TCONS_00058785 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058785
Unique NameTCONS_00058785
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1701

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058785 ID=TCONS_00058785|Name=TCONS_00058785|organism=Clytia hemisphaerica|type=transcript|length=1701bp
tggaaaataaatttttaaaatattttactaaTTTTACATGCAATATTAGG
AGCTTGAAATTTACCACGTGAAACAAAATGACCAATAAAAATGTCTATGG
TAAATGATTTTTACGAATATTAATGCTAGCAACGTCGTAAAAAATAGCGA
TGACCTAACGACGAGTGTTTTCCGTGAGCTTTTAATCTGTATTTTCTAAT
CCGTTGATCTGCTCAATTTTAACATGAGAATATGTGCTCTCCATATTCAA
TTCTTTGGATAGTAATTATAAGTTTACTTATTTTGGTGACGCTGATTGTC
Gtcttcagtcagtcaggatgtagaaaaattgaaagctaaccgtctccgtc
gcagaaaaacacagataCATAAACTCATATGATTGAGACATGCGCGATGG
ACTTCTTGAAGTCCGTCGGCACAGACTTAATTTCAGAGAAATTATgtcta
acacccctgtctcacagcccggtAGATATGTTTTCCCATAATAGAATAAA
AGTTAATCCCAATCTTAATCCCAATGGGAataggaattctattgttccaa
ttCAATTGTCctcaaaaattgttttggagtgcaatttttccatTGCATTG
CAAATGGGAATAAAATCTAATTCAATTTGCCAGCAGGGGTGATattttag
ggtattttcccCACCGGGACAAAATGtaagccaaattttccagtggggct
tgggtcccagcgggtctgtgacagaGGGGGTATGTCTGAGCACCTCCTCT
GACGCAAATTAAATATTTACAattgttttaagaaaataaaactAAACCTA
ACGAAGTCTTGGTAATTTAGCAAAGATATCCATCAACttcagataaaaac
aaagtccTGAAAACAACAAATAATTGATATCATGTATCAGTAAATAAATT
GATCTTGATGCACACCAGGCTTGGAAATTACCACCAAAGATTTGAACAGT
TGAATAAAGTGTAAACGGAAAGGCCATGGTGTAATAACAGATAAACACCA
GTCTTGGAAtataaatatctttccaacggagATCTTTGAGTCCAGGAACC
GGTTTAATATCGTGCTGTCTAATACTTTCCAAGTAAAGTCTGTTATTTCG
GTATTTTTTGATGCAATTCATGtaataaaatgtcaaaatgaaaaaagaaa
tggTCACAAATAACACTGTAGTGATTGCAAACACTAAATCCACTTTTGCA
AATGCAAGGAATCCACCAAAAGCTGTTAAACCAAGAGCCCAAACAACCAT
CAGTAGACTTGTTGAATGTGATAAACCTTTTTTACCGGTCGTGCTACGAA
TGAGAAGCGATTCAGCGTAGGTGAAACAAAGTTGGTGTAATATGGTGAGT
AATGTTGAGGAGCCGAGAACGCACAACCGCAAGTAACCGGCTCCACCATA
ACCATTATGGAAATCAGGAATGACGTCATCGCATAAATTTAATATAGTGA
TGCATAAATTAAAAGCAGCGTAACTGATGAATATGGGGcggaatattttt
gataaattgtgAGTTGTGATTGAGATGAAAAGACTTGAGATTGATGCAAA
TATTCCAAGACAATCCACAAAAATGTATAATCCTTCCATCGCTGTTATCT
CATCCATTTTCTGGAAGTTTACAATTTCGACCTCTGTTTATGACTTTGAT
TTCTTTCTACCTAGCAACTTCCAATTTCATCTGCGgcttattatattttt
c
Run BLAST on NCBI

protein sequence of TCONS_00058785-protein

>TCONS_00058785-protein ID=TCONS_00058785-protein|Name=TCONS_00058785-protein|organism=Clytia hemisphaerica|type=polypeptide|length=269bp
MDEITAMEGLYIFVDCLGIFASISSLFISITTHNLSKIFRPIFISYAAFN
LCITILNLCDDVIPDFHNGYGGAGYLRLCVLGSSTLLTILHQLCFTYAES
LLIRSTTGKKGLSHSTSLLMVVWALGLTAFGGFLAFAKVDLVFAITTVLF
VTISFFILTFYYMNCIKKYRNNRLYLESIRQHDIKPVPGLKDLRWKDIYI
PRLVFICYYTMAFPFTLYSTVQIFGGNFQAWCASRSIYLLIHDINYLLFS
GLCFYLKLMDIFAKLPRLR
Run BLAST on NCBI

transcript from alignment at scaffold_313:119591..121291

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058785 ID=TCONS_00058785|Name=TCONS_00058785|organism=Clytia hemisphaerica|type=transcript|length=1701bp|location=Sequence derived from alignment at scaffold_313:119591..121291 (Clytia hemisphaerica)
gaaaaatataataagcCGCAGATGAAATTGGAAGTTGCTAGGTAGAAAGA AATCAAAGTCATAAACAGAGGTCGAAATTGTAAACTTCCAGAAAATGGAT GAGATAACAGCGATGGAAGGATTATACATTTTTGTGGATTGTCTTGGAAT ATTTGCATCAATCTCAAGTCTTTTCATCTCAATCACAACTcacaatttat caaaaatattccgCCCCATATTCATCAGTTACGCTGCTTTTAATTTATGC ATCACTATATTAAATTTATGCGATGACGTCATTCCTGATTTCCATAATGG TTATGGTGGAGCCGGTTACTTGCGGTTGTGCGTTCTCGGCTCCTCAACAT TACTCACCATATTACACCAACTTTGTTTCACCTACGCTGAATCGCTTCTC ATTCGTAGCACGACCGGTAAAAAAGGTTTATCACATTCAACAAGTCTACT GATGGTTGTTTGGGCTCTTGGTTTAACAGCTTTTGGTGGATTCCTTGCAT TTGCAAAAGTGGATTTAGTGTTTGCAATCACTACAGTGTTATTTGTGAcc atttcttttttcattttgacattttattaCATGAATTGCATCAAAAAATA CCGAAATAACAGACTTTACTTGGAAAGTATTAGACAGCACGATATTAAAC CGGTTCCTGGACTCAAAGATctccgttggaaagatatttataTTCCAAGA CTGGTGTTTATCTGTTATTACACCATGGCCTTTCCGTTTACACTTTATTC AACTGTTCAAATCTTTGGTGGTAATTTCCAAGCCTGGTGTGCATCAAGAT CAATTTATTTACTGATACATGATATCAATTATTTGTTGTTTTCAggactt tgtttttatctgaaGTTGATGGATATCTTTGCTAAATTACCAAGACTTCG TTAGGTTTagttttattttcttaaaacaatTGTAAATATTTAATTTGCGT CAGAGGAGGTGCTCAGACATACCCCCtctgtcacagacccgctgggaccc aagccccactggaaaatttggcttaCATTTTGTCCCGGTGgggaaaatac cctaaaatATCACCCCTGCTGGCAAATTGAATTAGATTTTATTCCCATTT GCAATGCAatggaaaaattgcactccaaaacaatttttgagGACAATTGa attggaacaatagaattcctatTCCCATTGGGATTAAGATTGGGATTAAC TTTTATTCTATTATGGGAAAACATATCTaccgggctgtgagacaggggtg ttagacATAATTTCTCTGAAATTAAGTCTGTGCCGACGGACTTCAAGAAG TCCATCGCGCATGTCTCAATCATATGAGTTTATGtatctgtgtttttctg cgacggagacggttagctttcaatttttctacatcctgactgactgaaga CGACAATCAGCGTCACCAAAATAAGTAAACTTATAATTACTATCCAAAGA ATTGAATATGGAGAGCACATATTCTCATGTTAAAATTGAGCAGATCAACG GATTAGAAAATACAGATTAAAAGCTCACGGAAAACACTCGTCGTTAGGTC ATCGCTATTTTTTACGACGTTGCTAGCATTAATATTCGTAAAAATCATTT ACCATAGACATTTTTATTGGTCATTTTGTTTCACGTGGTAAATTTCAAGC TCCTAATATTGCATGTAAAAttagtaaaatattttaaaaatttattttcc a

Coding sequence (CDS) from alignment at scaffold_313:119591..121291

>TCONS_00058785 ID=TCONS_00058785|Name=TCONS_00058785|organism=Clytia hemisphaerica|type=CDS|length=810bp|location=Sequence derived from alignment at scaffold_313:119591..121291 (Clytia hemisphaerica)
ATGGATGAGATAACAGCGATGGAAGGATTATACATTTTTGTGGATTGTCT
TGGAATATTTGCATCAATCTCAAGTCTTTTCATCTCAATCACAACTcaca
atttatcaaaaatattccgCCCCATATTCATCAGTTACGCTGCTTTTAAT
TTATGCATCACTATATTAAATTTATGCGATGACGTCATTCCTGATTTCCA
TAATGGTTATGGTGGAGCCGGTTACTTGCGGTTGTGCGTTCTCGGCTCCT
CAACATTACTCACCATATTACACCAACTTTGTTTCACCTACGCTGAATCG
CTTCTCATTCGTAGCACGACCGGTAAAAAAGGTTTATCACATTCAACAAG
TCTACTGATGGTTGTTTGGGCTCTTGGTTTAACAGCTTTTGGTGGATTCC
TTGCATTTGCAAAAGTGGATTTAGTGTTTGCAATCACTACAGTGTTATTT
GTGAccatttcttttttcattttgacattttattaCATGAATTGCATCAA
AAAATACCGAAATAACAGACTTTACTTGGAAAGTATTAGACAGCACGATA
TTAAACCGGTTCCTGGACTCAAAGATctccgttggaaagatatttataTT
CCAAGACTGGTGTTTATCTGTTATTACACCATGGCCTTTCCGTTTACACT
TTATTCAACTGTTCAAATCTTTGGTGGTAATTTCCAAGCCTGGTGTGCAT
CAAGATCAATTTATTTACTGATACATGATATCAATTATTTGTTGTTTTCA
ggactttgtttttatctgaaGTTGATGGATATCTTTGCTAAATTACCAAG
ACTTCGTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037028XLOC_037028Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058785-proteinTCONS_00058785-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058785-exon-scaffold_313-1491911889:119591..121291TCONS_00058785-exon-scaffold_313-1491911889:119591..121291Clytia hemisphaericaexon
TCONS_00058785-exon-scaffold_313-1510915933:119591..121291TCONS_00058785-exon-scaffold_313-1510915933:119591..121291Clytia hemisphaericaexon
TCONS_00058785-exon-scaffold_313-1575043694:119591..121291TCONS_00058785-exon-scaffold_313-1575043694:119591..121291Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_313supercontigscaffold_313:119591..121291 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0951146 0 0.0538468 0.131702 0.192401 0.0253396 2.10941 2.46135 0.881664 0.868702 1.99955 0.807659 1.05957 1.62592 0.162028 0.318781 1.6244 1.62836 3.58937 2.98894 2.89681 2.59043 0.627075 1.3385 1.09779 1.43545 0.293447 0.0695944 0.0263924 0.107559
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058785 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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