TCONS_00058057 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058057
Unique NameTCONS_00058057
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1205

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058057 ID=TCONS_00058057|Name=TCONS_00058057|organism=Clytia hemisphaerica|type=transcript|length=1205bp
AATTTACGACAgagagaaggatattttttggtCTTACCTTCAATGAAATA
TCCATATTCAGAGAGCAAATTAAAACCCATACAAAAGGTCTTAGTCCCGA
CATCGCTCAACGGCAGCACGATGTCAAAGAAGATAAGCTTCAAAATCTCC
TTCAGGCTAAACACTTCGTTAAATTTGGGGCATCAGTTTATGTCAAAGAG
ATCGTGACAAAACTCAAAAGCAGGGAGGATTTTAAACAGTGCGATGCTTT
TGCAGCACGGAATATCCTCATGATATTCACTTGTTTTGTCAATGGGCTCA
GaaCTTCAAATTTAATGAACATGAGCATCCAGGATTTCGAAAAAGCCGAG
TTCGACAAAGAATTCCATGCATTTGTCTTGAATAATCGTTTATATAAAAC
AAGTCTTCTATACGGCGCAAAAATCATTGTGCTCTCTAAAATACTCCATC
GAATGTACAAAACTTATTTCAAGAATTGTCGCCCTTTATTGTCAAAAGAT
GAAGGTTTCAGTGATGCAAACAGGCCAATCTTTCCGTCGagcaaaagtgg
ggaggctttGAATCAAAATGGTATCTCAAAAGCATTTCAAACCACTTTTG
AAAGATCCAAGATTCTGGAAGGCACCTCTCGATGAACTTGAGTCCAACAC
GAATCCGAATCGCAATAGCCACCGAATTCGCTCATCACAAGGGTGAAGAT
TACAATCGCTTTGCGGAGGTGTTTTTAAAACACCGCCCATCAACTAGCAA
GAAATTCTATGTACAACGCTTCATGCACCGTGATGCCATCATGATGAGCA
TGAAGTGTTACGATGTCTTTGAGATTGATAAATCATTGCGTGATGCTGCC
ACTTCTTTTACGAAGAGTGTCTGCAGGATCAAACCAAAGTCAAAGAAATT
ATTTGAATGGTTGAAACAGAACAAAGCCATCATCAAAGAAGAGATAGGCG
AAACATTCACGGACGAAGAAAATGGATCAGGAGCTAGGAAAATTATTATC
ATCAACCAATGAAGACaaagaaacagaaaaatcagTGAACAAAATTCTGA
ATGAAGACATAGAACTTCCTTCTAAAAAGGCAAAAGTTGATGCTGCAACC
ACTAAAGATCGAAAAAGCGAAAGAGTGGcggaagaagatgaagaaagaGA
TAAAGTTCCTTTAAACAAAACCAAAGTTGatattattaaattattttata
aattt
Run BLAST on NCBI

transcript from alignment at scaffold_304:268713..272163-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058057 ID=TCONS_00058057|Name=TCONS_00058057|organism=Clytia hemisphaerica|type=transcript|length=3451bp|location=Sequence derived from alignment at scaffold_304:268713..272163- (Clytia hemisphaerica)
AATTTACGACAGAGAGAAGGATATTTTTTGGTCTTACCTTCAATGAAATA
TCCATATTCAGAGAGCAAATTAAAACCCATACAAAAGGTTTGTCTAATGG
GTGCTTTTATATTCATGTTTAAAGTGAAACAAAAACAGCAAAAGATTTTG
GAAACAAAAAATGGATTTGTAAAAATTAAATCTGTTCTACATATTTCAAG
AATTAGGGCTGTTGTTTCTTGGCATTATATCAGATCATTGCCGTATCATT
ATATGATGTATAACTCTAAATTTATCATTTTATTCTATGGTAAGAGAAGG
GGTCACAAAGACTGGGGTATCGATACTTTTAAGAATAGCCCTGACTCCTA
TCAAATACTTTGACCTGTTTGGAAAAATTCTTATTGTTGAAACAAATTTT
TATTGCAGGTCTTAGTCCCGACATCGCTCAACGGCAGCACGATGTCAAAG
AAGATAAGCTTCAAAATCTCCTTCAGGCTAAACACTTCGTTAAATTTGGG
GCATCAGTTTATGTCAAAGAGATCGTGACAAAACTCAAAAGCAGGGAGGA
TTTTAAACAGTGCGATGCTTTTGCAGCACGGAATATCCTCATGATATTCA
CTTGTTTTGTCAATGGGCTCAGGTAAAATATTTGTTAGATATATCATTCT
TTCAACTAAAATCATGCATCGGTCAAACTAAACTTTTTTTCGAAGAATAA
TGTATTTTAAGAACTTTTTCGGGAAAGAGCGAGAAAAGGTAAAATTTATA
GCCGAAAGTCAAAAATGGGCTAGCAACTTGGCTTTTGTTCAATCAAAAAA
TGAAAGCAATGATTGATGCAATCAAATAGAGCTTGAAATTCTTTTTACAA
TATATTGCACCAAGTCTCCTACTCAAACTTACAAAACGTCACAGTTATTT
TTAGAAACAAACCCTGTCACAATGAAGCTAGTTATCAATAAACTCTGTTA
TTTTTACATTCTGTTTTGTTCTTATATTTTAATCAATAGAACTTCAAATT
TAATGAACATGAGCATCCAGGATTTCGAAAAAGCCGAGTTCGACAAAGAA
TTCCATGCATTTGTCTTGAATAATCGTTTATATAAAACAAGTCTTCTATA
CGGCGCAAAAATCATTGTGCTCTCTAAAATACTCCATCGAATGTACAAAA
CTTATTTCAAGAATTGTCGCCCTTTATTGTCAAAAGATGAAGGTTTCAGT
GATGCAAACAGGTATATTACTACTTTCATTGTGCCTTAAAGTTAAGACAT
CGAAATTAGTAAAAAAACATCTGATATTCGTTTGCCCTAGCCTGGTGAAT
TTACTTAATAGCAACAGAAAAAGACACCTCAATCGGATGAGCGTACTGTT
TTGGTGCAAGAAGTGATTGGTATCTCATGTGTTTTTACAGGCCAATCTTT
CCGTCGAGCAAAAGTGGGGAGGCTTTGAATCAAAATGGTATCTCAAAAGC
ATTTCAAACCACTTTTGAAAGATCCAAGATTCTGGAAGGCACCTCTCGAT
GAACTTGAGTCCAACACGAATCCGAATCGCAATAGCCACCGAATTCGCTC
ATCACAAGGGTAACATACTATTCCTTTTTTTTTAGAAATAAAAAAAACTG
TGCGAGCTGAAACAGATTCAAAGCAACCCAAGGCACCAATACAAAAAAAA
ATCAATAACGTTCAATAAATAAATTAAAATTAAAATAATAATGTTCAAAA
TTTTACTGTATCATCAGGTGAAGATTACAATCGCTTTGCGGAGGTGTTTT
TAAAACACCGCCCATCAACTAGCAAGAAATTCTATGTACAACGCTTCATG
CACCGTGATGCCATCATGATGAGCATGAAGTGTTACGATGTAAGGTCAAT
TTATTTTAATTTTCAGATATGTGAATGCTTCTATATTCATGACGTAAAAT
ACTTCTTTTGTGGTCTCTATAAAAAAGATGTTGTAAAAATCCTAGAAATC
TCATTAGATAATACACGATTAAGAGATTTATTTCTGAATGTCAACTTTTG
GTTTGTTTCAGGTCTTTGAGATTGATAAATCATTGCGTGATGCTGCCACT
TCTTTTACGAAGAGTGTCTGCAGGATCAAACCAAAGTCAAAGAAATTATT
TGAATGGTTGAAACAGAACAAAGCCATCATCAAAGAAGAGATAGGCGAAA
CATTCACGGACGAAGAAAATGGATCAGGAGCTAGGAAAATTATTATGTAA
GTAAATATTTGATCTGAATTTCTTTTGAAGCGTTGTTTGAACATTGAATT
GAATAGTTTAACTAATTGCAGTGTAAATTCCATGTTAAAGTTTTGCAAAG
AAGGGTTATTTTATATCCTAGAATTATTCTTNTAAATTCCATGTTAAAGT
TTTGCAAAGAAGGGTTATTTTATATCCTAGAATTATTCTTCTATTGCGAT
TAGTTTTGAATTATATATATTTTTATTTTTATTTTTGTAATTGTGGGATT
GTGTATTTGTTGTTTTTGTTTTTTTCGCTGTGTTAATTGGTTGGTTTACC
ATTTTTGTCCTTGTTGCGTTGAGTTGGTGAAATAATTTCTTCATTTTTTG
ATTTGACTGTTTTGGCATATAACTTGAAATGCGTTGTTTCTGAGTTTTAA
TTAGCTTTTTCAGATACAGTATAATATCGCTCCCTTTCATCTATTTACCT
GAGTCGAATAGTTTATAGTGGCCAATCACAGCTCCAATTCCCTTTTTTTA
TTTTTTGACGATGCAAAAATTAGTTGTTTTTCTCTTTGCAAGTTTTTTAT
CCATGGAATCACTTGAACTTGCTTGGCTGCTTAAATGAATCCCTGATTCA
TTTTCAAATAAACTGCTTAATTTCTACAGCAATCTGTTGGTAAGCGTGTT
GAATTTATTTTACTCTTTTTGTACATTTCAGCATCAACCAATGAAGACAA
AGAAACAGAAAAATCAGTGAACAAAATTCTGAATGAAGACATAGAACTTC
CTTCTAAAAAGGCAAAAGTTGATGGTAAGCAATATCTTTTGAAAATTTTT
TCTGATGATAGAAATCTCTAACGAAAAACAATATCTAAGTTGATAGTTGA
TATTGCTAAACTACTTCAAAAATTTTAGCTGCAACCACTAAAGATCGAAA
AAGCGAAAGAGTGGCGGAAGAAGATGAAGAAAGAGATGAAGTTCCTTTAA
ACAAAACCAAAGTTGGTAAGCAATGTCTTTTGAAATTATCACCTGATGAT
ATATATATCTAACAAACAATATCTAATTTGATAGTAGATATTATGAAACT
CTTTCATGAATTTTAGCTGCAACCACTAAAGATCGAAAAAGCGAAAGAGT
GGCGGAAGAAGATGAAGAAAGAGATAAAGTTCCTTTAAACAAAACCAAAG
TTGGTAAGCAATGTCTTTTGAAATTATCCCCTGATGATACATATATTTAA
CAAACAATATCTAATTTGATAGTAGATATTATTAAATTATTTTATAAATT
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036582XLOC_036582Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058057-exon-scaffold_304-1575043694:272077..272163TCONS_00058057-exon-scaffold_304-1575043694:272077..272163Clytia hemisphaericaexon
TCONS_00058057-exon-scaffold_304-1575043694:271542..271755TCONS_00058057-exon-scaffold_304-1575043694:271542..271755Clytia hemisphaericaexon
TCONS_00058057-exon-scaffold_304-1575043694:270953..271174TCONS_00058057-exon-scaffold_304-1575043694:270953..271174Clytia hemisphaericaexon
TCONS_00058057-exon-scaffold_304-1575043694:270605..270773TCONS_00058057-exon-scaffold_304-1575043694:270605..270773Clytia hemisphaericaexon
TCONS_00058057-exon-scaffold_304-1575043694:270325..270446TCONS_00058057-exon-scaffold_304-1575043694:270325..270446Clytia hemisphaericaexon
TCONS_00058057-exon-scaffold_304-1575043694:269968..270152TCONS_00058057-exon-scaffold_304-1575043694:269968..270152Clytia hemisphaericaexon
TCONS_00058057-exon-scaffold_304-1575043694:269190..269282TCONS_00058057-exon-scaffold_304-1575043694:269190..269282Clytia hemisphaericaexon
TCONS_00058057-exon-scaffold_304-1575043694:268811..268897TCONS_00058057-exon-scaffold_304-1575043694:268811..268897Clytia hemisphaericaexon
TCONS_00058057-exon-scaffold_304-1575043694:268713..268738TCONS_00058057-exon-scaffold_304-1575043694:268713..268738Clytia hemisphaericaexon
TCONS_00058057-exon-scaffold_304-1510915933:272077..272163TCONS_00058057-exon-scaffold_304-1510915933:272077..272163Clytia hemisphaericaexon
TCONS_00058057-exon-scaffold_304-1510915933:271542..271755TCONS_00058057-exon-scaffold_304-1510915933:271542..271755Clytia hemisphaericaexon
TCONS_00058057-exon-scaffold_304-1510915933:270953..271174TCONS_00058057-exon-scaffold_304-1510915933:270953..271174Clytia hemisphaericaexon
TCONS_00058057-exon-scaffold_304-1510915933:270605..270773TCONS_00058057-exon-scaffold_304-1510915933:270605..270773Clytia hemisphaericaexon
TCONS_00058057-exon-scaffold_304-1510915933:270325..270446TCONS_00058057-exon-scaffold_304-1510915933:270325..270446Clytia hemisphaericaexon
TCONS_00058057-exon-scaffold_304-1510915933:269968..270152TCONS_00058057-exon-scaffold_304-1510915933:269968..270152Clytia hemisphaericaexon
TCONS_00058057-exon-scaffold_304-1510915933:269190..269282TCONS_00058057-exon-scaffold_304-1510915933:269190..269282Clytia hemisphaericaexon
TCONS_00058057-exon-scaffold_304-1510915933:268811..268897TCONS_00058057-exon-scaffold_304-1510915933:268811..268897Clytia hemisphaericaexon
TCONS_00058057-exon-scaffold_304-1510915933:268713..268738TCONS_00058057-exon-scaffold_304-1510915933:268713..268738Clytia hemisphaericaexon
TCONS_00058057-exon-scaffold_304-1491911889:272077..272163TCONS_00058057-exon-scaffold_304-1491911889:272077..272163Clytia hemisphaericaexon
TCONS_00058057-exon-scaffold_304-1491911889:271542..271755TCONS_00058057-exon-scaffold_304-1491911889:271542..271755Clytia hemisphaericaexon
TCONS_00058057-exon-scaffold_304-1491911889:270953..271174TCONS_00058057-exon-scaffold_304-1491911889:270953..271174Clytia hemisphaericaexon
TCONS_00058057-exon-scaffold_304-1491911889:270605..270773TCONS_00058057-exon-scaffold_304-1491911889:270605..270773Clytia hemisphaericaexon
TCONS_00058057-exon-scaffold_304-1491911889:270325..270446TCONS_00058057-exon-scaffold_304-1491911889:270325..270446Clytia hemisphaericaexon
TCONS_00058057-exon-scaffold_304-1491911889:269968..270152TCONS_00058057-exon-scaffold_304-1491911889:269968..270152Clytia hemisphaericaexon
TCONS_00058057-exon-scaffold_304-1491911889:269190..269282TCONS_00058057-exon-scaffold_304-1491911889:269190..269282Clytia hemisphaericaexon
TCONS_00058057-exon-scaffold_304-1491911889:268811..268897TCONS_00058057-exon-scaffold_304-1491911889:268811..268897Clytia hemisphaericaexon
TCONS_00058057-exon-scaffold_304-1491911889:268713..268738TCONS_00058057-exon-scaffold_304-1491911889:268713..268738Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_304supercontigscaffold_304:268713..272163 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0192967	0.200102	0	0	0.253126	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058057 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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