TCONS_00059440-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00059440-protein
Unique NameTCONS_00059440-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length500

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00059440-protein ID=TCONS_00059440-protein|Name=TCONS_00059440-protein|organism=Clytia hemisphaerica|type=polypeptide|length=500bp
MTLFMSKPYDTGGPLLSPVNLQKEFIALKQERDSNDRQSGYIHDDVIIGG
HHIGDHDKVLFHDDIRDRNLFDMPIVTTNECSINSLYHTNEPQTPTGPHN
HHTTPSFVTYQISSNTNQSNGWNNLMDDYSHPGGDTNDLHDSSETFSSFN
DPVFTFKDTGDQHNADPTSPPHLSKPHSLPALILTDKSPSRYSDHTSPTG
VPLTPLTPLGGVVPFGSPPHNSAFSQPTTNRDLYKDLCYATNRQQEYPPI
SPNEEIPPQLPPPMIHHQQRSPSFNEILPSSQNQVGRPNNTQENDIFIQQ
QTPRGGGGGLCSPNGPPTQYIKLNSSYQQPCGNNTSSVLNSLYQQEHNIN
MQFGGNMSGVSFLTTGPPPNDNIDISAGMGPISPHNGGPFMPEKIKVSCN
EDIVNDLNSKKVGNKGYLCELCGKLYTRKYGLKIHMRIHTGFKPLRCQYC
QKRFGDPSNMAKHIRLHAVGDTPYKCPYCAKVLVRRRDLERHIKSRHPQG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037413XLOC_037413Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00059440TCONS_00059440Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 445..467
e-value: 0.0017
score: 27.6
coord: 474..497
e-value: 5.4E-4
score: 29.3
coord: 417..439
e-value: 0.0034
score: 26.6
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 447..467
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 419..439
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 476..497
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 445..472
score: 10.201
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 417..444
score: 14.877
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 474..500
score: 10.055
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 454..497
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 415..467
NoneNo IPR availableGENE3D3.30.160.60coord: 264..427
e-value: 1.3E-8
score: 34.3
NoneNo IPR availableGENE3D3.30.160.60coord: 428..456
e-value: 3.7E-16
score: 58.5
NoneNo IPR availableGENE3D3.30.160.60coord: 457..497
e-value: 5.8E-13
score: 48.5
NoneNo IPR availablePFAMPF00096zf-C2H2coord: 417..439
e-value: 3.6E-4
score: 20.7
coord: 474..497
e-value: 3.0E-4
score: 21.0
coord: 446..467
e-value: 7.3E-5
score: 22.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 114..178
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 300..326

Blast
[Close]
BLAST of TCONS_00059440-protein vs. Swiss-Prot (Human)
Match: PRD13 (PR domain zinc finger protein 13 OS=Homo sapiens GN=PRDM13 PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.307e-37
Identity = 62/83 (74.70%), Postives = 73/83 (87.95%), Query Frame = 0 
Query:  416 GYLCELCGKLYTRKYGLKIHMRIHTGFKPLRCQYCQKRFGDPSNMAKHIRLHAVGDTPYKCPYCAKVLVRRRDLERHIKSRHP 498
            G+LC  CGKLY+RKYGLKIHMR HTG+KPL+C+ C + FGDPSN+ KHIRLHA G+TPY+C +C KVLVRRRDLERH+KSRHP
Sbjct:  572 GHLCLYCGKLYSRKYGLKIHMRTHTGYKPLKCKVCLRPFGDPSNLNKHIRLHAEGNTPYRCEFCGKVLVRRRDLERHVKSRHP 654
The following BLAST results are available for this feature:
BLAST of TCONS_00059440-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRD131.307e-3774.70PR domain zinc finger protein 13 OS=Homo sapiens G... [more]
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