TCONS_00056519 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056519
Unique NameTCONS_00056519
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1587

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056519 ID=TCONS_00056519|Name=TCONS_00056519|organism=Clytia hemisphaerica|type=transcript|length=1587bp
GTCTGGATGTTGAGTCAGCACTTTGAGCAGTTATGACATGACTATAACCG
TGTTTGTTCTGTAATTCTGCCTACTTCATAACCAAATATTATTCCAACAA
TACACGGTCACATCCATAAAAAGTATGATGTAAAGTTTAGTATGGCAAAG
ACTTCATCACGTCCTAACAGTACTTATGATGACGGTGAAGTTATTGGATT
GCCAGTGAAGTTTGGCAGCGGTAGATGGAAAAATACTAAACAAGTGTCAG
GAACAAGATTCAAAATATGTTTATGTGGAAAAAGCAAAGTTGGAAAGACA
TCAATCTTTATGAGACTTCAGGGATTGGATTTTGCAGAAGATGATCCAAA
CTGTcccatttcaaattttgaattcaaagatGAGAATGATAGTACAGTAG
AGTATTCTATATCAGATCCGGAATCTATAGACATAGACTCGCTGACATTT
GGGGACCATTACCGAAATGCACACTGTGTTGTATTAATATATGATGTCAC
TGACTTTAGTTCTTTGGATTATTTGAGCTATGAAAtagagaaaattgaaa
aaaataactataCTCCATATGCTAAATATGTTTTATTGCGAAATAAAATT
GAtaagaaatcatcaaaacatattCCTTTAGCtaagcaaaaagaattttt
tgcaaACAGTAAATTGCGCTTAAAGATTGATCATGTAGTTGAAACCTCTG
CAAAAACAAATGAAGGCATATTAGAATTCTTCAAAGAAGAACTGCCAGAA
TTACTAGTACTCCCgtcatcagaaagcaaagttaaGGCCTTTGATCGCCT
TGTTAGTGATTCCCAACAAGGGCTAGATGCAACTGACTCTTCCCCTGGTG
gcagaaaaaagaagaagaagaaaaggatcaaTTGTGCAACATCATAAGAA
TTTCATAAAGATTTACTTCAGAAAAAGCTTCCAGAATTTTGTTTACAGAA
GCAGGGTTTTGCTTTGTGTTTTGCATGGATGGCAAATGACAAGGTAAACT
CTGGGAGAGTTAAAGAATAATGCAGTAGTATTTTTagtttgttttatatt
tttgctttttgaaagcACAGGATAATAAGTTATGTTTTAACTCTTTAATA
TTATTAGCTCTATAAGACAGGCTATTTGATGAGAGCACTCTACAAAATGA
AAGTGTCTGTTACTTATTGGTATTGAATTTTATTGACTTTCCATAGCTTG
TGAATGTGATGACTCAGTTAAAATTTTAGTTATAATATCCTTTTAAGAGT
TATCTATCTTTATTATTTATGAAATTCACATacagtatttttgtttattt
ataatCATTTATATTACGTGTCATGCAGTGCTCTACCTTATTTTTAACAG
AACAGTAATCTCTTGAGAGgaattgataaaaataaaaattttcactttgt
ttTAGTCAATCTTTGATTTACTTAATTAGTTATACATCATTTGATGATGA
TTTTGTGTTATTGCGTTCTAGTTGCCGCTCTGAAATTAGGAAATTTATAa
tcatatttttatttgattttcttaattaaactttagttttaaaaaagaac
ttttgtattttgaagCTATATTTTACTTGAAATAGTT
Run BLAST on NCBI

protein sequence of TCONS_00056519-protein

>TCONS_00056519-protein ID=TCONS_00056519-protein|Name=TCONS_00056519-protein|organism=Clytia hemisphaerica|type=polypeptide|length=251bp
MAKTSSRPNSTYDDGEVIGLPVKFGSGRWKNTKQVSGTRFKICLCGKSKV
GKTSIFMRLQGLDFAEDDPNCPISNFEFKDENDSTVEYSISDPESIDIDS
LTFGDHYRNAHCVVLIYDVTDFSSLDYLSYEIEKIEKNNYTPYAKYVLLR
NKIDKKSSKHIPLAKQKEFFANSKLRLKIDHVVETSAKTNEGILEFFKEE
LPELLVLPSSESKVKAFDRLVSDSQQGLDATDSSPGGRKKKKKKRINCAT
S
Run BLAST on NCBI

transcript from alignment at scaffold_276:709556..714421-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056519 ID=TCONS_00056519|Name=TCONS_00056519|organism=Clytia hemisphaerica|type=transcript|length=4866bp|location=Sequence derived from alignment at scaffold_276:709556..714421- (Clytia hemisphaerica)
GTCTGGATGTTGAGTCAGCACTTTGAGCAGTTATGACATGACTATAACCG TGTTTGTTCTGTAATTCTGCCTACTTCATAACCAAATATTATTCCAACAA TACACGGTCACATCCATAAAAAGTATGATGTAAAGGTATAAACACATTTC TTGTTTCTTGCATTTTGATTTTAGTATAGTAAGATAGTCTATCGGTGTTG TCAACAGTCTGTCCCTGTGACAAGGTACCCTGTGACAAACAAAAACAAGA ACCTGACACCTGAAATAGCTAAATACAACCTGATGGTTTGGGGGAGAATG ATGGTCATGGAGAAGGGTTTGATTGTAGACTTCTCCTTACCTCTCCTTCT CCTAGCTTTTGATGTGGTGATAAACAGGGTTTTGAAGATTTCTGATTATA ATTTTCCATAGAGGGGCTTTTTCATACATTTTTCTAGAATTACACAATCA TTGAAGGATTCAGGGGTCATGTCATTATCTGAAATCCAGGAGACAGTCTT TTCGAAGAACGCCACGCTCTTTTGAATAACTGACAATTCCAGCATACATT TTTATAGTATGATAATGTCATATAATAATTGATTTGTCTTTTACAACACA GCTGTTACCAGTTACCGTCAACTGCTCTAACTTGGGACTATCTGACAAAC AGCAATTCAGCCACCATTTCACCAAACCTCCAAAGTCAGAAAGTCCTTTG ATTTGAGTTAATGAAGGACGTATTAAAAAATACACGATTTCTCTTTCGCA CCGAGTAGGCTTTAAATCGAAATATGAAAAAAATCTCATAGTGGAACACA TGCAAATGTCTGGAAAAAAGAAGACCAAGTTAGTGGCAAAACAATCAGTC AGGCACATCCTGGCAAATGAACGGGGTGAGCATTTGCATGGGGTATTCGT CACCCAGTGTAAATGAGATAGGACGTCTCAGGCTAAAAGCNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNATCTATGCAATTCTTTGAAATGAAGCAAAATATTTCCAACCCGGTTC AATTAAACTGGGTATTCGGCGCTATTACGTCACTTTCGTTTTCGACCCCG TTCATTTTGCCAATGGTCGCAAGTGAAAAATACCCCGTTCATTTGCCAGG ATGTGCCTGACTGACAATGGAGCGTTTGACGTCACTCGCGTGGCAAGTTA AACACTGATATTTGTTAATCCCATCAGGCGATAGGCGGTTAGGCAGTGGG CATTCTCTTATTCTCTTATCAGCGTCTGGTCATTTTGAATAAAAAAAAAA AGTTAAAAAGGGCGCGCTATCCATCAGTGAAAGTTATCGTGACATGTTAT GACAGAAAGTATGATTGATTAACTTGGTGGAGGTAGCAAAACAAACTTGT TGTCAAAGAGATTTAACAGTAAGTGAAAATACAGACCAGAATATCAACAG TCCCTTGTTTTGACCAATCGCCCCAAGTTAGAGCAGTTGACGGTACCTAG AGACAAGATGATTTAGAGTAATTTGTTATTCAGACTATCGCGTTCTCCTA AACAACTATTGCATTCATCAGAGGGACAAAAAGATTATAATAGTTGCTTG GGAGACCACAACGGTCTATTGCATAACTTATTACTCCACACTTCAGTGGA TACAATGGGATAAGTAAAGGAAGCGAGAAATTAGATATGACCTATGAATA AGTTTTGTTCAAATTGGCATGTTAACATTCTCCCGAATTTGCATGCGATA TCACTGCGAATCTTCTCGTGCTGCGTCCTATAAAGTATTAGCTGAGGTAG TAGGGTTATATTTCCATAAATTGGAGCAGATAATTTCCGGTCCAAAGTGT TTGAGTAATTAATATGGGGAACTGAGTCAATAGGTCGTTGCGTTCTCCTA AACGACTATAAAAAGAATAGCAGATTTGACCATTATTTTATTGCCTTTTC GTGATTTATGCAATAGACCTTTCCTGTAATTCCTTAAAAACAAGTACTAT ATTTCTTTCCTTGAGTTATCATGATTTGAAACCATTTGAAAAATACCTCT CTAGTTTAGTATGGCAAAGACTTCATCACGTCCTAACAGTACTTATGATG ACGGTGAAGTTATTGGATTGCCAGTGAAGTTTGGCAGCGGTAGATGGAAA AATACTAAACAAGTGTCAGGAACAAGATTCAAAATATGTTTATGTGGAAA AAGCAAAGTTGGAAAGACATCAATCTTTATGAGACTTCAGGGATTGGATT TTGCAGAAGATGATCCAAACTGTCCCATTTCAAATTTTGAATTCAAAGAT GAGAATGATAGTACAGTAGAGGTAAGATTTTGGAAATGACCAGAGAAAAA GTATATAACATTGAACCCAGTAGACTTGAACTACAAAGCGCTTATTTCTT TTTTAATTGTTGGGAAAATATTCTTATTAGAACATAATCTCGTATCTTAT GTCAATATTTCTTGTAGCCTCTTATTCACAAATCAAGCTTTTTCATTATT GTATCTTTCCATTTCAGTATTCTATATCAGATCCGGAATCTATAGACATA GACTCGCTGACATTTGGGGACCATTACCGAAATGCACACTGTGTTGTATT AATATATGATGTCACTGACTTTAGTTCTTTGGATTATTTGAGCTATGAAA TAGAGAAAATTGAAAAAAATAACTATACTCCATATGCTAAATATGTTTTA TTGCGAAATAAAATTGATAAGAAATCATCAAAACATATTCCTTTAGCTAA GCAAAAAGAATTTTTTGCAAACAGTAAATTGCGCTTAAAGATTGATCATG TAGTTGAAACCTCTGCAAAAACAAATGAAGGCATATTAGAATTCTTCAAA GAAGAACTGCCAGAATTACTAGTACTCCCGTCATCAGAAAGCAAAGTTAA GGCCTTTGATCGCCTTGTTAGTGATTCCCAACAAGGGCTAGATGCAACTG ACTCTTCCCCTGGTGGCAGAAAAAAGAAGAAGAAGAAAAGGATCAATTGT GCAACATCATAAGAATTTCATAAAGATTTACTTCAGAAAAAGCTTCCAGA ATTTTGTTTACAGAAGCAGGCGTTTTGCTTTGTGTTTTGCATGGATGGCA AATGACAAGGTAAACTCTGGGAGATTTAAAGAATAATGCAGTAGTATTTT TAGTTTGTTTTATATTTTTGCTTTTTGAAAGCACAGGATAATAAGTTATG TTTTAACTCTTTAATATTATTAGCTCTATAAGACAGGCTATTTGATGAGA GCACTCTACAAAATGACTTTATTGACTTTCCATAGCTTGTGAATGTGATG ACNCCAGAGAAAAAGTATATAACATTGAACCCAGTAGACTTGAACTACAA AGCGCTTATTTCTTTTTTAATTGTTGGGAAAATATTCTTATTAGAACATA ATCTCGTATCTTATGTCAATATTTCTTGTAGCCTCTTATTCACAAATCAA GCTTTTTCATTATTGTATCTTTCCATTTCAGTATTCTATATCAGATCCGG AATCTATAGACATAGACTCGCTGACATTTGGGGACCATTACCGAAATGCA CACTGTGTTGTATTAATATATGATGTCACTGACTTTAGTTCTTTGGATTA TTTGAGCTATGAAATAGAGAAAATTGAAAAAAATAACTATACTCCATATG CTAAATATGTTTTATTGCGAAATAAAATTGATAAGAAATCATCAAAACAT ATTCCTTTAGCTAAGCAAAAAGAATTTTTTGCAAACAGTAAATTGCGCTT AAAGATTGATCATGTAGTTGAAACCTCTGCAAAAACAAATGAAGGCATAT TAGAATTCTTCAAAGAAGAACTGCCAGAATTACTAGTACTCCCGTCATCA GAAAGCAAAGTTAAGGCCTTTGATCGCCTTGTTAGTGATTCCCAACAAGG GCTAGATGCAACTGACTCTTCCCCTGGTGGCAGAAAAAAGAAGAAGAAGA AAAGGATCAATTGTGCAACATCATAAGAATTTCATAAAGATTTACTTCAG AAAAAGCTTCCAGAATTTTGTTTACAGAAGCAGGGTTTTGCTTTGTGTTT TGCATGGATGGCAAATGACAAGGTAAACTCTGGGAGAGTTAAAGAATAAT GCAGTAGTATTTTTAGTTTGTTTTATATTTTTGCTTTTTGAAAGCACAGG ATAATAAGTTATGTTTTAACTCTTTAATATTATTAGCTCTATAAGACAGG CTATTTGATGAGAGCACTCTACAAAATGAAAGTGTCTGTTACTTATTGGT ATTGAATTTTATTGACTTTCCATAGCTTGTGAATGTGATGACTCAGTTAA AATTTTAGTTATAATATCCTTTTAAGAGTTATCTATCTTTATTATTTATG AAATTCACATACAGTATTTTTGTTTATTTATAATCATTTATATTACGTGT CATGCAGTGCTCTACCTTATTTTTAACAGAACAGTAATCTCTTGAGAGGA ATTGATAAAAATAAAAATTTTCACTTTGTTTTAGTCAATCTTTGATTTAC TTAATTAGTTATACATCATTTGATGATGATTTTGTGTTATTGCGTTCTAG TTGCCGCTCTGAAATTAGGAAATTTATAATCATATTTTTATTTGATTTTC TTAATTAAACTTTAGTTTTAAAAAAGAACTTTTGTATTTTGAAGCTATAT TTTACTTGAAATAGTT

Coding sequence (CDS) from alignment at scaffold_276:709556..714421-

>TCONS_00056519 ID=TCONS_00056519|Name=TCONS_00056519|organism=Clytia hemisphaerica|type=CDS|length=2268bp|location=Sequence derived from alignment at scaffold_276:709556..714421- (Clytia hemisphaerica)
ATTTGGGGACCATTACCGAAATGCACACTGTGTTGTATTAATATATGATG
TCACTGACTTTAGTTCTTTGGATTATTTGAGCTATGAAATAGAGAAAATT
GAAAAAAATAACTATACTCCATATGCTAAATATGTTTTATTGCGAAATAA
AATTGATAAGAAATCATCAAAACATATTCCTTTAGCTAAGCAAAAAGAAT
TTTTTGCAAACAGTAAATTGCGCTTAAAGATTGATCATGTAGTTGAAACC
TCTGCAAAAACAAATGAAGGCATATTAGAATTCTTCAAAGAAGAACTGCC
AGAATTACTAGTACTCCCGTCATCAGAAAGCAAAGTTAAGGCCTTTGATC
GCCTTGTTAGTGATTCCCAACAAGGGCTAGATGCAACTGACTCTTCCCCT
GGTGGCAGAAAAAAGAAGAAGAAGAAAAGGATCAATTGTGCAACATCATA
ATATTCTATATCAGATCCGGAATCTATAGACATAGACTCGCTGACATGGC
AAAGACTTCATCACGTCCTAACAGTACTTATGATGACGGTGAAGTTATTG
GATTGCCAGTGAAGTTTGGCAGCGGTAGATGGAAAAATACTAAACAAGTG
TCAGGAACAAGATTCAAAATATGTTTATGTGGAAAAAGCAAAGTTGGAAA
GACATCAATCTTTATGAGACTTCAGGGATTGGATTTTGCAGAAGATGATC
CAAACTGTCCCATTTCAAATTTTGAATTCAAAGATGAGAATGATAGTACA
GTAGAGATTTGGGGACCATTACCGAAATGCACACTGTGTTGTATTAATAT
ATGATGTCACTGACTTTAGTTCTTTGGATTATTTGAGCTATGAAATAGAG
AAAATTGAAAAAAATAACTATACTCCATATGCTAAATATGTTTTATTGCG
AAATAAAATTGATAAGAAATCATCAAAACATATTCCTTTAGCTAAGCAAA
AAGAATTTTTTGCAAACAGTAAATTGCGCTTAAAGATTGATCATGTAGTT
GAAACCTCTGCAAAAACAAATGAAGGCATATTAGAATTCTTCAAAGAAGA
ACTGCCAGAATTACTAGTACTCCCGTCATCAGAAAGCAAAGTTAAGGCCT
TTGATCGCCTTGTTAGTGATTCCCAACAAGGGCTAGATGCAACTGACTCT
TCCCCTGGTGGCAGAAAAAAGAAGAAGAAGAAAAGGATCAATTGTGCAAC
ATCATAATATTCTATATCAGATCCGGAATCTATAGACATAGACTCGCTGA
CATGGCAAAGACTTCATCACGTCCTAACAGTACTTATGATGACGGTGAAG
TTATTGGATTGCCAGTGAAGTTTGGCAGCGGTAGATGGAAAAATACTAAA
CAAGTGTCAGGAACAAGATTCAAAATATGTTTATGTGGAAAAAGCAAAGT
TGGAAAGACATCAATCTTTATGAGACTTCAGGGATTGGATTTTGCAGAAG
ATGATCCAAACTGTCCCATTTCAAATTTTGAATTCAAAGATGAGAATGAT
AGTACAGTAGAGATTTGGGGACCATTACCGAAATGCACACTGTGTTGTAT
TAATATATGATGTCACTGACTTTAGTTCTTTGGATTATTTGAGCTATGAA
ATAGAGAAAATTGAAAAAAATAACTATACTCCATATGCTAAATATGTTTT
ATTGCGAAATAAAATTGATAAGAAATCATCAAAACATATTCCTTTAGCTA
AGCAAAAAGAATTTTTTGCAAACAGTAAATTGCGCTTAAAGATTGATCAT
GTAGTTGAAACCTCTGCAAAAACAAATGAAGGCATATTAGAATTCTTCAA
AGAAGAACTGCCAGAATTACTAGTACTCCCGTCATCAGAAAGCAAAGTTA
AGGCCTTTGATCGCCTTGTTAGTGATTCCCAACAAGGGCTAGATGCAACT
GACTCTTCCCCTGGTGGCAGAAAAAAGAAGAAGAAGAAAAGGATCAATTG
TGCAACATCATAATATTCTATATCAGATCCGGAATCTATAGACATAGACT
CGCTGACATGGCAAAGACTTCATCACGTCCTAACAGTACTTATGATGACG
GTGAAGTTATTGGATTGCCAGTGAAGTTTGGCAGCGGTAGATGGAAAAAT
ACTAAACAAGTGTCAGGAACAAGATTCAAAATATGTTTATGTGGAAAAAG
CAAAGTTGGAAAGACATCAATCTTTATGAGACTTCAGGGATTGGATTTTG
CAGAAGATGATCCAAACTGTCCCATTTCAAATTTTGAATTCAAAGATGAG
AATGATAGTACAGTAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035601XLOC_035601Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056519-proteinTCONS_00056519-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056519-exon-scaffold_276-1575043694:714287..714421TCONS_00056519-exon-scaffold_276-1575043694:714287..714421Clytia hemisphaericaexon
TCONS_00056519-exon-scaffold_276-1575043694:711901..712167TCONS_00056519-exon-scaffold_276-1575043694:711901..712167Clytia hemisphaericaexon
TCONS_00056519-exon-scaffold_276-1575043694:711661..711704TCONS_00056519-exon-scaffold_276-1575043694:711661..711704Clytia hemisphaericaexon
TCONS_00056519-exon-scaffold_276-1575043694:709556..710696TCONS_00056519-exon-scaffold_276-1575043694:709556..710696Clytia hemisphaericaexon
TCONS_00056519-exon-scaffold_276-1510915933:714287..714421TCONS_00056519-exon-scaffold_276-1510915933:714287..714421Clytia hemisphaericaexon
TCONS_00056519-exon-scaffold_276-1510915933:711901..712167TCONS_00056519-exon-scaffold_276-1510915933:711901..712167Clytia hemisphaericaexon
TCONS_00056519-exon-scaffold_276-1510915933:711661..711704TCONS_00056519-exon-scaffold_276-1510915933:711661..711704Clytia hemisphaericaexon
TCONS_00056519-exon-scaffold_276-1510915933:709556..710696TCONS_00056519-exon-scaffold_276-1510915933:709556..710696Clytia hemisphaericaexon
TCONS_00056519-exon-scaffold_276-1491911889:714287..714421TCONS_00056519-exon-scaffold_276-1491911889:714287..714421Clytia hemisphaericaexon
TCONS_00056519-exon-scaffold_276-1491911889:711901..712167TCONS_00056519-exon-scaffold_276-1491911889:711901..712167Clytia hemisphaericaexon
TCONS_00056519-exon-scaffold_276-1491911889:711661..711704TCONS_00056519-exon-scaffold_276-1491911889:711661..711704Clytia hemisphaericaexon
TCONS_00056519-exon-scaffold_276-1491911889:709556..710696TCONS_00056519-exon-scaffold_276-1491911889:709556..710696Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_276supercontigscaffold_276:709556..714421 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.646903 0 0.27104 0.17476 0.000251301 2.16806 3.32182 1.6131 4.26167 5.46805 7.77216e-05 1.48994 2.56721 2.66834 1.33817 0 1.90827 1.74814 1.27397 2.4029 1.9819 0.288325 4.49945e-07 2.0521 4.62294 0.343719 4.85398 4.03283 0.780395 0.739938
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056519 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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