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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059167 ID=TCONS_00059167|Name=TCONS_00059167|organism=Clytia hemisphaerica|type=transcript|length=2024bpRun BLAST on NCBI protein sequence of TCONS_00059167-protein >TCONS_00059167-protein ID=TCONS_00059167-protein|Name=TCONS_00059167-protein|organism=Clytia hemisphaerica|type=polypeptide|length=457bp MDILEFINALKQKTGDDYFMHLEKLKSSPELIQETIDVLELKSDSDLANARun BLAST on NCBI transcript from alignment at scaffold_319:188810..195333+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059167 ID=TCONS_00059167|Name=TCONS_00059167|organism=Clytia hemisphaerica|type=transcript|length=6524bp|location=Sequence derived from alignment at scaffold_319:188810..195333+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_319:188810..195333+ >TCONS_00059167 ID=TCONS_00059167|Name=TCONS_00059167|organism=Clytia hemisphaerica|type=CDS|length=15114bp|location=Sequence derived from alignment at scaffold_319:188810..195333+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00059167 vs. Swiss-Prot (Human)
Match: HYCCI (Hyccin OS=Homo sapiens GN=FAM126A PE=1 SV=2) HSP 1 Score: 107.071 bits (266), Expect = 3.132e-24 Identity = 74/245 (30.20%), Postives = 124/245 (50.61%), Query Frame = 1
Query: 184 LKSSPELIQETIDVLELKSDSDLANAICEALFVLYTDVGNESHKVCLQFIPAVIWAYYCQLSQK---ARGKPEALLLAFYNKCVTRNVETPFTNSFRIPKLSKPSVFHEPMQLAASATLTENALNQHDKSNKTIIFKGPTKRLDHIPSGMRNTVIATVLQEFNFSLSSYTKPTLLSLCHLVFRLSICGYKQPEV-SCPGISKENISSLFNKTKVRLSAKCVQELVTALQFTSYNGLYEESKIVLD 906
LK L+ V++ + S+L +C LF Y + + LQF+P +IW Y + + + G EALLL YN + SF IP LSKPSV+HEP + + A LTE+AL+QH S +++ GP + + + + R V+ +L +N +L+ +L SLC + R+ +CGY + V GIS +++ +S+ + +++T + F YNG ++ ++ LD
Sbjct: 31 LKDKSSLVSSLYKVIQ-EPQSELLEPVCHQLFEFYRSGEEQLLQFTLQFLPELIWCYLAVSASRNVHSSGCIEALLLGVYNLEIVDKQGHTKVLSFTIPSLSKPSVYHEPSSIGSMA-LTESALSQHGLSK--VVYSGPHPQREMLTAQNRFEVLTFLLLCYNAALTYMPSVSLQSLCQICSRICVCGYPRQHVRKYKGIS----------SRIPVSSGFMVQMLTGIYFAFYNGEWDLAQKALD 261 The following BLAST results are available for this feature:
BLAST of TCONS_00059167 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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