XLOC_037403 (gene) - C. hemisphaerica

Overview
NameXLOC_037403
Unique NameXLOC_037403
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_327:396859..402692+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_037403 ID=XLOC_037403|Name=XLOC_037403|organism=Clytia hemisphaerica|type=gene|length=5834bp|location=Sequence derived from alignment at scaffold_327:396859..402692+ (Clytia hemisphaerica)
TAAAATTTAGCGATTCTTATCCACACACACACAGTCTTTCTTCATTCGTG GTGAAAttcttattctttttaattgaattttttatttctattttatagAT TGTGTTTCAATTTTACCTTTCTGTGGTGTTCTATgctaacattttttttt gacattgttCAAGTTTTCAAATAATTATGGGTTGTGATGGAGGAACAATC CCAAAAAGACATGAACTCGTCAAAACGGCAAAGCGACCTGAACAGAAGGA TAAAGACATGGATAGAAAAGCAAAATGGTCTACTTGTACAATCAGCCAAC AACCATTATCAAGTCCTGTTGTTGCTTGCGAACTAGGGAAGCTTTACAGG TATATTTTGTAAATGTGTTGGTACACctcatcggaaattccacaaaaaca agGCCGTTTGTAAAAAATTGTTCGGTTCCCGTCACCCGACCAACCGTGAT TTCTACTGAAAAATTAGAGTCGGAGAGTCAGAAACAATTTTTCCTGACAG CTGAAACTCCACCATCACCCTCCATGTTTTCTTTTCTGAGAGAAAGAGCT AGAGCAAACGCTAATCTAACCTCCAAGCAGGTCTTGAATGCGGAATCTCA TCCCACGCATGCGCTCTAATAAAAGGGATGGAACCGCAGGATTATATGCC TTAGCAATGATGATCGGTTATGAGACGCTAATCTCAGCCAAAAAAACAAT TCGAAACCCGTTAATTCCGTTTTCATCCCGATTttcatgttcaatttttc attgcgGACCATAtaagcatcaaaacaaaccagcgGAGCTTTTGTGAAGT GAAAAAGAGGCTTAGGGCGATCGAACGTCCGTTTACCGCccttttctaag gaaaatttcCTCCTCTCGGACTGTTTCgttcaaacagaaaatatttttct accgaccgaccgaccgacctaCTTTTTTATGGTTGggatgacgggaacca aggGATTTTTTACGAACAGCCCAATCACGCTAAAATGGATCTGTTGAAAT TGGGAGGCAGCCCTGTGAATCCAGGTCGGCATTCCGCAATGCCGACCTGA AAGCCGACGTAACTTGAGCTGAAGTCAGCTTTTATTTGCAGACGTAATTT ACACTCTAAGTCGGCGTGccgacaaaagaaatgttttgggttGGCAAAGC CGacataaagaggaaaaatattatttgttaggttaatctaattgtgttat catttgataacacatgataatcgagcctcattccattctctttataaaac ataaaaCTTAATAACACAATTATAGAGCAGCTGAATTTGTTAGTTCGTTA ATTTTCTTCCTATTTTGTCTTTGACGACCTAAACAAGCTTCTTAGGacgg ctttgccgacctaaaatgacTTTGCCGACCTACGGCCGGTTTTGGTCGGC ACTTGAGTGCCGAtatgattttgtctgaattcacagggctggggaggtaa acataaatggtAGCGCGAGTAGCGCTAAAAGTTCCTGCGTAAAACAAGAT AATTCATTTGCTTATATCTGGCTTGTTTAcagtgagtggtcctaaatccc acagccctgcctaaatccaacCTCCCAAATAAccgctatgaaaaaaattc tatgtttacaaagattccctctccaagttgaacaaaaaactatattgcaa gaaatctcgaaacaaaacatctaacaagacgactaaaatttcaagatgtc aattaatgtgataagAAAAGTGTTAGTTGTAATAATAATTACCTCTATAA TTCTGAATCtgtgctcgtgtttaaaacgttaacaattttgtaattagaaa ttatgtttttgtataaaaagcagttaatgttttggttcaattggttcagt gtaaattcaaatctctcagtttagttgacactttggtatcttcatcgCAT CACagtgaaaggtttgtttttattttagtttgtatctttgaaagacccca tcggatttaggcagggctgtcggatttaggaccactcacagtataccgtg agattgggtaacttgcatcagtggaggctaacatgcatatccctcaaatg aaagacctggctggtcattaaaatacaaatttaaaacaaaacaaaaatgg tagagtagagctgcgagcggagctgtgtaattgtattttaatgaccagcc aggttattcatttgagggctatgcatgttagcctccactgatgcaagtta cccaatctcacggtatgttcctaaaaatacactgaatttgaaaaaaacga acaaaacaaagctttcaagatgctagcagaagcttaaaaaagagaaaaac aacaacttcggtggttcttcagttgatttggaggctcttttggcatcaat attttgggtgttttttaaggctttttgcctgaaaactgCAATATCGcgct ttgtttacctcccaaaaattgtttttttctcaacCCCCTTATTTAGGAGA GACAAGAGCGACTCACTTTCTGTTAGACCCGCGTTTTGACCGCGCTTAAA CGCGTTTCTTAAATATGGCCCGATctatattattacttttcacgaaATTC TCATGATGTAGATAGGCCTTTAGACTGATAGACCCTAACCATCCTAGGTC CACCAAACATAAGCAGAACTCAACCTAATTTTGCTAGAAGGGAGAAAGTT CAAAACTTGCACAAAATGATGGGAAGGCCAAAGATTaacaaacaaagaaa gaaaagtctcctagttaagagaaagaaatctcctacttaagagaccttct cttaaatagagtatATCTCTTATTTAGGGTATAATCCTCTACTGGCAGGG AGggtttttaaacaatttttttaactgCTCTaaaccagacggtactaatc aaaCGTTTGATAGTGATTGAAGTAACCAATAATGGAGAGGTGCaataatg ataaataataaTCAGTCTGTCGCAAAAAGGTTTCATATTAAAAAAACTTA GTATCCCtatacaaaagttgtcttttttatTTCCCAAACATTTCGTTTTA CAATGTGATTACTCTTGCggtcagtcgggttcaacatatATACACGTGTG ACTAGTCAAGTGACTGAAGTGGTTACTAAAACAACACAGGGACAAGTGTC TAAGCAACACAGATTATTTTTAAAGTAAACCAGCCGTATTAATTGTATAa agatccagactccacctcaattcgcaagttcctagcaaaataagagccca ataagagacactctgataaaactccaaaagagacagggttgtaagcttta accctattagccccaggggtgGGTAGAATCTagcacgctggagttctttt gtgtatatctcgaaaaaaaaattttaaacgacttgaaactttctgactct TTACAAAATTTTACTAAGAGTACTTGTACAAATCTTTAGGGTCATATAGG Tcctccagatcaggttttatgactttattgtgaaacatgacataaaaccc aacTAAAATCgctgaaaactcaaaattttaaagtgctgataacttctgaa ctatattcaatcattttcaaattttgacacgtgataggcattgacaatat aaatttgaaaaataaaaaaaaaattaaaaattatgacatcatcattttat gacgtcatcaatttttaaaaattttactcatcttcagcataaattttaag aaaaaatcttcattgaaAATGCAAAACCGACAATTATATTGAATTATCTT TCAGAATCTCTAAACAGaatttaaatatctttattggttcaactgtaata gacatttttgtaaaccatatatttgggcttgtttccgacaggtggaaatt ttggaatgacgtcattggtttttgaatgacgtcatcaattttttttcttt ctggaattttgtgtcatgatggagaacatctgtaccaaatttcatggcca tagcagCTCTCCCAGATCAAAAATAATTGAGGATGGTactggtagattct acccccctggggatacaataATCTAAAAAGCTTGGGGTTAATAGGATTAA AAggacattaaaaaagaaaattgaatggTGGAAAAGCTATTTTTTATCTC TACTCTAAATTAATCTTGGTGAGAATGTCAATAGTTACACACGTGTATAG AGTCTGTAGCATTTTGTGGAAATACAAATCTAGTTTTCAATATCAGTGAA AAAGGTCCTGTATTTCTTTTGCCATTGTAGttataatgaaaaatttatgt atcatgaaaatttgaaagcttATTTAATACTTTACAGCAAAGAATCCAtt atagaatttcttttggatcGATCAATATGTGAAACAGCAAACCACATCAG GAATTTGAAAGATGTCAAAACACTCAAACTTACTCCAAACGCTGGTTTTG ATTCAAAAGCATCCGGAACAGCAAATGAATATTATGATACACAAAGTGCA CGCTTTGTTTGCCCGGTTGTAGGTTAGAACTTTAATTCTGTTAAATCTTT ACGAAGTTTCTATTTATAAGATGAATTTTCAGACAAAAGCTTTTTTTGCG TTGTTTTAGGAAATAAAAAATCCACTGCTAAAAAATTAGCtggctttttt ttcaaatagcaAATTTCTGAAAGGCTGAAAGAGCAACAATAGGTTAATTT AATTCATCTTTAAAGATGAGAATGGATCAGATTTTTATTCCATCAAGTca gatttgttttttttgataTTCTGACACAAAAATGTTTCTGTAAAATTTCC TTACTAATACGTAATAGTAGCACTCATTGGAAGATCTAGCCTAGTAGTTT TCAAAGAACAAGCACAGTTATTACAATGTAGCTATACTGATTAATAACAA TAGCCAGCTATTCTTTTCATTACAGGCATTGAAATGAATGGAAAGTACAA GTTTTACACATTGTGGAGCTGTGGCTGTGTTCTTTCTGAAAGAGCATTCA AGGAGGTAGAATCTGAAACTTGCCATAACTGCGgagaaaaatttgataaa gatgATGTCATTGTTTTGAATGCAGAGGgtgaagatttggaaaaaatgga aacAAATATGAAGGAGAGAcgagagaaaatgaaaaaggcaaaaaagctaa agaaagaaaagagtAAAGAGAAAAGGAAAGCAGAAAATGGTGTACATGAG TTTGCTGTCCCACAGAAGCTGAGTAATGCTAAAACTGATGATAAACAACG TCCTGCCAAAAAGCCTAAATTATCATCTGAAGTTACTGATACAAAATCTA AAATCAATGGTAGCGGCAAAGATGTTCCAGCCAAAAAGGCTAAAAGTTCC AAATCCAAGGAAGATAAAGTTGATATCAAGCAATCGAAAGTTTACAAGAA CTTATTCACCTCTAGTGAAAAGAAGAATGGTAAAGATAATCAGGCCCATT GGGTTACATACAATCCCTATCATTTGTAAATATTCATTTAATGTACATGA TGTGTATACAGCTTTACACATTGActattttttattgctttgaAGTTTTA AAGTTTATTCGATTGATTAATACGAACTTTTAAAAGATGGAGTTCTCCAA AGCTAATGTCTCATCTGCCATGATCTCACAAagagaatatttttttcctt taaagtggtgatttttattttaatagtatttaacttaaccctattcatac taggcttttaggggcggttcagaactaggggggggcttttcctgtaccac cccttaacttttgatctagtgggtctttttggatgaaatttggcacaaaa gatccttgtgacgtaaggtaacttttggcaaaaaaactttttgatgacgt cactcatcatgcccaaagtgagcaaaaaccgaaaatttcctttgttctta taaatagctattgtattctaacaaaggctttaga
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00059417TCONS_00059417Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00059417-proteinTCONS_00059417-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_327supercontigscaffold_327:396859..402692 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
RTFDC1protein RTF2 homolog isoform a Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
29.15 27.51 49.7 51.98 65.12 53.37 59.28 64.74 63.79 52.32 38.19 40.16 32.96 32.97 28.98 28.07 41.95 38.57 25.82 34.05 52.21 48.71 42.18 46.22 45.72 42.26 37.34 30.29 37.1 38.94