TCONS_00059417-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00059417-protein
Unique Name	TCONS_00059417-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	303

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00059417-protein ID=TCONS_00059417-protein|Name=TCONS_00059417-protein|organism=Clytia hemisphaerica|type=polypeptide|length=303bp
MGCDGGTIPKRHELVKTAKRPEQKDKDMDRKAKWSTCTISQQPLSSPVVA
CELGKLYSKESIIEFLLDRSICETANHIRNLKDVKTLKLTPNAGFDSKAS
GTANEYYDTQSARFVCPVVGIEMNGKYKFYTLWSCGCVLSERAFKEVESE
TCHNCGEKFDKDDVIVLNAEGEDLEKMETNMKERREKMKKAKKLKKEKSK
EKRKAENGVHEFAVPQKLSNAKTDDKQRPAKKPKLSSEVTDTKSKINGSG
KDVPAKKAKSSKSKEDKVDIKQSKVYKNLFTSSEKKNGKDNQAHWVTYNP
YHL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_037403	XLOC_037403	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00059417	TCONS_00059417	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR027799	Rtf2_RING-finger

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 167..208
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 182..303
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 14..208 e-value: 1.0E-4 score: 21.5
IPR027799	Replication termination factor 2, RING-finger	PFAM	PF04641	Rtf2	coord: 1..286 e-value: 3.9E-82 score: 275.4

Blast

[Close]

BLAST of TCONS_00059417-protein vs. Swiss-Prot (Human)
Match: RTF2 (Protein RTF2 homolog OS=Homo sapiens GN=RTFDC1 PE=1 SV=3)

HSP 1 Score: 246.128 bits (627), Expect = 1.621e-80
Identity = 135/307 (43.97%), Postives = 196/307 (63.84%), Query Frame = 0

Query:    1 MGCDGGTIPKRHELVKTAKRPEQKDKDMDRKAKWSTCTISQQPLSSPVVACELGKLYSKESIIEFLLDRS----ICETANHIRNLKDVKTLKLTPNAGFDSKASGT-ANEYYDTQSARFVCPVVGIEMNGKYKFYTLWSCGCVLSERAFKEVESETCHNCGEKFDKDDVIVLNAEGEDLEKMETNMKERREKMKKAKKLKKEKSKEKRKAENGVHEFAVPQKLSNAKTDDKQRPAKKPKLSSEVTDTKSKINGSGKDVPAKKAKSSKSKEDKVDIKQSKVYKNLFTS-SEKKNGKDNQAHWVTYNPY 301
            MGCDGGTIPKRHELVK  K+ E+ DKD +  A+W+ CT+SQ+ L  P+VACELG+LY+K+++IEFLLD+S    + + A+HI+++K+V  LKL+ N  ++     T  +++ D Q ARF+CPVVG+EMNG+++F  L  CGCV SERA KE+++E CH CG  F +DDVI+LN   ED++ ++T M+ERR + K  KK KK K+ E     +   E   P K+   K ++    +++ K +     T    + SGK   A K     +K    D ++S+ YK+LFT+ S  K  K+  AHWVT+  Y
Sbjct:    1 MGCDGGTIPKRHELVKGPKKVEKVDKDAELVAQWNYCTLSQEILRRPIVACELGRLYNKDAVIEFLLDKSAEKALGKAASHIKSIKNVTELKLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLRCCGCVFSERALKEIKAEVCHTCGAAFQEDDVIMLNGTKEDVDVLKTRMEERRLRAKLEKKTKKPKAAESVSKPDVSEEAPGPSKVKTGKPEEASLDSREKKTNLAPKSTAMNESSSGK---AGKPPCGATKRSIADSEESEAYKSLFTTHSSAKRSKEESAHWVTHTSY 304

The following BLAST results are available for this feature:

BLAST of TCONS_00059417-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00059417-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RTF2	1.621e-80	43.97	Protein RTF2 homolog OS=Homo sapiens GN=RTFDC1 PE=...	[more]

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TCONS_00059417-protein (polypeptide) - C. hemisphaerica