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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059418 ID=TCONS_00059418|Name=TCONS_00059418|organism=Clytia hemisphaerica|type=transcript|length=3454bpRun BLAST on NCBI protein sequence of TCONS_00059418-protein >TCONS_00059418-protein ID=TCONS_00059418-protein|Name=TCONS_00059418-protein|organism=Clytia hemisphaerica|type=polypeptide|length=846bp MAESWKRKTNGSVFKNTLYKQWGIINTWDCYSVSKASKNLIQRLKRHKVLRun BLAST on NCBI transcript from alignment at scaffold_327:404504..415268+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059418 ID=TCONS_00059418|Name=TCONS_00059418|organism=Clytia hemisphaerica|type=transcript|length=10765bp|location=Sequence derived from alignment at scaffold_327:404504..415268+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_327:404504..415268+ >TCONS_00059418 ID=TCONS_00059418|Name=TCONS_00059418|organism=Clytia hemisphaerica|type=CDS|length=22869bp|location=Sequence derived from alignment at scaffold_327:404504..415268+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00059418 vs. Swiss-Prot (Human)
Match: DCAF6 (DDB1- and CUL4-associated factor 6 OS=Homo sapiens GN=DCAF6 PE=1 SV=1) HSP 1 Score: 307.76 bits (787), Expect = 1.171e-88 Identity = 172/336 (51.19%), Postives = 222/336 (66.07%), Query Frame = 2
Query: 299 KNLIQRLKRHKVLDDHTGCVNTVXXXXXXXXXXXXXXXXXXNIYDSYSTQLVHSIKSGHTANIFSAKFLPCTSDTKIVSCAGDGMLQYNIIGTEYGQN---PFNCHSGTTYEVLVTPGDPNSFLSCGEDGTVRLFDLRTKTKCNCQECAEDILIDAKHAVTSVSINPMLPYHLAIGCKDSFVRVFDRRTLGTSLDTRSVNRNRGWMPGLFCKFKPSTFKQDSNCRVTSLQYSNDGNDLLVSYCSDYIYLFTVREESSKVDQVSTNHQEELTDPS-ESLTDKL--PPAKRLRLRGDWSDTGPNARPDT----DEEDSPEQNIMQRMSEFFSRWIEGA 1276
+ IQRLK L+ H GCVNT+ W+D+G +LSGSDD L I + YS +++ +I+SGH ANIFSAKFLPCT+D +IVSC+GDG++ Y + + N F CH GTTYE++ P DP +FLSCGEDGTVR FD R KT C ++C +DILI+ + A TSV+I P +PY+LA+GC DS VR++DRR LGT R G+ +F PS S CRVTSL YS DG ++LVSY SDYIYLF ++++++ EL PS E ++L PP KRLRLRGDWSDTGP ARP++ D E SP ++MQRMS+ SRW E A
Sbjct: 35 REFIQRLKLEATLNVHDGCVNTICWNDTGEYILSGSDDTKLVISNPYSRKVLTTIRSGHRANIFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQDAETNRQCQFTCHYGTTYEIMTVPNDPYTFLSCGEDGTVRWFDTRIKTSCTKEDCKDDILINCRRAATSVAICPPIPYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRG---TTGMVARFIPSHLNNKS-CRVTSLCYSEDGQEILVSYSSDYIYLFDPKDDTAR----------ELKTPSAEERREELRQPPVKRLRLRGDWSDTGPRARPESERERDGEQSPNVSLMQRMSDMLSRWFEEA 356 HSP 2 Score: 218.009 bits (554), Expect = 1.554e-58 Identity = 103/182 (56.59%), Postives = 138/182 (75.82%), Query Frame = 2
Query: 2153 GTRYTM---ERQHAASKIQSFIRIHREKQK--EIERANARKPNHMYTPKEKIMYRGHRNARTMIKEANFWGDDFVLSGSDCGRVFIWDRHTAELVMLLEGDRHVVNCVQPHPFDPVLATSGIDHDIKIWAPLAE-KPATLDHAEDIMKRNERMLEDSRDTITVPAAFVLRMFASLGSIRRNR 2680
G RY +R+ A ++IQ F R +E+++ E++ N R+P K++Y+GHRN+RTMIKEANFWG +FV+SGSDCG +FIWDRHTAE +MLLE D HVVNC+QPHPFDP+LA+SGID+DIKIW+PL E + A++++ RNE MLE++R+TITVPA+F+LRM ASL IR +R
Sbjct: 666 GARYRAGPGDRRSAVARIQEFFRRRKERKEMEELDTLNIRRP------LVKMVYKGHRNSRTMIKEANFWGANFVMSGSDCGHIFIWDRHTAEHLMLLEADNHVVNCLQPHPFDPILASSGIDYDIKIWSPLEESRIFNRKLADEVITRNELMLEETRNTITVPASFMLRMLASLNHIRADR 841 The following BLAST results are available for this feature:
BLAST of TCONS_00059418 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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