TCONS_00059417 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059417
Unique NameTCONS_00059417
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1543

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059417 ID=TCONS_00059417|Name=TCONS_00059417|organism=Clytia hemisphaerica|type=transcript|length=1543bp
TAAAATTTAGCGATTCTTATCCACACACACACAGTCTTTCTTCATTCGTG
GTGAAAttcttattctttttaattgaattttttatttctattttatagAT
TGTGTTTCAATTTTACCTTTCTGTGGTGTTCTATgctaacattttttttt
gacattgttCAAGTTTTCAAATAATTATGGGTTGTGATGGAGGAACAATC
CCAAAAAGACATGAACTCGTCAAAACGGCAAAGCGACCTGAACAGAAGGA
TAAAGACATGGATAGAAAAGCAAAATGGTCTACTTGTACAATCAGCCAAC
AACCATTATCAAGTCCTGTTGTTGCTTGCGAACTAGGGAAGCTTTACAGC
AAAGAATCCAttatagaatttcttttggatcGATCAATATGTGAAACAGC
AAACCACATCAGGAATTTGAAAGATGTCAAAACACTCAAACTTACTCCAA
ACGCTGGTTTTGATTCAAAAGCATCCGGAACAGCAAATGAATATTATGAT
ACACAAAGTGCACGCTTTGTTTGCCCGGTTGTAGGCATTGAAATGAATGG
AAAGTACAAGTTTTACACATTGTGGAGCTGTGGCTGTGTTCTTTCTGAAA
GAGCATTCAAGGAGGTAGAATCTGAAACTTGCCATAACTGCGgagaaaaa
tttgataaagatgATGTCATTGTTTTGAATGCAGAGGgtgaagatttgga
aaaaatggaaacAAATATGAAGGAGAGAcgagagaaaatgaaaaaggcaa
aaaagctaaagaaagaaaagagtAAAGAGAAAAGGAAAGCAGAAAATGGT
GTACATGAGTTTGCTGTCCCACAGAAGCTGAGTAATGCTAAAACTGATGA
TAAACAACGTCCTGCCAAAAAGCCTAAATTATCATCTGAAGTTACTGATA
CAAAATCTAAAATCAATGGTAGCGGCAAAGATGTTCCAGCCAAAAAGGCT
AAAAGTTCCAAATCCAAGGAAGATAAAGTTGATATCAAGCAATCGAAAGT
TTACAAGAACTTATTCACCTCTAGTGAAAAGAAGAATGGTAAAGATAATC
AGGCCCATTGGGTTACATACAATCCCTATCATTTGTAAATATTCATTTAA
TGTACATGATGTGTATACAGCTTTACACATTGActattttttattgcttt
gaAGTTTTAAAGTTTATTCGATTGATTAATACGAACTTTTAAAAGATGGA
GTTCTCCAAAGCTAATGTCTCATCTGCCATGATCTCACAAagagaatatt
tttttcctttaaagtggtgatttttattttaatagtatttaacttaaccc
tattcatactaggcttttaggggcggttcagaactaggggggggcttttc
ctgtaccaccccttaacttttgatctagtgggtctttttggatgaaattt
ggcacaaaagatccttgtgacgtaaggtaacttttggcaaaaaaactttt
tgatgacgtcactcatcatgcccaaagtgagcaaaaaccgaaaatttcct
ttgttcttataaatagctattgtattctaacaaaggctttaga
Run BLAST on NCBI

protein sequence of TCONS_00059417-protein

>TCONS_00059417-protein ID=TCONS_00059417-protein|Name=TCONS_00059417-protein|organism=Clytia hemisphaerica|type=polypeptide|length=303bp
MGCDGGTIPKRHELVKTAKRPEQKDKDMDRKAKWSTCTISQQPLSSPVVA
CELGKLYSKESIIEFLLDRSICETANHIRNLKDVKTLKLTPNAGFDSKAS
GTANEYYDTQSARFVCPVVGIEMNGKYKFYTLWSCGCVLSERAFKEVESE
TCHNCGEKFDKDDVIVLNAEGEDLEKMETNMKERREKMKKAKKLKKEKSK
EKRKAENGVHEFAVPQKLSNAKTDDKQRPAKKPKLSSEVTDTKSKINGSG
KDVPAKKAKSSKSKEDKVDIKQSKVYKNLFTSSEKKNGKDNQAHWVTYNP
YHL
Run BLAST on NCBI

transcript from alignment at scaffold_327:396859..402692+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059417 ID=TCONS_00059417|Name=TCONS_00059417|organism=Clytia hemisphaerica|type=transcript|length=5834bp|location=Sequence derived from alignment at scaffold_327:396859..402692+ (Clytia hemisphaerica)
TAAAATTTAGCGATTCTTATCCACACACACACAGTCTTTCTTCATTCGTG GTGAAAttcttattctttttaattgaattttttatttctattttatagAT TGTGTTTCAATTTTACCTTTCTGTGGTGTTCTATgctaacattttttttt gacattgttCAAGTTTTCAAATAATTATGGGTTGTGATGGAGGAACAATC CCAAAAAGACATGAACTCGTCAAAACGGCAAAGCGACCTGAACAGAAGGA TAAAGACATGGATAGAAAAGCAAAATGGTCTACTTGTACAATCAGCCAAC AACCATTATCAAGTCCTGTTGTTGCTTGCGAACTAGGGAAGCTTTACAGG TATATTTTGTAAATGTGTTGGTACACctcatcggaaattccacaaaaaca agGCCGTTTGTAAAAAATTGTTCGGTTCCCGTCACCCGACCAACCGTGAT TTCTACTGAAAAATTAGAGTCGGAGAGTCAGAAACAATTTTTCCTGACAG CTGAAACTCCACCATCACCCTCCATGTTTTCTTTTCTGAGAGAAAGAGCT AGAGCAAACGCTAATCTAACCTCCAAGCAGGTCTTGAATGCGGAATCTCA TCCCACGCATGCGCTCTAATAAAAGGGATGGAACCGCAGGATTATATGCC TTAGCAATGATGATCGGTTATGAGACGCTAATCTCAGCCAAAAAAACAAT TCGAAACCCGTTAATTCCGTTTTCATCCCGATTttcatgttcaatttttc attgcgGACCATAtaagcatcaaaacaaaccagcgGAGCTTTTGTGAAGT GAAAAAGAGGCTTAGGGCGATCGAACGTCCGTTTACCGCccttttctaag gaaaatttcCTCCTCTCGGACTGTTTCgttcaaacagaaaatatttttct accgaccgaccgaccgacctaCTTTTTTATGGTTGggatgacgggaacca aggGATTTTTTACGAACAGCCCAATCACGCTAAAATGGATCTGTTGAAAT TGGGAGGCAGCCCTGTGAATCCAGGTCGGCATTCCGCAATGCCGACCTGA AAGCCGACGTAACTTGAGCTGAAGTCAGCTTTTATTTGCAGACGTAATTT ACACTCTAAGTCGGCGTGccgacaaaagaaatgttttgggttGGCAAAGC CGacataaagaggaaaaatattatttgttaggttaatctaattgtgttat catttgataacacatgataatcgagcctcattccattctctttataaaac ataaaaCTTAATAACACAATTATAGAGCAGCTGAATTTGTTAGTTCGTTA ATTTTCTTCCTATTTTGTCTTTGACGACCTAAACAAGCTTCTTAGGacgg ctttgccgacctaaaatgacTTTGCCGACCTACGGCCGGTTTTGGTCGGC ACTTGAGTGCCGAtatgattttgtctgaattcacagggctggggaggtaa acataaatggtAGCGCGAGTAGCGCTAAAAGTTCCTGCGTAAAACAAGAT AATTCATTTGCTTATATCTGGCTTGTTTAcagtgagtggtcctaaatccc acagccctgcctaaatccaacCTCCCAAATAAccgctatgaaaaaaattc tatgtttacaaagattccctctccaagttgaacaaaaaactatattgcaa gaaatctcgaaacaaaacatctaacaagacgactaaaatttcaagatgtc aattaatgtgataagAAAAGTGTTAGTTGTAATAATAATTACCTCTATAA TTCTGAATCtgtgctcgtgtttaaaacgttaacaattttgtaattagaaa ttatgtttttgtataaaaagcagttaatgttttggttcaattggttcagt gtaaattcaaatctctcagtttagttgacactttggtatcttcatcgCAT CACagtgaaaggtttgtttttattttagtttgtatctttgaaagacccca tcggatttaggcagggctgtcggatttaggaccactcacagtataccgtg agattgggtaacttgcatcagtggaggctaacatgcatatccctcaaatg aaagacctggctggtcattaaaatacaaatttaaaacaaaacaaaaatgg tagagtagagctgcgagcggagctgtgtaattgtattttaatgaccagcc aggttattcatttgagggctatgcatgttagcctccactgatgcaagtta cccaatctcacggtatgttcctaaaaatacactgaatttgaaaaaaacga acaaaacaaagctttcaagatgctagcagaagcttaaaaaagagaaaaac aacaacttcggtggttcttcagttgatttggaggctcttttggcatcaat attttgggtgttttttaaggctttttgcctgaaaactgCAATATCGcgct ttgtttacctcccaaaaattgtttttttctcaacCCCCTTATTTAGGAGA GACAAGAGCGACTCACTTTCTGTTAGACCCGCGTTTTGACCGCGCTTAAA CGCGTTTCTTAAATATGGCCCGATctatattattacttttcacgaaATTC TCATGATGTAGATAGGCCTTTAGACTGATAGACCCTAACCATCCTAGGTC CACCAAACATAAGCAGAACTCAACCTAATTTTGCTAGAAGGGAGAAAGTT CAAAACTTGCACAAAATGATGGGAAGGCCAAAGATTaacaaacaaagaaa gaaaagtctcctagttaagagaaagaaatctcctacttaagagaccttct cttaaatagagtatATCTCTTATTTAGGGTATAATCCTCTACTGGCAGGG AGggtttttaaacaatttttttaactgCTCTaaaccagacggtactaatc aaaCGTTTGATAGTGATTGAAGTAACCAATAATGGAGAGGTGCaataatg ataaataataaTCAGTCTGTCGCAAAAAGGTTTCATATTAAAAAAACTTA GTATCCCtatacaaaagttgtcttttttatTTCCCAAACATTTCGTTTTA CAATGTGATTACTCTTGCggtcagtcgggttcaacatatATACACGTGTG ACTAGTCAAGTGACTGAAGTGGTTACTAAAACAACACAGGGACAAGTGTC TAAGCAACACAGATTATTTTTAAAGTAAACCAGCCGTATTAATTGTATAa agatccagactccacctcaattcgcaagttcctagcaaaataagagccca ataagagacactctgataaaactccaaaagagacagggttgtaagcttta accctattagccccaggggtgGGTAGAATCTagcacgctggagttctttt gtgtatatctcgaaaaaaaaattttaaacgacttgaaactttctgactct TTACAAAATTTTACTAAGAGTACTTGTACAAATCTTTAGGGTCATATAGG Tcctccagatcaggttttatgactttattgtgaaacatgacataaaaccc aacTAAAATCgctgaaaactcaaaattttaaagtgctgataacttctgaa ctatattcaatcattttcaaattttgacacgtgataggcattgacaatat aaatttgaaaaataaaaaaaaaattaaaaattatgacatcatcattttat gacgtcatcaatttttaaaaattttactcatcttcagcataaattttaag aaaaaatcttcattgaaAATGCAAAACCGACAATTATATTGAATTATCTT TCAGAATCTCTAAACAGaatttaaatatctttattggttcaactgtaata gacatttttgtaaaccatatatttgggcttgtttccgacaggtggaaatt ttggaatgacgtcattggtttttgaatgacgtcatcaattttttttcttt ctggaattttgtgtcatgatggagaacatctgtaccaaatttcatggcca tagcagCTCTCCCAGATCAAAAATAATTGAGGATGGTactggtagattct acccccctggggatacaataATCTAAAAAGCTTGGGGTTAATAGGATTAA AAggacattaaaaaagaaaattgaatggTGGAAAAGCTATTTTTTATCTC TACTCTAAATTAATCTTGGTGAGAATGTCAATAGTTACACACGTGTATAG AGTCTGTAGCATTTTGTGGAAATACAAATCTAGTTTTCAATATCAGTGAA AAAGGTCCTGTATTTCTTTTGCCATTGTAGttataatgaaaaatttatgt atcatgaaaatttgaaagcttATTTAATACTTTACAGCAAAGAATCCAtt atagaatttcttttggatcGATCAATATGTGAAACAGCAAACCACATCAG GAATTTGAAAGATGTCAAAACACTCAAACTTACTCCAAACGCTGGTTTTG ATTCAAAAGCATCCGGAACAGCAAATGAATATTATGATACACAAAGTGCA CGCTTTGTTTGCCCGGTTGTAGGTTAGAACTTTAATTCTGTTAAATCTTT ACGAAGTTTCTATTTATAAGATGAATTTTCAGACAAAAGCTTTTTTTGCG TTGTTTTAGGAAATAAAAAATCCACTGCTAAAAAATTAGCtggctttttt ttcaaatagcaAATTTCTGAAAGGCTGAAAGAGCAACAATAGGTTAATTT AATTCATCTTTAAAGATGAGAATGGATCAGATTTTTATTCCATCAAGTca gatttgttttttttgataTTCTGACACAAAAATGTTTCTGTAAAATTTCC TTACTAATACGTAATAGTAGCACTCATTGGAAGATCTAGCCTAGTAGTTT TCAAAGAACAAGCACAGTTATTACAATGTAGCTATACTGATTAATAACAA TAGCCAGCTATTCTTTTCATTACAGGCATTGAAATGAATGGAAAGTACAA GTTTTACACATTGTGGAGCTGTGGCTGTGTTCTTTCTGAAAGAGCATTCA AGGAGGTAGAATCTGAAACTTGCCATAACTGCGgagaaaaatttgataaa gatgATGTCATTGTTTTGAATGCAGAGGgtgaagatttggaaaaaatgga aacAAATATGAAGGAGAGAcgagagaaaatgaaaaaggcaaaaaagctaa agaaagaaaagagtAAAGAGAAAAGGAAAGCAGAAAATGGTGTACATGAG TTTGCTGTCCCACAGAAGCTGAGTAATGCTAAAACTGATGATAAACAACG TCCTGCCAAAAAGCCTAAATTATCATCTGAAGTTACTGATACAAAATCTA AAATCAATGGTAGCGGCAAAGATGTTCCAGCCAAAAAGGCTAAAAGTTCC AAATCCAAGGAAGATAAAGTTGATATCAAGCAATCGAAAGTTTACAAGAA CTTATTCACCTCTAGTGAAAAGAAGAATGGTAAAGATAATCAGGCCCATT GGGTTACATACAATCCCTATCATTTGTAAATATTCATTTAATGTACATGA TGTGTATACAGCTTTACACATTGActattttttattgctttgaAGTTTTA AAGTTTATTCGATTGATTAATACGAACTTTTAAAAGATGGAGTTCTCCAA AGCTAATGTCTCATCTGCCATGATCTCACAAagagaatatttttttcctt taaagtggtgatttttattttaatagtatttaacttaaccctattcatac taggcttttaggggcggttcagaactaggggggggcttttcctgtaccac cccttaacttttgatctagtgggtctttttggatgaaatttggcacaaaa gatccttgtgacgtaaggtaacttttggcaaaaaaactttttgatgacgt cactcatcatgcccaaagtgagcaaaaaccgaaaatttcctttgttctta taaatagctattgtattctaacaaaggctttaga

Coding sequence (CDS) from alignment at scaffold_327:396859..402692+

>TCONS_00059417 ID=TCONS_00059417|Name=TCONS_00059417|organism=Clytia hemisphaerica|type=CDS|length=2736bp|location=Sequence derived from alignment at scaffold_327:396859..402692+ (Clytia hemisphaerica)
ATGGGTTGTGATGGAGGAACAATCCCAAAAAGACATGAACTCGTCAAAAC
GGCAAAGCGACCTGAACAGAAGGATAAAGACATGGATAGAAAAGCAAAAT
GGTCTACTTGTACAATCAGCCAACAACCATTATCAAGTCCTGTTGTTGCT
TGCGAACTAGGGAAGCTTTACAGCAAAGAATCCAttatagaatttctttt
ggatcGATCAATATGTGAAACAGCAAACCACATCAGGAATTTGAAAGATG
TCAAAACACTCAAACTTACTCCAAACGCTGGTTTTGATTCAAAAGCATCC
GGAACAGCAAATGAATATTATGATACACAAAGTGCACGCTTTGTTTGCCC
GGTTGTAGGCATTGAAATGAATGGAAAGTACAAGTTTTACACATTGTGGA
GCTGTGGCTGTGTTCTTTCTGAAAGAGCATTCAAGGAGGTAGAATCTGAA
ACTTGCCATAACTGCGgagaaaaatttgataaagatgATGTCATTGTTTT
GAATGCAGAGGgtgaagatttggaaaaaatggaaacAAATATGAAGGAGA
GAcgagagaaaatgaaaaaggcaaaaaagctaaagaaagaaaagagtAAA
GAGAAAAGGAAAGCAGAAAATGGTGTACATGAGTTTGCTGTCCCACAGAA
GCTGAGTAATGCTAAAACTGATGATAAACAACGTCCTGCCAAAAAGCCTA
AATTATCATCTGAAGTTACTGATACAAAATCTAAAATCAATGGTAGCGGC
AAAGATGTTCCAGCCAAAAAGGCTAAAAGTTCCAAATCCAAGGAAGATAA
AGTTGATATCAAGCAATCGAAAGTTTACAAGAACTTATTCACCTCTAGTG
AAAAGAAGAATGGTAAAGATAATCAGGCCCATTGGGTTACATACAATCCC
TATCATTTGTAAATGGGTTGTGATGGAGGAACAATCCCAAAAAGACATGA
ACTCGTCAAAACGGCAAAGCGACCTGAACAGAAGGATAAAGACATGGATA
GAAAAGCAAAATGGTCTACTTGTACAATCAGCCAACAACCATTATCAAGT
CCTGTTGTTGCTTGCGAACTAGGGAAGCTTTACAGCAAAGAATCCAttat
agaatttcttttggatcGATCAATATGTGAAACAGCAAACCACATCAGGA
ATTTGAAAGATGTCAAAACACTCAAACTTACTCCAAACGCTGGTTTTGAT
TCAAAAGCATCCGGAACAGCAAATGAATATTATGATACACAAAGTGCACG
CTTTGTTTGCCCGGTTGTAGGCATTGAAATGAATGGAAAGTACAAGTTTT
ACACATTGTGGAGCTGTGGCTGTGTTCTTTCTGAAAGAGCATTCAAGGAG
GTAGAATCTGAAACTTGCCATAACTGCGgagaaaaatttgataaagatgA
TGTCATTGTTTTGAATGCAGAGGgtgaagatttggaaaaaatggaaacAA
ATATGAAGGAGAGAcgagagaaaatgaaaaaggcaaaaaagctaaagaaa
gaaaagagtAAAGAGAAAAGGAAAGCAGAAAATGGTGTACATGAGTTTGC
TGTCCCACAGAAGCTGAGTAATGCTAAAACTGATGATAAACAACGTCCTG
CCAAAAAGCCTAAATTATCATCTGAAGTTACTGATACAAAATCTAAAATC
AATGGTAGCGGCAAAGATGTTCCAGCCAAAAAGGCTAAAAGTTCCAAATC
CAAGGAAGATAAAGTTGATATCAAGCAATCGAAAGTTTACAAGAACTTAT
TCACCTCTAGTGAAAAGAAGAATGGTAAAGATAATCAGGCCCATTGGGTT
ACATACAATCCCTATCATTTGTAAATGGGTTGTGATGGAGGAACAATCCC
AAAAAGACATGAACTCGTCAAAACGGCAAAGCGACCTGAACAGAAGGATA
AAGACATGGATAGAAAAGCAAAATGGTCTACTTGTACAATCAGCCAACAA
CCATTATCAAGTCCTGTTGTTGCTTGCGAACTAGGGAAGCTTTACAGCAA
AGAATCCAttatagaatttcttttggatcGATCAATATGTGAAACAGCAA
ACCACATCAGGAATTTGAAAGATGTCAAAACACTCAAACTTACTCCAAAC
GCTGGTTTTGATTCAAAAGCATCCGGAACAGCAAATGAATATTATGATAC
ACAAAGTGCACGCTTTGTTTGCCCGGTTGTAGGCATTGAAATGAATGGAA
AGTACAAGTTTTACACATTGTGGAGCTGTGGCTGTGTTCTTTCTGAAAGA
GCATTCAAGGAGGTAGAATCTGAAACTTGCCATAACTGCGgagaaaaatt
tgataaagatgATGTCATTGTTTTGAATGCAGAGGgtgaagatttggaaa
aaatggaaacAAATATGAAGGAGAGAcgagagaaaatgaaaaaggcaaaa
aagctaaagaaagaaaagagtAAAGAGAAAAGGAAAGCAGAAAATGGTGT
ACATGAGTTTGCTGTCCCACAGAAGCTGAGTAATGCTAAAACTGATGATA
AACAACGTCCTGCCAAAAAGCCTAAATTATCATCTGAAGTTACTGATACA
AAATCTAAAATCAATGGTAGCGGCAAAGATGTTCCAGCCAAAAAGGCTAA
AAGTTCCAAATCCAAGGAAGATAAAGTTGATATCAAGCAATCGAAAGTTT
ACAAGAACTTATTCACCTCTAGTGAAAAGAAGAATGGTAAAGATAATCAG
GCCCATTGGGTTACATACAATCCCTATCATTTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037403XLOC_037403Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059417-proteinTCONS_00059417-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059417-exon-scaffold_327-1491911889:396859..397207TCONS_00059417-exon-scaffold_327-1491911889:396859..397207Clytia hemisphaericaexon
TCONS_00059417-exon-scaffold_327-1510915933:396859..397207TCONS_00059417-exon-scaffold_327-1510915933:396859..397207Clytia hemisphaericaexon
TCONS_00059417-exon-scaffold_327-1575043694:396859..397207TCONS_00059417-exon-scaffold_327-1575043694:396859..397207Clytia hemisphaericaexon
TCONS_00059417-exon-scaffold_327-1491911889:401096..401280TCONS_00059417-exon-scaffold_327-1491911889:401096..401280Clytia hemisphaericaexon
TCONS_00059417-exon-scaffold_327-1510915933:401096..401280TCONS_00059417-exon-scaffold_327-1510915933:401096..401280Clytia hemisphaericaexon
TCONS_00059417-exon-scaffold_327-1575043694:401096..401280TCONS_00059417-exon-scaffold_327-1575043694:401096..401280Clytia hemisphaericaexon
TCONS_00059417-exon-scaffold_327-1491911889:401684..402692TCONS_00059417-exon-scaffold_327-1491911889:401684..402692Clytia hemisphaericaexon
TCONS_00059417-exon-scaffold_327-1510915933:401684..402692TCONS_00059417-exon-scaffold_327-1510915933:401684..402692Clytia hemisphaericaexon
TCONS_00059417-exon-scaffold_327-1575043694:401684..402692TCONS_00059417-exon-scaffold_327-1575043694:401684..402692Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_327supercontigscaffold_327:396859..402692 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
29.1509 27.5078 49.6961 51.9767 65.1177 53.372 59.2767 64.7373 63.7908 52.3197 38.1904 40.1623 32.9621 32.9743 28.9753 28.0691 41.9484 38.5743 25.8194 34.0531 52.2091 48.7075 42.1754 46.2201 45.7159 42.2586 37.3393 30.2889 37.0982 38.935
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR027799Rtf2_RING-finger
Blast
BLAST of TCONS_00059417 vs. Swiss-Prot (Human)
Match: RTF2 (Protein RTF2 homolog OS=Homo sapiens GN=RTFDC1 PE=1 SV=3)

HSP 1 Score: 217.238 bits (552), Expect = 2.513e-65
Identity = 134/307 (43.65%), Postives = 196/307 (63.84%), Query Frame = 3
Query:  177 MGCDGGTIPKRHELVKTAKRPEQKDKDMDRKAKWSTCTISQQPLSSPVVACELGKLYSKESIIEFLLDRS----ICETANHIRNLKDVKTLKLTPNAGFDS-KASGTANEYYDTQSARFVCPVVGIEMNGKYKFYTLWSCGCVLSERAFKEVESETCHNCGEKFDKDDVIVLNAEGEDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGVHEFAVPQKLSNAKTDDKQRPAKKPKLSSEVTDTKSKINGSGXXXXXXXXXXXXXXXXXXXXXQSKVYKNLFTS-SEKKNGKDNQAHWVTYNPY 1079
            MGCDGGTIPKRHELVK  K+ E+ DKD +  A+W+ CT+SQ+ L  P+VACELG+LY+K+++IEFLLD+S    + + A+HI+++K+V  LKL+ N  ++  K +   +++ D Q ARF+CPVVG+EMNG+++F  L  CGCV SERA KE+++E CH CG  F +DDVI+LN   ED++ ++T M+ERR + K  KK KK K+ E     +   E   P K+   K ++    +++ K +     T    + SG    A K     +K    D ++S+ YK+LFT+ S  K  K+  AHWVT+  Y
Sbjct:    1 MGCDGGTIPKRHELVKGPKKVEKVDKDAELVAQWNYCTLSQEILRRPIVACELGRLYNKDAVIEFLLDKSAEKALGKAASHIKSIKNVTELKLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLRCCGCVFSERALKEIKAEVCHTCGAAFQEDDVIMLNGTKEDVDVLKTRMEERRLRAKLEKKTKKPKAAESVSKPDVSEEAPGPSKVKTGKPEEASLDSREKKTNLAPKSTAMNESSSG---KAGKPPCGATKRSIADSEESEAYKSLFTTHSSAKRSKEESAHWVTHTSY 304          
The following BLAST results are available for this feature:
BLAST of TCONS_00059417 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RTF22.513e-6543.65Protein RTF2 homolog OS=Homo sapiens GN=RTFDC1 PE=... [more]
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