|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058785 ID=TCONS_00058785|Name=TCONS_00058785|organism=Clytia hemisphaerica|type=transcript|length=1701bp
tggaaaataaatttttaaaatattttactaaTTTTACATGCAATATTAGG
AGCTTGAAATTTACCACGTGAAACAAAATGACCAATAAAAATGTCTATGG
TAAATGATTTTTACGAATATTAATGCTAGCAACGTCGTAAAAAATAGCGA
TGACCTAACGACGAGTGTTTTCCGTGAGCTTTTAATCTGTATTTTCTAAT
CCGTTGATCTGCTCAATTTTAACATGAGAATATGTGCTCTCCATATTCAA
TTCTTTGGATAGTAATTATAAGTTTACTTATTTTGGTGACGCTGATTGTC
Gtcttcagtcagtcaggatgtagaaaaattgaaagctaaccgtctccgtc
gcagaaaaacacagataCATAAACTCATATGATTGAGACATGCGCGATGG
ACTTCTTGAAGTCCGTCGGCACAGACTTAATTTCAGAGAAATTATgtcta
acacccctgtctcacagcccggtAGATATGTTTTCCCATAATAGAATAAA
AGTTAATCCCAATCTTAATCCCAATGGGAataggaattctattgttccaa
ttCAATTGTCctcaaaaattgttttggagtgcaatttttccatTGCATTG
CAAATGGGAATAAAATCTAATTCAATTTGCCAGCAGGGGTGATattttag
ggtattttcccCACCGGGACAAAATGtaagccaaattttccagtggggct
tgggtcccagcgggtctgtgacagaGGGGGTATGTCTGAGCACCTCCTCT
GACGCAAATTAAATATTTACAattgttttaagaaaataaaactAAACCTA
ACGAAGTCTTGGTAATTTAGCAAAGATATCCATCAACttcagataaaaac
aaagtccTGAAAACAACAAATAATTGATATCATGTATCAGTAAATAAATT
GATCTTGATGCACACCAGGCTTGGAAATTACCACCAAAGATTTGAACAGT
TGAATAAAGTGTAAACGGAAAGGCCATGGTGTAATAACAGATAAACACCA
GTCTTGGAAtataaatatctttccaacggagATCTTTGAGTCCAGGAACC
GGTTTAATATCGTGCTGTCTAATACTTTCCAAGTAAAGTCTGTTATTTCG
GTATTTTTTGATGCAATTCATGtaataaaatgtcaaaatgaaaaaagaaa
tggTCACAAATAACACTGTAGTGATTGCAAACACTAAATCCACTTTTGCA
AATGCAAGGAATCCACCAAAAGCTGTTAAACCAAGAGCCCAAACAACCAT
CAGTAGACTTGTTGAATGTGATAAACCTTTTTTACCGGTCGTGCTACGAA
TGAGAAGCGATTCAGCGTAGGTGAAACAAAGTTGGTGTAATATGGTGAGT
AATGTTGAGGAGCCGAGAACGCACAACCGCAAGTAACCGGCTCCACCATA
ACCATTATGGAAATCAGGAATGACGTCATCGCATAAATTTAATATAGTGA
TGCATAAATTAAAAGCAGCGTAACTGATGAATATGGGGcggaatattttt
gataaattgtgAGTTGTGATTGAGATGAAAAGACTTGAGATTGATGCAAA
TATTCCAAGACAATCCACAAAAATGTATAATCCTTCCATCGCTGTTATCT
CATCCATTTTCTGGAAGTTTACAATTTCGACCTCTGTTTATGACTTTGAT
TTCTTTCTACCTAGCAACTTCCAATTTCATCTGCGgcttattatattttt
c Run BLAST on NCBI protein sequence of TCONS_00058785-protein >TCONS_00058785-protein ID=TCONS_00058785-protein|Name=TCONS_00058785-protein|organism=Clytia hemisphaerica|type=polypeptide|length=269bp
MDEITAMEGLYIFVDCLGIFASISSLFISITTHNLSKIFRPIFISYAAFN
LCITILNLCDDVIPDFHNGYGGAGYLRLCVLGSSTLLTILHQLCFTYAES
LLIRSTTGKKGLSHSTSLLMVVWALGLTAFGGFLAFAKVDLVFAITTVLF
VTISFFILTFYYMNCIKKYRNNRLYLESIRQHDIKPVPGLKDLRWKDIYI
PRLVFICYYTMAFPFTLYSTVQIFGGNFQAWCASRSIYLLIHDINYLLFS
GLCFYLKLMDIFAKLPRLR Run BLAST on NCBI transcript from alignment at scaffold_313:119591..121291 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058785 ID=TCONS_00058785|Name=TCONS_00058785|organism=Clytia hemisphaerica|type=transcript|length=1701bp|location=Sequence derived from alignment at scaffold_313:119591..121291 (Clytia hemisphaerica)
gaaaaatataataagcCGCAGATGAAATTGGAAGTTGCTAGGTAGAAAGA
AATCAAAGTCATAAACAGAGGTCGAAATTGTAAACTTCCAGAAAATGGAT
GAGATAACAGCGATGGAAGGATTATACATTTTTGTGGATTGTCTTGGAAT
ATTTGCATCAATCTCAAGTCTTTTCATCTCAATCACAACTcacaatttat
caaaaatattccgCCCCATATTCATCAGTTACGCTGCTTTTAATTTATGC
ATCACTATATTAAATTTATGCGATGACGTCATTCCTGATTTCCATAATGG
TTATGGTGGAGCCGGTTACTTGCGGTTGTGCGTTCTCGGCTCCTCAACAT
TACTCACCATATTACACCAACTTTGTTTCACCTACGCTGAATCGCTTCTC
ATTCGTAGCACGACCGGTAAAAAAGGTTTATCACATTCAACAAGTCTACT
GATGGTTGTTTGGGCTCTTGGTTTAACAGCTTTTGGTGGATTCCTTGCAT
TTGCAAAAGTGGATTTAGTGTTTGCAATCACTACAGTGTTATTTGTGAcc
atttcttttttcattttgacattttattaCATGAATTGCATCAAAAAATA
CCGAAATAACAGACTTTACTTGGAAAGTATTAGACAGCACGATATTAAAC
CGGTTCCTGGACTCAAAGATctccgttggaaagatatttataTTCCAAGA
CTGGTGTTTATCTGTTATTACACCATGGCCTTTCCGTTTACACTTTATTC
AACTGTTCAAATCTTTGGTGGTAATTTCCAAGCCTGGTGTGCATCAAGAT
CAATTTATTTACTGATACATGATATCAATTATTTGTTGTTTTCAggactt
tgtttttatctgaaGTTGATGGATATCTTTGCTAAATTACCAAGACTTCG
TTAGGTTTagttttattttcttaaaacaatTGTAAATATTTAATTTGCGT
CAGAGGAGGTGCTCAGACATACCCCCtctgtcacagacccgctgggaccc
aagccccactggaaaatttggcttaCATTTTGTCCCGGTGgggaaaatac
cctaaaatATCACCCCTGCTGGCAAATTGAATTAGATTTTATTCCCATTT
GCAATGCAatggaaaaattgcactccaaaacaatttttgagGACAATTGa
attggaacaatagaattcctatTCCCATTGGGATTAAGATTGGGATTAAC
TTTTATTCTATTATGGGAAAACATATCTaccgggctgtgagacaggggtg
ttagacATAATTTCTCTGAAATTAAGTCTGTGCCGACGGACTTCAAGAAG
TCCATCGCGCATGTCTCAATCATATGAGTTTATGtatctgtgtttttctg
cgacggagacggttagctttcaatttttctacatcctgactgactgaaga
CGACAATCAGCGTCACCAAAATAAGTAAACTTATAATTACTATCCAAAGA
ATTGAATATGGAGAGCACATATTCTCATGTTAAAATTGAGCAGATCAACG
GATTAGAAAATACAGATTAAAAGCTCACGGAAAACACTCGTCGTTAGGTC
ATCGCTATTTTTTACGACGTTGCTAGCATTAATATTCGTAAAAATCATTT
ACCATAGACATTTTTATTGGTCATTTTGTTTCACGTGGTAAATTTCAAGC
TCCTAATATTGCATGTAAAAttagtaaaatattttaaaaatttattttcc
a Coding sequence (CDS) from alignment at scaffold_313:119591..121291 >TCONS_00058785 ID=TCONS_00058785|Name=TCONS_00058785|organism=Clytia hemisphaerica|type=CDS|length=810bp|location=Sequence derived from alignment at scaffold_313:119591..121291 (Clytia hemisphaerica)
ATGGATGAGATAACAGCGATGGAAGGATTATACATTTTTGTGGATTGTCT
TGGAATATTTGCATCAATCTCAAGTCTTTTCATCTCAATCACAACTcaca
atttatcaaaaatattccgCCCCATATTCATCAGTTACGCTGCTTTTAAT
TTATGCATCACTATATTAAATTTATGCGATGACGTCATTCCTGATTTCCA
TAATGGTTATGGTGGAGCCGGTTACTTGCGGTTGTGCGTTCTCGGCTCCT
CAACATTACTCACCATATTACACCAACTTTGTTTCACCTACGCTGAATCG
CTTCTCATTCGTAGCACGACCGGTAAAAAAGGTTTATCACATTCAACAAG
TCTACTGATGGTTGTTTGGGCTCTTGGTTTAACAGCTTTTGGTGGATTCC
TTGCATTTGCAAAAGTGGATTTAGTGTTTGCAATCACTACAGTGTTATTT
GTGAccatttcttttttcattttgacattttattaCATGAATTGCATCAA
AAAATACCGAAATAACAGACTTTACTTGGAAAGTATTAGACAGCACGATA
TTAAACCGGTTCCTGGACTCAAAGATctccgttggaaagatatttataTT
CCAAGACTGGTGTTTATCTGTTATTACACCATGGCCTTTCCGTTTACACT
TTATTCAACTGTTCAAATCTTTGGTGGTAATTTCCAAGCCTGGTGTGCAT
CAAGATCAATTTATTTACTGATACATGATATCAATTATTTGTTGTTTTCA
ggactttgtttttatctgaaGTTGATGGATATCTTTGCTAAATTACCAAG
ACTTCGTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058785-exon-scaffold_313-1491911889:119591..121291 | TCONS_00058785-exon-scaffold_313-1491911889:119591..121291 | Clytia hemisphaerica | exon |
| TCONS_00058785-exon-scaffold_313-1510915933:119591..121291 | TCONS_00058785-exon-scaffold_313-1510915933:119591..121291 | Clytia hemisphaerica | exon |
| TCONS_00058785-exon-scaffold_313-1575043694:119591..121291 | TCONS_00058785-exon-scaffold_313-1575043694:119591..121291 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_313 | supercontig | scaffold_313:119591..121291 . |
Blast
The following BLAST results are available for this feature:
|
