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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059293 ID=TCONS_00059293|Name=TCONS_00059293|organism=Clytia hemisphaerica|type=transcript|length=1831bp TTCAACAATAACATCAAAGACCTTCTGGAGAGACATATTCCCACAGTCAA ACTTACCAAAGACCAGGTCAAATCTAAACTTAAACCATGGATCACTCCTG GAATTGTCAAGTCAATTTCCAAGAGAGATTTCTACCAACGAAAATACTTT AAGACTAAGAATGAGAACTACAAAATTTTATACAAACGCTATAGAAATTC TATAGTATCTCTGAGTAGAAGAAGCAAATTCATCTACTTTACTAACTATT TCAATAGACACTCAAAAAATATGAACAAAGTATGGTCCGGGGTTAGAGAC ATCATTTCATCAAGGACTGGGAAGTCCTCCTCTCCAATATCAATCTCAAT TGGAGACAAAGTATCATCCAAGCCTGCCGAAGTAGCTAATTCTTTTAATG ATTTCTTCACAACTATAGCTGACTCTATCAGAGACAAGATACAGCCAGCT AACCACCACTTCTCAAGCTTCATGAAAAACCCTAACCAAAACTCAatctt tttcacaccctcaacACCAGAAGAAATCAGTAAAATAATAAGCTCCTTCT CACCATCTAAATCATCAGGCCCTAACAGCATTCCTGTTAAGATACTCAAA CTTCTAAATCAAGACCTATCTACTCAAATCTCTTTTTTAATCAACAGGTC CTTTGAAACAGGAATATTCCCCTCCGCCCTTAAAATCTCCAAGGTTGTcc ctgttttcaaaaataagggTTCACCACTTGAAGTCTCTAACTACAGACCA ATATCTTTGCTGTCAAATATTGAAAAGATTTATGAGAAAGTTGCTTACTC CCGGGTAATAAACTTTCTCAATCGCTACAATCAAATATACTCTAaacaat ttggttttcgtaaAGCTCATTCAACCATTGACACCCTTATCAACATTACC GAGCGTATAAGGGAACGTCTTGATAAAAGGGAATTTGCCTGTGGTGTATT TGTTGACCTCCAGAAGGCCTTCGATACTGTTGACCACGAAATTCTTCTTT CCAAGCTCGACCATTATGGAATTCGTGGTACTGAGAATGCATGGTTCAAA TCTTATCTTTCTGATCGCTCCCAGTTTGTCTCTCTCTCTAACTCACAATC TAGATTGCTACCAATCAGACATGGGGTACCCCAAGGTTCAGTCCTTGGCC CTTTATTATTCTTAATTTACATCAACGACCTCCATTCATGCATTAGAACA TCTGAAACCTACCactttgctgatgatactcaCCTCTTAAACTTTGCTGA AACAGTCTGGTCCCTCTGTGGAAGGGTCAACGCAGACCTCAGAGTCCTTG TCAGCTGGCTCAAGGCTAATAAAATCTCTCTCAATGCAAGTAAAACCGAA TTTGTTATCTTTCACTCTCCATGGAAACGTCTTGATAGTATCCCTCGTCT CAAGCTAGCAGGTCAAATTCTGACTCCGAGCAAGTGGGTCAAATACCTTG GTGTTTACCTTGACGAACATCTGAACTGGAAACACCATGTCTCTACTGTC GCTACAAAACTTCGCAGAGCAAACGGAGCACTGTCTAAGATTCGACATTT TGTCCCTACAAAAACTCTCATCAATATCTATCATGGAGTATTCGCATCTC ATGTTAGATATGCTGCACAGATATGGGCTCTGTGTGACAATACAGCGACA CACAGAATCCAAGTTCTTCAAAATTCTGCAGTAGGAATTATGACTTTCAA CGGTCCTCGGGTTTCCGCTAATCCTCTATTAAACAATCTAGACCTACTCA ATGTTTTTGACCAAGTCAAAATCATGAACATTATCTATGTTTATAAATAC TTCAACGCTAGCCTCCCCATCGAGTCCCTCC Run BLAST on NCBI protein sequence of TCONS_00059293-protein >TCONS_00059293-protein ID=TCONS_00059293-protein|Name=TCONS_00059293-protein|organism=Clytia hemisphaerica|type=polypeptide|length=610bp
FNNNIKDLLERHIPTVKLTKDQVKSKLKPWITPGIVKSISKRDFYQRKYF KTKNENYKILYKRYRNSIVSLSRRSKFIYFTNYFNRHSKNMNKVWSGVRD IISSRTGKSSSPISISIGDKVSSKPAEVANSFNDFFTTIADSIRDKIQPA NHHFSSFMKNPNQNSIFFTPSTPEEISKIISSFSPSKSSGPNSIPVKILK LLNQDLSTQISFLINRSFETGIFPSALKISKVVPVFKNKGSPLEVSNYRP ISLLSNIEKIYEKVAYSRVINFLNRYNQIYSKQFGFRKAHSTIDTLINIT ERIRERLDKREFACGVFVDLQKAFDTVDHEILLSKLDHYGIRGTENAWFK SYLSDRSQFVSLSNSQSRLLPIRHGVPQGSVLGPLLFLIYINDLHSCIRT SETYHFADDTHLLNFAETVWSLCGRVNADLRVLVSWLKANKISLNASKTE FVIFHSPWKRLDSIPRLKLAGQILTPSKWVKYLGVYLDEHLNWKHHVSTV ATKLRRANGALSKIRHFVPTKTLINIYHGVFASHVRYAAQIWALCDNTAT HRIQVLQNSAVGIMTFNGPRVSANPLLNNLDLLNVFDQVKIMNIIYVYKY FNASLPIESL Run BLAST on NCBI transcript from alignment at scaffold_324:83434..85264 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059293 ID=TCONS_00059293|Name=TCONS_00059293|organism=Clytia hemisphaerica|type=transcript|length=1831bp|location=Sequence derived from alignment at scaffold_324:83434..85264 (Clytia hemisphaerica) GGAGGGACTCGATGGGGAGGCTAGCGTTGAAGTATTTATAAACATAGATA
ATGTTCATGATTTTGACTTGGTCAAAAACATTGAGTAGGTCTAGATTGTT
TAATAGAGGATTAGCGGAAACCCGAGGACCGTTGAAAGTCATAATTCCTA
CTGCAGAATTTTGAAGAACTTGGATTCTGTGTGTCGCTGTATTGTCACAC
AGAGCCCATATCTGTGCAGCATATCTAACATGAGATGCGAATACTCCATG
ATAGATATTGATGAGAGTTTTTGTAGGGACAAAATGTCGAATCTTAGACA
GTGCTCCGTTTGCTCTGCGAAGTTTTGTAGCGACAGTAGAGACATGGTGT
TTCCAGTTCAGATGTTCGTCAAGGTAAACACCAAGGTATTTGACCCACTT
GCTCGGAGTCAGAATTTGACCTGCTAGCTTGAGACGAGGGATACTATCAA
GACGTTTCCATGGAGAGTGAAAGATAACAAATTCGGTTTTACTTGCATTG
AGAGAGATTTTATTAGCCTTGAGCCAGCTGACAAGGACTCTGAGGTCTGC
GTTGACCCTTCCACAGAGGGACCAGACTGTTTCAGCAAAGTTTAAGAGGt
gagtatcatcagcaaagtGGTAGGTTTCAGATGTTCTAATGCATGAATGG
AGGTCGTTGATGTAAATTAAGAATAATAAAGGGCCAAGGACTGAACCTTG
GGGTACCCCATGTCTGATTGGTAGCAATCTAGATTGTGAGTTAGAGAGAG
AGACAAACTGGGAGCGATCAGAAAGATAAGATTTGAACCATGCATTCTCA
GTACCACGAATTCCATAATGGTCGAGCTTGGAAAGAAGAATTTCGTGGTC
AACAGTATCGAAGGCCTTCTGGAGGTCAACAAATACACCACAGGCAAATT
CCCTTTTATCAAGACGTTCCCTTATACGCTCGGTAATGTTGATAAGGGTG
TCAATGGTTGAATGAGCTttacgaaaaccaaattgttTAGAGTATATTTG
ATTGTAGCGATTGAGAAAGTTTATTACCCGGGAGTAAGCAACTTTCTCAT
AAATCTTTTCAATATTTGACAGCAAAGATATTGGTCTGTAGTTAGAGACT
TCAAGTGGTGAAcccttatttttgaaaacagggACAACCTTGGAGATTTT
AAGGGCGGAGGGGAATATTCCTGTTTCAAAGGACCTGTTGATTAAAAAAG
AGATTTGAGTAGATAGGTCTTGATTTAGAAGTTTGAGTATCTTAACAGGA
ATGCTGTTAGGGCCTGATGATTTAGATGGTGAGAAGGAGCTTATTATTTT
ACTGATTTCTTCTGGTgttgagggtgtgaaaaagatTGAGTTTTGGTTAG
GGTTTTTCATGAAGCTTGAGAAGTGGTGGTTAGCTGGCTGTATCTTGTCT
CTGATAGAGTCAGCTATAGTTGTGAAGAAATCATTAAAAGAATTAGCTAC
TTCGGCAGGCTTGGATGATACTTTGTCTCCAATTGAGATTGATATTGGAG
AGGAGGACTTCCCAGTCCTTGATGAAATGATGTCTCTAACCCCGGACCAT
ACTTTGTTCATATTTTTTGAGTGTCTATTGAAATAGTTAGTAAAGTAGAT
GAATTTGCTTCTTCTACTCAGAGATACTATAGAATTTCTATAGCGTTTGT
ATAAAATTTTGTAGTTCTCATTCTTAGTCTTAAAGTATTTTCGTTGGTAG
AAATCTCTCTTGGAAATTGACTTGACAATTCCAGGAGTGATCCATGGTTT
AAGTTTAGATTTGACCTGGTCTTTGGTAAGTTTGACTGTGGGAATATGTC
TCTCCAGAAGGTCTTTGATGTTATTGTTGAA Coding sequence (CDS) from alignment at scaffold_324:83434..85264 >TCONS_00059293 ID=TCONS_00059293|Name=TCONS_00059293|organism=Clytia hemisphaerica|type=CDS|length=1830bp|location=Sequence derived from alignment at scaffold_324:83434..85264 (Clytia hemisphaerica) GAGGGACTCGATGGGGAGGCTAGCGTTGAAGTATTTATAAACATAGATAA TGTTCATGATTTTGACTTGGTCAAAAACATTGAGTAGGTCTAGATTGTTT AATAGAGGATTAGCGGAAACCCGAGGACCGTTGAAAGTCATAATTCCTAC TGCAGAATTTTGAAGAACTTGGATTCTGTGTGTCGCTGTATTGTCACACA GAGCCCATATCTGTGCAGCATATCTAACATGAGATGCGAATACTCCATGA TAGATATTGATGAGAGTTTTTGTAGGGACAAAATGTCGAATCTTAGACAG TGCTCCGTTTGCTCTGCGAAGTTTTGTAGCGACAGTAGAGACATGGTGTT TCCAGTTCAGATGTTCGTCAAGGTAAACACCAAGGTATTTGACCCACTTG CTCGGAGTCAGAATTTGACCTGCTAGCTTGAGACGAGGGATACTATCAAG ACGTTTCCATGGAGAGTGAAAGATAACAAATTCGGTTTTACTTGCATTGA GAGAGATTTTATTAGCCTTGAGCCAGCTGACAAGGACTCTGAGGTCTGCG TTGACCCTTCCACAGAGGGACCAGACTGTTTCAGCAAAGTTTAAGAGGtg agtatcatcagcaaagtGGTAGGTTTCAGATGTTCTAATGCATGAATGGA GGTCGTTGATGTAAATTAAGAATAATAAAGGGCCAAGGACTGAACCTTGG GGTACCCCATGTCTGATTGGTAGCAATCTAGATTGTGAGTTAGAGAGAGA GACAAACTGGGAGCGATCAGAAAGATAAGATTTGAACCATGCATTCTCAG TACCACGAATTCCATAATGGTCGAGCTTGGAAAGAAGAATTTCGTGGTCA ACAGTATCGAAGGCCTTCTGGAGGTCAACAAATACACCACAGGCAAATTC CCTTTTATCAAGACGTTCCCTTATACGCTCGGTAATGTTGATAAGGGTGT CAATGGTTGAATGAGCTttacgaaaaccaaattgttTAGAGTATATTTGA TTGTAGCGATTGAGAAAGTTTATTACCCGGGAGTAAGCAACTTTCTCATA AATCTTTTCAATATTTGACAGCAAAGATATTGGTCTGTAGTTAGAGACTT CAAGTGGTGAAcccttatttttgaaaacagggACAACCTTGGAGATTTTA AGGGCGGAGGGGAATATTCCTGTTTCAAAGGACCTGTTGATTAAAAAAGA GATTTGAGTAGATAGGTCTTGATTTAGAAGTTTGAGTATCTTAACAGGAA TGCTGTTAGGGCCTGATGATTTAGATGGTGAGAAGGAGCTTATTATTTTA CTGATTTCTTCTGGTgttgagggtgtgaaaaagatTGAGTTTTGGTTAGG GTTTTTCATGAAGCTTGAGAAGTGGTGGTTAGCTGGCTGTATCTTGTCTC TGATAGAGTCAGCTATAGTTGTGAAGAAATCATTAAAAGAATTAGCTACT TCGGCAGGCTTGGATGATACTTTGTCTCCAATTGAGATTGATATTGGAGA GGAGGACTTCCCAGTCCTTGATGAAATGATGTCTCTAACCCCGGACCATA CTTTGTTCATATTTTTTGAGTGTCTATTGAAATAGTTAGTAAAGTAGATG AATTTGCTTCTTCTACTCAGAGATACTATAGAATTTCTATAGCGTTTGTA TAAAATTTTGTAGTTCTCATTCTTAGTCTTAAAGTATTTTCGTTGGTAGA AATCTCTCTTGGAAATTGACTTGACAATTCCAGGAGTGATCCATGGTTTA AGTTTAGATTTGACCTGGTCTTTGGTAAGTTTGACTGTGGGAATATGTCT CTCCAGAAGGTCTTTGATGTTATTGTTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00059293-exon-scaffold_324-1491911889:83434..85264 | TCONS_00059293-exon-scaffold_324-1491911889:83434..85264 | Clytia hemisphaerica | exon |
TCONS_00059293-exon-scaffold_324-1510915933:83434..85264 | TCONS_00059293-exon-scaffold_324-1510915933:83434..85264 | Clytia hemisphaerica | exon |
TCONS_00059293-exon-scaffold_324-1575043694:83434..85264 | TCONS_00059293-exon-scaffold_324-1575043694:83434..85264 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_324 | supercontig | scaffold_324:83434..85264 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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