Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057577 ID=TCONS_00057577|Name=TCONS_00057577|organism=Clytia hemisphaerica|type=transcript|length=1152bpRun BLAST on NCBI protein sequence of TCONS_00057577-protein >TCONS_00057577-protein ID=TCONS_00057577-protein|Name=TCONS_00057577-protein|organism=Clytia hemisphaerica|type=polypeptide|length=316bp MSFFGFGQSAEISIELSDSDKRKQVELKNEDDRREKHFLFYDGETVAGTVRun BLAST on NCBI transcript from alignment at scaffold_293:187201..201371- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057577 ID=TCONS_00057577|Name=TCONS_00057577|organism=Clytia hemisphaerica|type=transcript|length=14171bp|location=Sequence derived from alignment at scaffold_293:187201..201371- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_293:187201..201371- >TCONS_00057577 ID=TCONS_00057577|Name=TCONS_00057577|organism=Clytia hemisphaerica|type=CDS|length=9510bp|location=Sequence derived from alignment at scaffold_293:187201..201371- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00057577 vs. Swiss-Prot (Human)
Match: VP26B (Vacuolar protein sorting-associated protein 26B OS=Homo sapiens GN=VPS26B PE=1 SV=2) HSP 1 Score: 486.493 bits (1251), Expect = 1.668e-171 Identity = 226/296 (76.35%), Postives = 267/296 (90.20%), Query Frame = 3 Query: 84 GQSAEISIELSDSDKRKQVELKNEDDRREKHFLFYDGETVAGTVNIKLKNPGKKLEHYGIKVEFIGQIELFYDRGNHHEFTSLVKELVKPGEMTTNGSYKFEFVNVEKPYESYTGKDVRLRYFLRVTIVRRLSDITKEVDIAVHTLSSYPEMNNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIRHMELAIIKRETAGTGPNSSPDNETIAKYEIMDGAPVRGESIPIRLFLSGYELTPTMRDINKKFSVRYFLNLVLVDEEERRYFKQQEITLWRKGDIPKRT 971 GQS E+ I L+D++ RK+ E K ED ++EK+FLFYDGETV+G V++ LKNP K+LEH GIK+EFIGQIEL+YDRGNHHEF SLVK+L +PGE+T + ++ FEF +VEKPYESYTG++V+LRYFLR TI RRL+D+ KE+DI VHTLS+YPE+N+SIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKI+HME+ IIKRET GTGPN +N+TIAKYEIMDGAPVRGESIPIRLFL+GYELTPTMRDINKKFSVRY+LNLVL+DEEERRYFKQQE+ LWRKGDI +++ Sbjct: 7 GQSVEVEILLNDAESRKRAEHKTEDGKKEKYFLFYDGETVSGKVSLALKNPNKRLEHQGIKIEFIGQIELYYDRGNHHEFVSLVKDLARPGEITQSQAFDFEFTHVEKPYESYTGQNVKLRYFLRATISRRLNDVVKEMDIVVHTLSTYPELNSSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMEIDIIKRETTGTGPNVYHENDTIAKYEIMDGAPVRGESIPIRLFLAGYELTPTMRDINKKFSVRYYLNLVLIDEEERRYFKQQEVVLWRKGDIVRKS 302 The following BLAST results are available for this feature:
BLAST of TCONS_00057577 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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