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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059293 ID=TCONS_00059293|Name=TCONS_00059293|organism=Clytia hemisphaerica|type=transcript|length=1831bp
TTCAACAATAACATCAAAGACCTTCTGGAGAGACATATTCCCACAGTCAA
ACTTACCAAAGACCAGGTCAAATCTAAACTTAAACCATGGATCACTCCTG
GAATTGTCAAGTCAATTTCCAAGAGAGATTTCTACCAACGAAAATACTTT
AAGACTAAGAATGAGAACTACAAAATTTTATACAAACGCTATAGAAATTC
TATAGTATCTCTGAGTAGAAGAAGCAAATTCATCTACTTTACTAACTATT
TCAATAGACACTCAAAAAATATGAACAAAGTATGGTCCGGGGTTAGAGAC
ATCATTTCATCAAGGACTGGGAAGTCCTCCTCTCCAATATCAATCTCAAT
TGGAGACAAAGTATCATCCAAGCCTGCCGAAGTAGCTAATTCTTTTAATG
ATTTCTTCACAACTATAGCTGACTCTATCAGAGACAAGATACAGCCAGCT
AACCACCACTTCTCAAGCTTCATGAAAAACCCTAACCAAAACTCAatctt
tttcacaccctcaacACCAGAAGAAATCAGTAAAATAATAAGCTCCTTCT
CACCATCTAAATCATCAGGCCCTAACAGCATTCCTGTTAAGATACTCAAA
CTTCTAAATCAAGACCTATCTACTCAAATCTCTTTTTTAATCAACAGGTC
CTTTGAAACAGGAATATTCCCCTCCGCCCTTAAAATCTCCAAGGTTGTcc
ctgttttcaaaaataagggTTCACCACTTGAAGTCTCTAACTACAGACCA
ATATCTTTGCTGTCAAATATTGAAAAGATTTATGAGAAAGTTGCTTACTC
CCGGGTAATAAACTTTCTCAATCGCTACAATCAAATATACTCTAaacaat
ttggttttcgtaaAGCTCATTCAACCATTGACACCCTTATCAACATTACC
GAGCGTATAAGGGAACGTCTTGATAAAAGGGAATTTGCCTGTGGTGTATT
TGTTGACCTCCAGAAGGCCTTCGATACTGTTGACCACGAAATTCTTCTTT
CCAAGCTCGACCATTATGGAATTCGTGGTACTGAGAATGCATGGTTCAAA
TCTTATCTTTCTGATCGCTCCCAGTTTGTCTCTCTCTCTAACTCACAATC
TAGATTGCTACCAATCAGACATGGGGTACCCCAAGGTTCAGTCCTTGGCC
CTTTATTATTCTTAATTTACATCAACGACCTCCATTCATGCATTAGAACA
TCTGAAACCTACCactttgctgatgatactcaCCTCTTAAACTTTGCTGA
AACAGTCTGGTCCCTCTGTGGAAGGGTCAACGCAGACCTCAGAGTCCTTG
TCAGCTGGCTCAAGGCTAATAAAATCTCTCTCAATGCAAGTAAAACCGAA
TTTGTTATCTTTCACTCTCCATGGAAACGTCTTGATAGTATCCCTCGTCT
CAAGCTAGCAGGTCAAATTCTGACTCCGAGCAAGTGGGTCAAATACCTTG
GTGTTTACCTTGACGAACATCTGAACTGGAAACACCATGTCTCTACTGTC
GCTACAAAACTTCGCAGAGCAAACGGAGCACTGTCTAAGATTCGACATTT
TGTCCCTACAAAAACTCTCATCAATATCTATCATGGAGTATTCGCATCTC
ATGTTAGATATGCTGCACAGATATGGGCTCTGTGTGACAATACAGCGACA
CACAGAATCCAAGTTCTTCAAAATTCTGCAGTAGGAATTATGACTTTCAA
CGGTCCTCGGGTTTCCGCTAATCCTCTATTAAACAATCTAGACCTACTCA
ATGTTTTTGACCAAGTCAAAATCATGAACATTATCTATGTTTATAAATAC
TTCAACGCTAGCCTCCCCATCGAGTCCCTCC Run BLAST on NCBI protein sequence of TCONS_00059293-protein >TCONS_00059293-protein ID=TCONS_00059293-protein|Name=TCONS_00059293-protein|organism=Clytia hemisphaerica|type=polypeptide|length=610bp
FNNNIKDLLERHIPTVKLTKDQVKSKLKPWITPGIVKSISKRDFYQRKYF
KTKNENYKILYKRYRNSIVSLSRRSKFIYFTNYFNRHSKNMNKVWSGVRD
IISSRTGKSSSPISISIGDKVSSKPAEVANSFNDFFTTIADSIRDKIQPA
NHHFSSFMKNPNQNSIFFTPSTPEEISKIISSFSPSKSSGPNSIPVKILK
LLNQDLSTQISFLINRSFETGIFPSALKISKVVPVFKNKGSPLEVSNYRP
ISLLSNIEKIYEKVAYSRVINFLNRYNQIYSKQFGFRKAHSTIDTLINIT
ERIRERLDKREFACGVFVDLQKAFDTVDHEILLSKLDHYGIRGTENAWFK
SYLSDRSQFVSLSNSQSRLLPIRHGVPQGSVLGPLLFLIYINDLHSCIRT
SETYHFADDTHLLNFAETVWSLCGRVNADLRVLVSWLKANKISLNASKTE
FVIFHSPWKRLDSIPRLKLAGQILTPSKWVKYLGVYLDEHLNWKHHVSTV
ATKLRRANGALSKIRHFVPTKTLINIYHGVFASHVRYAAQIWALCDNTAT
HRIQVLQNSAVGIMTFNGPRVSANPLLNNLDLLNVFDQVKIMNIIYVYKY
FNASLPIESL Run BLAST on NCBI transcript from alignment at scaffold_324:83434..85264 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059293 ID=TCONS_00059293|Name=TCONS_00059293|organism=Clytia hemisphaerica|type=transcript|length=1831bp|location=Sequence derived from alignment at scaffold_324:83434..85264 (Clytia hemisphaerica)
GGAGGGACTCGATGGGGAGGCTAGCGTTGAAGTATTTATAAACATAGATA
ATGTTCATGATTTTGACTTGGTCAAAAACATTGAGTAGGTCTAGATTGTT
TAATAGAGGATTAGCGGAAACCCGAGGACCGTTGAAAGTCATAATTCCTA
CTGCAGAATTTTGAAGAACTTGGATTCTGTGTGTCGCTGTATTGTCACAC
AGAGCCCATATCTGTGCAGCATATCTAACATGAGATGCGAATACTCCATG
ATAGATATTGATGAGAGTTTTTGTAGGGACAAAATGTCGAATCTTAGACA
GTGCTCCGTTTGCTCTGCGAAGTTTTGTAGCGACAGTAGAGACATGGTGT
TTCCAGTTCAGATGTTCGTCAAGGTAAACACCAAGGTATTTGACCCACTT
GCTCGGAGTCAGAATTTGACCTGCTAGCTTGAGACGAGGGATACTATCAA
GACGTTTCCATGGAGAGTGAAAGATAACAAATTCGGTTTTACTTGCATTG
AGAGAGATTTTATTAGCCTTGAGCCAGCTGACAAGGACTCTGAGGTCTGC
GTTGACCCTTCCACAGAGGGACCAGACTGTTTCAGCAAAGTTTAAGAGGt
gagtatcatcagcaaagtGGTAGGTTTCAGATGTTCTAATGCATGAATGG
AGGTCGTTGATGTAAATTAAGAATAATAAAGGGCCAAGGACTGAACCTTG
GGGTACCCCATGTCTGATTGGTAGCAATCTAGATTGTGAGTTAGAGAGAG
AGACAAACTGGGAGCGATCAGAAAGATAAGATTTGAACCATGCATTCTCA
GTACCACGAATTCCATAATGGTCGAGCTTGGAAAGAAGAATTTCGTGGTC
AACAGTATCGAAGGCCTTCTGGAGGTCAACAAATACACCACAGGCAAATT
CCCTTTTATCAAGACGTTCCCTTATACGCTCGGTAATGTTGATAAGGGTG
TCAATGGTTGAATGAGCTttacgaaaaccaaattgttTAGAGTATATTTG
ATTGTAGCGATTGAGAAAGTTTATTACCCGGGAGTAAGCAACTTTCTCAT
AAATCTTTTCAATATTTGACAGCAAAGATATTGGTCTGTAGTTAGAGACT
TCAAGTGGTGAAcccttatttttgaaaacagggACAACCTTGGAGATTTT
AAGGGCGGAGGGGAATATTCCTGTTTCAAAGGACCTGTTGATTAAAAAAG
AGATTTGAGTAGATAGGTCTTGATTTAGAAGTTTGAGTATCTTAACAGGA
ATGCTGTTAGGGCCTGATGATTTAGATGGTGAGAAGGAGCTTATTATTTT
ACTGATTTCTTCTGGTgttgagggtgtgaaaaagatTGAGTTTTGGTTAG
GGTTTTTCATGAAGCTTGAGAAGTGGTGGTTAGCTGGCTGTATCTTGTCT
CTGATAGAGTCAGCTATAGTTGTGAAGAAATCATTAAAAGAATTAGCTAC
TTCGGCAGGCTTGGATGATACTTTGTCTCCAATTGAGATTGATATTGGAG
AGGAGGACTTCCCAGTCCTTGATGAAATGATGTCTCTAACCCCGGACCAT
ACTTTGTTCATATTTTTTGAGTGTCTATTGAAATAGTTAGTAAAGTAGAT
GAATTTGCTTCTTCTACTCAGAGATACTATAGAATTTCTATAGCGTTTGT
ATAAAATTTTGTAGTTCTCATTCTTAGTCTTAAAGTATTTTCGTTGGTAG
AAATCTCTCTTGGAAATTGACTTGACAATTCCAGGAGTGATCCATGGTTT
AAGTTTAGATTTGACCTGGTCTTTGGTAAGTTTGACTGTGGGAATATGTC
TCTCCAGAAGGTCTTTGATGTTATTGTTGAA Coding sequence (CDS) from alignment at scaffold_324:83434..85264 >TCONS_00059293 ID=TCONS_00059293|Name=TCONS_00059293|organism=Clytia hemisphaerica|type=CDS|length=1830bp|location=Sequence derived from alignment at scaffold_324:83434..85264 (Clytia hemisphaerica)
GAGGGACTCGATGGGGAGGCTAGCGTTGAAGTATTTATAAACATAGATAA
TGTTCATGATTTTGACTTGGTCAAAAACATTGAGTAGGTCTAGATTGTTT
AATAGAGGATTAGCGGAAACCCGAGGACCGTTGAAAGTCATAATTCCTAC
TGCAGAATTTTGAAGAACTTGGATTCTGTGTGTCGCTGTATTGTCACACA
GAGCCCATATCTGTGCAGCATATCTAACATGAGATGCGAATACTCCATGA
TAGATATTGATGAGAGTTTTTGTAGGGACAAAATGTCGAATCTTAGACAG
TGCTCCGTTTGCTCTGCGAAGTTTTGTAGCGACAGTAGAGACATGGTGTT
TCCAGTTCAGATGTTCGTCAAGGTAAACACCAAGGTATTTGACCCACTTG
CTCGGAGTCAGAATTTGACCTGCTAGCTTGAGACGAGGGATACTATCAAG
ACGTTTCCATGGAGAGTGAAAGATAACAAATTCGGTTTTACTTGCATTGA
GAGAGATTTTATTAGCCTTGAGCCAGCTGACAAGGACTCTGAGGTCTGCG
TTGACCCTTCCACAGAGGGACCAGACTGTTTCAGCAAAGTTTAAGAGGtg
agtatcatcagcaaagtGGTAGGTTTCAGATGTTCTAATGCATGAATGGA
GGTCGTTGATGTAAATTAAGAATAATAAAGGGCCAAGGACTGAACCTTGG
GGTACCCCATGTCTGATTGGTAGCAATCTAGATTGTGAGTTAGAGAGAGA
GACAAACTGGGAGCGATCAGAAAGATAAGATTTGAACCATGCATTCTCAG
TACCACGAATTCCATAATGGTCGAGCTTGGAAAGAAGAATTTCGTGGTCA
ACAGTATCGAAGGCCTTCTGGAGGTCAACAAATACACCACAGGCAAATTC
CCTTTTATCAAGACGTTCCCTTATACGCTCGGTAATGTTGATAAGGGTGT
CAATGGTTGAATGAGCTttacgaaaaccaaattgttTAGAGTATATTTGA
TTGTAGCGATTGAGAAAGTTTATTACCCGGGAGTAAGCAACTTTCTCATA
AATCTTTTCAATATTTGACAGCAAAGATATTGGTCTGTAGTTAGAGACTT
CAAGTGGTGAAcccttatttttgaaaacagggACAACCTTGGAGATTTTA
AGGGCGGAGGGGAATATTCCTGTTTCAAAGGACCTGTTGATTAAAAAAGA
GATTTGAGTAGATAGGTCTTGATTTAGAAGTTTGAGTATCTTAACAGGAA
TGCTGTTAGGGCCTGATGATTTAGATGGTGAGAAGGAGCTTATTATTTTA
CTGATTTCTTCTGGTgttgagggtgtgaaaaagatTGAGTTTTGGTTAGG
GTTTTTCATGAAGCTTGAGAAGTGGTGGTTAGCTGGCTGTATCTTGTCTC
TGATAGAGTCAGCTATAGTTGTGAAGAAATCATTAAAAGAATTAGCTACT
TCGGCAGGCTTGGATGATACTTTGTCTCCAATTGAGATTGATATTGGAGA
GGAGGACTTCCCAGTCCTTGATGAAATGATGTCTCTAACCCCGGACCATA
CTTTGTTCATATTTTTTGAGTGTCTATTGAAATAGTTAGTAAAGTAGATG
AATTTGCTTCTTCTACTCAGAGATACTATAGAATTTCTATAGCGTTTGTA
TAAAATTTTGTAGTTCTCATTCTTAGTCTTAAAGTATTTTCGTTGGTAGA
AATCTCTCTTGGAAATTGACTTGACAATTCCAGGAGTGATCCATGGTTTA
AGTTTAGATTTGACCTGGTCTTTGGTAAGTTTGACTGTGGGAATATGTCT
CTCCAGAAGGTCTTTGATGTTATTGTTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059293-exon-scaffold_324-1491911889:83434..85264 | TCONS_00059293-exon-scaffold_324-1491911889:83434..85264 | Clytia hemisphaerica | exon |
| TCONS_00059293-exon-scaffold_324-1510915933:83434..85264 | TCONS_00059293-exon-scaffold_324-1510915933:83434..85264 | Clytia hemisphaerica | exon |
| TCONS_00059293-exon-scaffold_324-1575043694:83434..85264 | TCONS_00059293-exon-scaffold_324-1575043694:83434..85264 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_324 | supercontig | scaffold_324:83434..85264 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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