAGAAAACGCACTAAAAGA
TACCCTACAATGCAGGAAGTGCCACCGTTTAGTCCATTATCTTTGTACAG
AACTGCCACTTTACCAGATCCAGATATACTTGTCATACAAATCAAGAAGT
TTCCAGTGTCAAAACTGTACCAAAATCGCACCGCAGGTAATGGAAAGGTA
TAATTCAAATGAAACATCAAAAATTGAAGGATTCAGAAACGAAATCAAAG
CCTGTGAGAATATAATGAAAAGGCAGGACGAAGAAATAAACCATTTGAAA
GCACAAAGCGTCAATGTTATGGTCGACGAAATGAAAGAAACTATCGACAA
CAGAATAACCACGCTTGAAAAGAAGATTGAAAACATCATCGAAAAGAAAG
AAGAGAAAAGACCAACAATGAGCTACGCTAAAATCACATACAAACACATC
GAGAAAAACATTGGAGATGCGATTCGAAAAGAAAAGCAGGAGGAGCAGCT
GATTCGATCTACAGCACGCAACCTAATTTTTCATGGGATTGATGAATCGA
CAGATGAAACTGAAGAAGAAAAAAATCGAGGACAAGAATTTATCCATGAC
AAAATTTTTGGTAAGCGGCTTCATCTGAGGAATATAAAGATTACCGAGAC
GCAGCGGATCGGGAAATTTACGAAAGAAAGAGAAGATAAAGCGAGATACC
GACCAATTAAAGTCACATTTACGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGC
TTTCCTTACCGAGTGACAGAGGATTTGACCAAAAATGAAAGACAGATAAT
TAAAGAATGGTGTAAGGAAGCCGAAAAAATGAATGCTAAAATCAAGGAAA
ACAACACAAAATGGAAATGGAAAGTCCGGGGGAGCCCGCGAAAAAAACTC
TATTTTAAAAAGATCATTGTAAAGAGTATGAGCGGTTTATAGAGGCCCAT
GTGTCTTCACGGTGGCCTGCAAACCTGTAAAGCTTTATTATTATTATTAT
TATTATTAGTATATATCAAGGCGTTCCATTTGAGCTTTATTGACATTCCA
GTTTTGGCAAGCGTAGGTCAGTGTACTATGAATAAGATTTTTCAGAAATT
TGGCTCTAGTCAGTGAATTTACTGAATGCCAATTGAATTCAGCATTGTCT
ATTTAAAAAGCTTTGATCGCATTTTCTGGGCTTTGGGCTTCTGCAAGAGC
TTCTTCTTCATTTGATATGTATATTTTTTATTATTGAAAATTCAAAATAA
GAATTCAAAACAAACAAAATTAAACCTTTAAAAATGTTATGTTGCTAGGC
GATAATTGTGAAATAGATAGGTTTCGCCCGAGAATTTTATCATGCCCTTG
TGACCTTGTGTCACCCTATTCAGCAACTCTAAAACTCAAGTCTAAAAATA
TTCTAGAATCTAAACAAAACAATCTAAACATTGATATAAAAGTTATTTTA
TAACATTTTGTTGATTTTTGTAAAAGTGTTTTTGGGCGGTTTTGAAACAG
CAGGTCGTATCCTTTTTAGCACCTTGTAGAACTGTTATATTTTGCTACCT
GGTGCTTCTAGTGCGTTAATTATTACCAATATTTATGGAAATGTAGGTTC
CTCATTCATTTTTAGTACCTGTTTAACCTCGGGTTGAATTTTAAGGGGAA
AGAAAAGGCGGAAATGATTTCATTTTGCCAATTTGATTGTTTGAGGGTAT
CAAACTCTTGCATTTTTGAGACTTTCGATAATGAGCCTTAAACTGGAAAG
TCAAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGTTCGATTTTTTT
TTCATTTGGTGTCTTAATAAATGATAGTTGATAGACACAGCAGTAACGAA
GACTTTAATTTTGAGATTAACGTATTTTAGAACATAATGCCCTGATTGAG
TTGATTATCGGCAAGCATCTTTTGAAAGAAGGTCACCATTTTGTTAATTT
TCAGGTTGGCTTTACCGTCGATTGAAAGCAATAAAGCAGTGCCTATTATC
AATAACGACCAGACAAAACCATCTCTTCTGAAACATCATAATGATGGTTC
TAATACCATCACAAAAGAGTTCCCAACAAATGATAGTACTGATGACAAGG
TTTCTTCAAAATCCAACATCTTTACTGAATACGTGAAATATTTACGAGAA
AAAGAAGTGAGGGAGAATGGCTACCTTCAGCAGATTATTTCAACGAACAA
TCCTGTCAATGAACTATCACCACAATCTGGCAATCTTAATGGTATGTGTT
TCTATATTACTGTTTTAAAAATTGATTTCATCGGTCGACCAACGCCAACG
GTCTGCGTTCAAATCAAGTTTTCGTTTGGATTCTATTTTTGAGCGTCATT
TTCTACCCTTCGAGAGCAAAAATCGTCTTCCTTTACGGGCTAGAAATTTG
TCGCCCACCCTCGTAGTGCATTTTAGATGTAATAAAAACACCCCCTTAGT
GGTGCGCCCATACTGTCGGCTATTTTGCCTTGTTTTGTTGCACTTTTCTT
TACGGAATAGATGAAGAACCGCCGCTTGTTTGGACTCAGATAAAATCGAT
CATATGCTTTTTTGGTTTTTATTTTTTCATGCCTTGAAATTTTTAGACTT
AGGGGTTGGCTGAGAGATTTTAATTTTTTTTTACACATACGTATTGCGTC
TAAGTCGTTCCTAAAAAAGGATTAGCGGTGGAAACTTGAAGGGCCTTTTT
TAATTCGTTGTATTTTCGAATAATCTTAATTTGAAGCTCACTGGACCTCT
GTATCCTTAGTGGTTAAGTTTAAAAGGAGAATCTGATCTTGAATTTCGTC
GAGAAGTGGTTCTTTATCTCCTTCTAGATTCTCAAAAATTTACCATACTT
TCACACCGCTTTTTCCGATTGCTGATTGTTTCAAATTTACAAAATTTTAT
GACATGTATAATTCAAAAAGGTCCTTTTTAATGGGCTTGGTTTACTTGTT
TTACCAGATTCCGTTTGTTTTGGGATTCATTCAGTCTTGAAGGAAAAAAT
ATCCAGTCTGAACTGCAGCAGTATTATGCCCACTATACATATCATCTGTT
TCTTTTTATTTCTTTTTCTATTTNCTGAACTGCAGCAGTATTATGCCCAC
TATACGTCATATCATCTGTTTCTTTTTATCTCTTTTTCAAACTCTTCAAT
ATTTTCATTGTTTTCAATTCGGTGTTTATTCAACCGTAACATTCATCTCT
TTTGTTCTTTCTTCATTTTTGCCAACTTTTCAAATTTTTCGTGAGATATT
ATTTTCGGCTATTCTTCAGTTTTCGTTTTTTGTTTTCATTCTTCGAATCA
TTCAATACCTTCAAAAGAATTCCCAAGTTAATCAAGGTACAGTAACTTTT
TTAACTTTTCTCGCGTGAGGTCCTTCTTGTGTGAGTTCTTTGTTCTTACT
GATTTTAAAGTTTTTGATTTCAATCACAGATGAATTCAAATGAAGAAAAA
AGATTGCTGGTATTTTCTGCCACCTGTTTTATACCGAATGGTACCAGCCA
TATTGAATAGAAGAAAAGAAAAAAGAATAAAGGAATATTACCAATGCTAT
CAATTTTCGATTTATTCGAATGTTGAGATTCGAACTCTTTACACATCTAT
CTTCTATAGTTACTAGTTTCATAGCTTTCTTTCTACTTTTAATCGAACAG
TTTTCGTATCATTTGAATACGCATTCGAACCTAATGCACCGTTTTTCTTC
TCGAACTTTTTTTTTCTTCATTAGCAAACCTTAAATGAATCGAATACGTA
TGACGGACTTGTATTTCTCGAAGTGACTTTCGCATCTCGTATTCTTTTGA
ACACTTCTTGTTCTCAAGTTCAGGACCGAACGACTTTAGAGAATATAGAA
TGAAGGCTAAATTTTCAAAAATAGAATTAAAATTTCTATACTAGCAAAGA
CTTTTCTAGTAATTGCTTTACATGACATGAAACTGCCAGTATCAGAGAAA
AGTAAATTTCACCGTCGCTCAATCAATGCAAAGGCTTTTTTAGAAGATTT
TGAATAACATAGGGATCCAGAAAGACAAAAGCTTACAGGCAGTTCTCACT
TATTTTAAAATTCGATTACATGCATAATGTTTTCAAAACCTTCTACATAA
CCTTTTCGTTAGAAGAAATCAAATAAGAAATTTTTCTGTTGCTGATCAAT
GGAACTTAAGGATCTTAAATCCAATATTAACATAAAAATTCTTATGTGTA
TAGATGGCCAATTTATTTATTTTCAATATTGTCTATGTCAAGAGTGTTTG
GGGTGCCTTGGCAATGACAGCCAATTTTACTGATCATTTGCTTAAAAAGT
TCCAAGGAATCTGAAAATGAAAAAAGAATTGTTTTTTCATGTGGTCCAAA
GGTCTAACCCCGAATGAACAGCCAATGTCAATGGAAATCATGTAATATCT
CCTTAACGACCTATTTGTACTGTCCCTTTCTTTTATGTTTTTCATAAGAA
TTATTCAAAGGTTTACTAACGTGTATTTTTTATACTGCAACCTCTTGCAC
AGTGAGCCCTAATACAGTAACACCCCCTTCCAAACTGGTTGAAGAAGAGG
CCAAAAAATATATTTGCTAATAAAGGTGCACTTTAAATTTCATTCAAAAA
ACTCTTCATTTCTAATTCCTGTATGAAATTTTTTTGGAAGCTGAAAAAAT
CTCCTGCTATCAAATTTGAATGCTCAATGAATCGAAAGAAAAATTTGAAT
AAAGTTAAGATGAAACTTGAATAGCATATTGAAAAATTATTTCCCAAAAC
AAAAAATTTATTGTTTTTTCTTTTGAATGTCTTGTCTCATTTCCCCCATA
TTTAGTGTGTGTTTTCGTTGAATGGCCTTGGTCAATTTTGTCAGATCAAA
ATGAAGATGTGATTTTTAATAAGTTCTAAATTAGAAAAAAGGACTTTAGA
AAATTTACTTTGGAGAATGGCAGAATTGGACTTATTCCATACTCTGCTCA
CCTCACCGCCTACCATTGATCCTTTTACACAATTGTACATCAAACTTCTT
GGACAATGGCTTTTAAAGGTAGCTGTTTTGTTTTGGCTGGTCTGGGGGGG
GGTACCTAGGCAAAAGGAGGGTACGGGTATGTGCCGCCCTTAAGGGTCCC
CTTATTGGATCTTCAAAATCCCACTACGGATTGTAAAAATCACCTATTTT
AATTCCATTCCGCCCTAAGGGTTGTAAAAACAGTTCAAATTCCATATCGT
GACCCTCAAAAGCCTGAATTTCTATAAAATAATCCCAATAGTCACAAAAA
TTCGGCTTTTTTTCTCCATTTAGGTCCCTGTAAGGGTCCGTTTTGGTTCC
TATAAGGGCCCGACCACCAAATGTCGGGTGGCACATACCCATCATCCCTC
AAACCTAGTACCCCCCCCCCTAGGTGGCTGGTACATACATACATACATGA
AAGATAAGGGGGACAACAAGCTCTAAGCTCTTTTCTAGTGAACTCTTGTT
TAAGGAATACATTCATGATACTGTTTAGTTTTGTGGAATAGCTAATTGGG
CCATTCCTTTTTATATCTACACAGGCACAGGGTAGATAAACGTTTCCAGG
GGTAAATCCGAAGAGGAATTTCCAGATGGTCTAAGAAAATTTCAGGGTGT
CTACGGACGAAAGCATCCAGCGAGGACCTTTTTTTTAACATCTGTTTCCC
AGGCATAGCCTTCTTGGAAAATTTGATCTGTTGGTTTCAAAAATCTTATT
CCTAGAAATGAAGATCTGTTTCTCCTCAAAACAACAAAACCTAAATTTTT
AATCTCAAAGTATCTTCCCTAGAAAATTTGGTCTGTTTCCACAATTTTCA
AAATTCAAATTTTGATCTGTTCTCCCAAGCTTATAAGGGATATGATATCT
GTTTCCCCCTGCTGGAAATTTCCATCTGTTTATTCCCTTGCTTTTTGTGA
TTGATAAACCGTCAACTGCTCTAACTACTTGGGACTATCTGACAAATAAA
TAATAAACGGCAATTCGGCCACCATTTCACCGAACCTCCAAAGTCATTTG
TTTTGAGTTAATGAACGGCGTACTAAAAAATACACGATTTCTCTTTCGCA
CCGATTAGGCTTTTAAATCTAAATATGAAAAAAATCGGCAGTGGAACACA
TGCGAATGTCTGGAACGAGGAAGACCAAATTAGTGGCAAAACGATGGAGC
GTTTGACGTCACTCGCGCGGCAAGTTACACACTCGTTATTTGTTAATCTT
ATTGGGCGATAGGTGGTTCCGCGGCGGACGTTCTCTAACTCTCCAATCGG
CGTCCGGTTATTCTGATTGAAAACAAAATGGGCACGCTATCAGTGAAAGT
TATCGTGATATGTTATGACAGAAAGTATGATTGATAAACTTGGTGGAGTT
ATCAAAACAAATTTGTTGTCAAAGAGATTTAACAGTAAGTGAAAATACAG
GCCAGAAATCAACAGTCCCATGTTTCGACCAATCGTCCCAAGTTAGAGCA
GTTGACGGTATCTGTTTTGCCCCAGAAAGTTCAATCTGTTTCCAATACAA
TATATTTTTTTTGGAAACAGTTCCCAATTTATTATGTCATCTCCTAGAAA
TATTAATCTGTTTCTCTCTGATGACGTCATCAGCTGGAGCGGGGCAACAG
ATAGTTTTAAAGAAAAGGCCTTTCCTAGAAATACAGATCTGTTTCCCCAT
TTTTCAAAAAAAGCTCTCTCCTGGAAAAGGGAAACAGATATTTGGGCTCG
TTGGCTGCTTCTGTACGGAACCTTGAAAACCTTGAAAATGAACCACCCAA
CCTTAAAAACCTTTAAAACTATCAATTTTCTGGGAAAAACCTTGAAAATC
TCGAAAATCGTTAAAAACATTGAAAACACTTCTTCCTATTCATCCTTTTT
ATCATACAATCTTTTCAATATGGCAGTGTCTGAGTCTAGGTTTTTCTCTA
GAATTGCGAATCTCCATCCCTCTTCTATAGCCTTTCAATGAGCCAGTTTT
TTCATGTTTTCTATCGATTGTCATAACCTGGTTCTACAAGGTTATTCCAG
TATCTCTTATAGGTTCATATTAGTTTTGAGTTTGAATGATAAGAGAAGAG
ATCTTTGAGTGCTAGATTTTTTTCATTCATTACCGTATACTAAATTATGT
TGGTTTTTATATAAAAGTTGGGAGCCGTACAGGGTGGGCAAAAAAGTAAT
GAGACAAAGAACTATTTCTTGAATAACAATAGACCTTATCGGATTTTTTG
ATTTTTCTAAAAAAGCGATGCATTGTGGGATTGTTTCGGTCCTATTACAA
TAGAATTCCCTTGAGGAATTCCGAAGAGATTTCTATTGTAATACTCTCGA
AACAATCTTCTTTTTTTGCCAACTTTCAGCCTAAATGTTCTTATAAACAG
GGTTCTTATAAAATAGAGTATATTACCCTCTATACGCTTAGGATCTACGC
TTACTTTGAGCTTTGCCTTCATTTCGCGGTTCATTAACCTTGAAAGACAA
TAATTTGATCTTAGCATTAATTATTCATGATTCTCGTTAATTATTTGATC
TTTTTCACTAAGGCGACAATCACAAATATCTTCGTTTCGCGTCGCCCGAC
CGACTCTCAAAATTAAGTAGAATTGAGTCGGTGAGTCGGTAAATTTGTCG
GACTTTTTCTGTCAATGACCTTTCCTTCGTTCAAAGATTTTATTATTGCT
GATTTTTTGCGAGCGATTTCTAGCGCATTCGCAGCATTTTGACTTTGTTT
ATCATTACATGCGCCATTTTGGGGTCGGAGGTCACAGTGTTCAAAAATGG
AGGGAAAAATGGAAACCCGAAAATTTTTACGACCGACCGATCGACCGACT
CACTTTTTAGACCCATTGAGGACGCGAAATGAAGATATTTGTGATTGCCG
CCTAATTGATTACATTTACAAATCTTTTAATTATACTTCAACAATAAACA
ATAAACAAAAATAAATATTTTTTCTTTTGTTGATATCGAAAGTTATTACT
TGACCTCTGATCGGTCAAAGGTCATTTTGGCCCCCCTTTGGAGGCTTTTG
AAATGGGCTATTCCATTAAAAAACTATACAAGGGGGTAGACGAACCTTTT
CAAGTTGAAAGAAAATTATTGAAAATGTGTAGTTGCTCCCTGAAAAATGG
CAAAATTTGCAAAAATACCCTTGGAAAAATTCTTTTCATTCCTTAAATTG
AGGATGGACGAACTTAATTAGCCTTTTATCTCCTGGAAATTTTAGAAGAA
CTTTTTACCTCCTTGGAAAAATGAGAAAACACTCCCTAGAAATCTTTCTC
GAATTACCCCCTGGAAATGTTCGTCCACCCCCCTATATAGATTTTTCGGA
AATTATAAAAATACAACCCAATTAAATGATGTGACGTCATCAATCGTATC
ATATATGATACGATCATAACGGCTGCAAAAAAAAGCATGGGTCCTTAAAG
CTAAAAGGAAAAGAAGAAAACAAAAATAAATCCATTATTGAATTGGCTGC
AATGTGCGAATCAGGAGTGTTTTTCACACTTCAGATGAGCAAACAATCTT
ACTTGCAGCATCGACTCTGCTTTTGTTTATGAGTGTGACAAAGTTCATGA
GTTAGAATCAAAGTTATTTGTGAAGATTGGATATGAGGGTTGGACGCAAG
AACAAGAATTTTCTATAACTACACGTTCTTCATTTTTGAAATGTAAGACA
ATTTTTACGCATCTCTCAGTCTACAGGCTGAGACAGACAATGACCTTAAT
TATAATAGGGTAAATTTCAGTAAGCTGTCAGACCAATTTTATAAAAACAA
TGAACCAGGCTTAAAGATTACTATACTATATACCAAAAGAAGAAAATAAT
TTGTGAACGACGCTCAGCCTTGATTCGCTGGAGTTAAAGTATCTTACGGT
ATGGGCTTTATGTAATATAAAAGTGGAGAGTAAACTTAAAATTTGCCCAA
AATAGTAAGGTGAGATCTTAGAGCAGTTTGTGGCCCATAGGGCTAGAGAA
ATACTTTTTATTGCTTAAATTTTGTTGAAAAACTTTTGTTTATGGGCCAC
TCACATATCGATGTTTCACATGTCTAACGTCAAATTGACGCGAAGGGGTG
TGGGGGTCGAGACGCTAAGAAAATCAATCAAAACATCGGATCTTCGGGGC
TGGTTGAATTCTAATTTTTCTAACGTTAAGCCAGATATTTTTTATTTTGT
TAACTTCTCTCGCTAAGTATAGTCACGGTATTTTTCATGGTTTTAGCACA
AAAATTGGTGTCAAGACGAGACGTGCCAATCCATTTTCGAAATTAAAAAA
AAAAAAAAGGTTGCTTGGTTGCATCGTGTAAAATAGATGATATTATCCTC
GCAACTTTTTAATGGTTAATGTGTGAAAAGAACAAATTACGATTTCATCG
ATTATCGGTGGCTGACGCTAAGGGTAGGGGGTTAAAGGTTTTTGACATAG
CGTTGGAATGACACTAGTTATGGGAAAATCGATATGTAAGTGGCCTTTTT
AAAACATCTTATAAAGAAAAATAAGGCCCAAAAACACCGAGAAATAGGAA
TATTTTAAAATCTATAAGAAAATTTAGGCTGAAATATAGGGAAAATAAGG
ACATCATAAGAACATGGGAATAGCCTGAGAATTTAAAAGATTATCTAATC
TTGCTCAAAATTATCTGGATTCATAAGAAACCTTCGTAACTGAAATGCAC
GTTGTTGTTTTCATAAGGAACCTTAACTTGGCTTCGAGCCTGGTGTTCCT
TATATTTCCAGAGAATCTCAGCCTCGAGGTTTCTTATCGAGTTCCTTATT
TACTTAGCTGCTAAGCTTGGACTGATTTGATGCTGTGTTCAACAACTAAC
ATTACATTATACAAAAAAAAGACGTCCATTGAATGTTGTTTCATCAATAT
TTTGATGATATTTTGAACTGTTTTTGTGAATCTGTGCAAGTTCAAGTTTA
ATTCTTACTGTTCATTCACTTGTTTTCTTATCCTCAGCCTAGGCAGTTTC
TTAACAATTCCTTATGTTTTGGACCATTTTCAGTCTCAAGTTCCTTATAA
ACGTGTTCCTTATAAAAAAACGTGTAATTCTGCAAGCTCATTTGGAGAAT
TGTGTTTCGCCCTAATATGCAGACAATATTCACATTTATGAAATCGCGAA
AATTAAGCCGATCAAACGAGCACTGTAATCTCCAGCAGTGCTTGGATTAA
TTTGCCACATTTGCTGCATCAACTTCGGGATCGACTTTCACTGTGCTTAC
ACAACTATGAAAGTTAATTGACCGCAGGAGTATTTCTATGTTGAAGGCAG
ATCAAAGACTTTTTTTTACTGTTGACTACAAAACTACCGTACACGTTTTT
TTTATAAGAACATCCAAAATTTTTGATGCCTTCGGATGTTCTTAACTTTT
TGAGTTTTAAGCCCGGGGGGGGGGGGACTTAGGCAAAAATGGATGATAGG
TATGTGCGGACGGTAAGGGATATACCCCTCATTCGCCAACCCTAGTGTCC
CCCCTCCGGGGGTTTTAAGCCTAAAAATAGTCTTAATATGTTCTTATTCT
TCCTAAGAAATACAGTAGATTGTTTTTGAGTCTGTAAAGCCTTAAAAGGG
CCCTTAAAATGTCCTAAACTTGTTCTTAAGATTTTGGCCATCGAAGCCTT
GTGTTCTTATATAGTTTGTTCTCTTAAAAAAACGTGTATTCTTTTTTTTT
TTATCACTCTGACTTTTTAAATTGGTCTCGCTTATCCGTTTTTTAGTGAA
AAAAAAAGAAGATATTTCAGGCTTTATACCCGATTTTTACTACATAAACC
CACCGTCAAATTATTCGAAATTCAAAAATTCCGGGCTCAGCTTAGTTCTT
AAATTGCTCCTATATATGACGGTTTTGAGCCTCACTGTGCTAGTGTGGAA
TTTTACAGAATCTCCTTTTTCCTCGTAGTAAAATGGTCCTTTCTTTCAAG
GTAATTCAAGTCTCAGCAATTTTTAGTTTAGAGAGCTTATGGGAGTGGTT
TTTTGACATGAAAATTTCATCAATTCATTGAAATAAACGTTTTGTTTTAT
ATTTTGTTTCTCATAAGAGATTGAGCATGATTTTGCTAGAAGAAAGAATT
TGTTTACTCACGTTTTGCAATATATTATAAATAAAACGAAAAATTAAGTG
AAAAAAAAAAAGATGTTCAAGCTCCTTTTCAGCATTTTAGTAAGATAGTG
CGCCAAATTCTCATAAATTTTCCGGGAGAGTTTGCACTATTTTCCGTCTT
GATTAGCCAAGCTACGTCTTGATTTGAGATCTTCGTATGAAAAAGTCGAA
AATATTTTATTAGACCAATTATACTTCAAAACGTAAAACAATTTCCCCTT
CACATGTCAAAAAGAAATCTTTTCCATGTAAAGCTGGTGCAACTTTCAAA
GAAAGACAAAAGAGAACTCCAGCAAACAAATTAATCTGATTGGTTTAAAT
TTCAAAACTCGTGTCCACACCCTTTTTGAGTATAGCTGTATTGTTAAACA
ATGAAAACAAAAAATCTTTTTTTTTTTTTGCGTTTGAAAAATACTACGAC
GAACTCAAAAAATTGTATTTTCACAAGATTTCTCAATTTTGAACTTTTTG
ATTTTCTGTTTTGCTTTTTAGAATTTTCATTGAAGAAAATTTCATTCACC
TATTATAGAATTTCTCTTCTTTAGTTTTAACTACGTAGATTTTATATACG
ATCCTTGTCTACTCTCTTTAGTGCTCGCACAAACTGGCTACAAACAGACG
ACACAACGCTTCATTAATGAGCTACTGGCCGCTGATCAAGCGACATCAAC
ATCTACTACACAACGACAAATTGTTGTCAACAAGCTCAAAAACAAGATGA
CGCTTTTCATGAGCAAACCATACGATACAGGAGGACCCTTATTATCACCC
GTCAACCTTCAAAAAGAATTCATTGCTCTTAAACAGGAACGTGATTCAAA
CGATCGCCAATCGGGATACATCCATGATGACGTCATTATTGGAGGACACC
ATATTGGGGACCATGATAAAGTTCTTTTTCATGACGACATCCGAGATCGT
AATTTATTTGACATGCCGATCGTCACGACCAACGAATGTTCTATAAACTC
TCTCTATCACACTAACGAACCTCAAACACCGACAGGCCCACATAATCACC
ATACAACCCCTAGTTTCGTCACATACCAAATCTCTTCAAACACGAACCAA
TCAAATGGCTGGAACAACCTTATGGATGATTACTCGCATCCTGGAGGCGA
CACGAATGACCTTCACGATTCATCGGAGACTTTCTCTTCTTTCAATGATC
CTGTCTTCACGTTTAAAGACACGGGCGACCAACACAACGCTGATCCAACC
TCGCCACCACACCTTTCAAAACCACATTCGCTTCCAGCTCTTATCCTTAC
TGATAAATCGCCATCTCGTTACAGCGATCATACTTCACCCACAGGTGTTC
CGTTAACGCCCTTGACGCCTCTTGGCGGTGTCGTTCCATTCGGAAGCCCC
CCTCACAACAGTGCTTTCTCTCAACCGACCACTAATCGTGATTTATACAA
AGACTTATGTTACGCGACCAATCGGCAACAAGAATACCCGCCCATCTCAC
CAAATGAAGAAATTCCGCCTCAGCTCCCACCCCCGATGATTCATCATCAG
CAACGAAGCCCGAGTTTCAACGAAATCCTACCGTCCTCTCAAAATCAAGT
TGGTCGTCCAAATAACACTCAAGAAAATGATATTTTCATACAACAACAGA
CTCCTCGAGGAGGCGGTGGCGGGCTTTGTAGTCCTAATGGTCCGCCTACC
CAATACATCAAATTGAATTCGTCTTATCAGCAACCGTGTGGAAATAACAC
AAGTTCAGTTTTAAATAGTTTATACCAACAGGAACATAACATTAACATGC
AATTCGGTGGTAACATGTCAGGAGTTAGTTTCCTAACCACTGGACCCCCA
CCTAATGATAATATCGACATTAGCGCAGGTATGGGACCCATATCGCCGCA
CAACGGTGGCCCATTTATGCCAGAAAAAATCAAAGTTAGTTGTAATGAAG
ACATAGTCAATGATTTGAATTCAAAGAAAGTTGGAAATAAAGGATATTTA
TGTGAGTTGTGTGGGAAGTTGTACACAAGGAAGTACGGACTGAAAATTCA
TATGCGAATCCATACCGGTTTTAAACCTTTACGATGTCAGTATTGTCAAA
AACGTTTTGGAGACCCTTCGAACATGGCTAAACATATTAGACTACACGCT
GTTGGTGATACTCCGTATAAATGCCCTTATTGCGCAAAGGTTTTAGTACG
ACGCCGAGATTTAGAGCGCCACATTAAATCGCGTCATCCGCAGGGGTGAT
GTCTTTCTTGTATATATAAAAGAATTTTATTAGATTTATTGGGGATTTAT
ATTCCCTTGATTTTTTTATTTTTAACCCTTTAAGTGCCGATGTCGTATAT
ATACGACATGGGCTATATAGGAGGGCGAAGCCCTCCTGTAATGCCCAGTT
TGAGTTAGAAATCGTT Coding sequence (CDS) from alignment at scaffold_327:325479..341544- >TCONS_00059440 ID=TCONS_00059440|Name=TCONS_00059440|organism=Clytia hemisphaerica|type=CDS|length=1503bp|location=Sequence derived from alignment at scaffold_327:325479..341544- (Clytia hemisphaerica)
ATGACGCTTTTCATGAGCAAACCATACGATACAGGAGGACCCTTATTATC
ACCCGTCAACCTTCAAAAAGAATTCATTGCTCTTAAACAGGAACGTGATT
CAAACGATCGCCAATCGGGATACATCCATGATGACGTCATTATTGGAGGA
CACCATATTGGGGACCATGATAAAGTTCTTTTTCATGACGACATCCGAGA
TCGTAATTTATTTGACATGCCGATCGTCACGACCAACGAATGTTCTATAA
ACTCTCTCTATCACACTAACGAACCTCAAACACCGACAGGCCCACATAAT
CACCATACAACCCCTAGTTTCGTCACATACCAAATCTCTTCAAACACGAA
CCAATCAAATGGCTGGAACAACCTTATGGATGATTACTCGCATCCTGGAG
GCGACACGAATGACCTTCACGATTCATCGGAGACTTTCTCTTCTTTCAAT
GATCCTGTCTTCACGTTTAAAGACACGGGCGACCAACACAACGCTGATCC
AACCTCGCCACCACACCTTTCAAAACCACATTCGCTTCCAGCTCTTATCC
TTACTGATAAATCGCCATCTCGTTACAGCGATCATACTTCACCCACAGGT
GTTCCGTTAACGCCCTTGACGCCTCTTGGCGGTGTCGTTCCATTCGGAAG
CCCCCCTCACAACAGTGCTTTCTCTCAACCGACCACTAATCGTGATTTAT
ACAAAGACTTATGTTACGCGACCAATCGGCAACAAGAATACCCGCCCATC
TCACCAAATGAAGAAATTCCGCCTCAGCTCCCACCCCCGATGATTCATCA
TCAGCAACGAAGCCCGAGTTTCAACGAAATCCTACCGTCCTCTCAAAATC
AAGTTGGTCGTCCAAATAACACTCAAGAAAATGATATTTTCATACAACAA
CAGACTCCTCGAGGAGGCGGTGGCGGGCTTTGTAGTCCTAATGGTCCGCC
TACCCAATACATCAAATTGAATTCGTCTTATCAGCAACCGTGTGGAAATA
ACACAAGTTCAGTTTTAAATAGTTTATACCAACAGGAACATAACATTAAC
ATGCAATTCGGTGGTAACATGTCAGGAGTTAGTTTCCTAACCACTGGACC
CCCACCTAATGATAATATCGACATTAGCGCAGGTATGGGACCCATATCGC
CGCACAACGGTGGCCCATTTATGCCAGAAAAAATCAAAGTTAGTTGTAAT
GAAGACATAGTCAATGATTTGAATTCAAAGAAAGTTGGAAATAAAGGATA
TTTATGTGAGTTGTGTGGGAAGTTGTACACAAGGAAGTACGGACTGAAAA
TTCATATGCGAATCCATACCGGTTTTAAACCTTTACGATGTCAGTATTGT
CAAAAACGTTTTGGAGACCCTTCGAACATGGCTAAACATATTAGACTACA
CGCTGTTGGTGATACTCCGTATAAATGCCCTTATTGCGCAAAGGTTTTAG
TACGACGCCGAGATTTAGAGCGCCACATTAAATCGCGTCATCCGCAGGGG
TGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059440-exon-scaffold_327-1575043694:341360..341544 | TCONS_00059440-exon-scaffold_327-1575043694:341360..341544 | Clytia hemisphaerica | exon |
| TCONS_00059440-exon-scaffold_327-1575043694:340943..341088 | TCONS_00059440-exon-scaffold_327-1575043694:340943..341088 | Clytia hemisphaerica | exon |
| TCONS_00059440-exon-scaffold_327-1575043694:336704..336990 | TCONS_00059440-exon-scaffold_327-1575043694:336704..336990 | Clytia hemisphaerica | exon |
| TCONS_00059440-exon-scaffold_327-1575043694:325479..327273 | TCONS_00059440-exon-scaffold_327-1575043694:325479..327273 | Clytia hemisphaerica | exon |
| TCONS_00059440-exon-scaffold_327-1510915933:341360..341544 | TCONS_00059440-exon-scaffold_327-1510915933:341360..341544 | Clytia hemisphaerica | exon |
| TCONS_00059440-exon-scaffold_327-1510915933:340943..341088 | TCONS_00059440-exon-scaffold_327-1510915933:340943..341088 | Clytia hemisphaerica | exon |
| TCONS_00059440-exon-scaffold_327-1510915933:336704..336990 | TCONS_00059440-exon-scaffold_327-1510915933:336704..336990 | Clytia hemisphaerica | exon |
| TCONS_00059440-exon-scaffold_327-1510915933:325479..327273 | TCONS_00059440-exon-scaffold_327-1510915933:325479..327273 | Clytia hemisphaerica | exon |
| TCONS_00059440-exon-scaffold_327-1491911889:341360..341544 | TCONS_00059440-exon-scaffold_327-1491911889:341360..341544 | Clytia hemisphaerica | exon |
| TCONS_00059440-exon-scaffold_327-1491911889:340943..341088 | TCONS_00059440-exon-scaffold_327-1491911889:340943..341088 | Clytia hemisphaerica | exon |
| TCONS_00059440-exon-scaffold_327-1491911889:336704..336990 | TCONS_00059440-exon-scaffold_327-1491911889:336704..336990 | Clytia hemisphaerica | exon |
| TCONS_00059440-exon-scaffold_327-1491911889:325479..327273 | TCONS_00059440-exon-scaffold_327-1491911889:325479..327273 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_327 | supercontig | scaffold_327:325479..341544 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
BLAST of TCONS_00059440 vs. Swiss-Prot (Human)
Match: PRD13 (PR domain zinc finger protein 13 OS=Homo sapiens GN=PRDM13 PE=2 SV=2) HSP 1 Score: 145.206 bits (365), Expect = 6.550e-36 Identity = 62/83 (74.70%), Postives = 73/83 (87.95%), Query Frame = 3
Query: 1989 GYLCELCGKLYTRKYGLKIHMRIHTGFKPLRCQYCQKRFGDPSNMAKHIRLHAVGDTPYKCPYCAKVLVRRRDLERHIKSRHP 2237
G+LC CGKLY+RKYGLKIHMR HTG+KPL+C+ C + FGDPSN+ KHIRLHA G+TPY+C +C KVLVRRRDLERH+KSRHP
Sbjct: 572 GHLCLYCGKLYSRKYGLKIHMRTHTGYKPLKCKVCLRPFGDPSNLNKHIRLHAEGNTPYRCEFCGKVLVRRRDLERHVKSRHP 654
The following BLAST results are available for this feature:
|
